>input_sequence_85961
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--------------------------------------------ATGGGAGGGAAGTCACCCTTCTCCTTCTTCTGCCCG
ATGTTCAGCTTCCTGTCGAGGTCGAGTTCGAGCTCGAGGTACGACGACGGCTACATGAGCGACTGGGAGACCGAGACCCG
GCGGAGGTGCGGGAGCAAGGTGCGGTCCAGCGACGAGGACTCCGGCTGGTGGGTCGGTGAGCGCGACGTCGACCGCAAGG
CCGCCAACTACATCAACGACTTCCACCAGAAAAAGGCACCACCAACACCTAGCTA------G------------------
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>chr7D_1_TraesCS7D01G506600
GTTGAATTTGCTTCCAGAACCATGGTCTCTCCGACATAGCACCTCACCACTGATTTCTCACTCTAAGCCATGACCATTTG
ATGACCCTCCCCTCGATCAAAACAACGCCACTGTCGTGCTCGACTAG-----------------CAATTTTCCATATATG
TGGAAATTCAATTTGTTATAAAAAA--CACTTCAAATCTTATTGGTGGTAATCATGTATCCGACTCCGCAACAACCACTA
TATCAGACGGATATCCTGATGTT---------------------------------------------------------
---------------------------------------------------------------------------CCTTT
TCCCTTTTCCTATAGATTATCAGGGTTTTAGATCTGT------TTCTTCTTCTTCCCCACATCCATATGATTCTGTTTTA
CTTTTCTCGGTTATCAAGGTTTCTTGTTCTTCTC---CTTCTTCTTTACCCTAAAAAAATGGAGATACATACGTGTACGC
ATTCCATGAACCAACAAACCCTACAAGAAGAAGAACCATAAGATATCTTCTGTTAGATACGTTCGTCTACCTTTTGGCAT
AGTGCTCTAGAAAGCTCTGGTGAGAGACCGCGATACACGAGCAATGAACACGAAGCTTCATCAGCTGTTCAGCACAAGAA
GGGAAAGACATAGAATAAAGAGAGACAATTGTAAGGTAAATGCATACGTTCCTTCTTCCTCTAGGGGTGCTGGTGCCACA
GTAAAGCAGAGGCCTAGAAGCCACGCTTGCTTTCCGCTAGGGGCACCTAAATAATTAGCTAGCGCTCTCCTCATCTCATC
ATCAACCCCATCTTGCGCCGGTGATGCGAATACTATGGAGGCACGATCTCGGCCGTCCAAACACCGTCAGACATGTTTAT
CCCACGGTGCGATCGATCCTCCTCCTCCTATAAA-TTGAGGAGGTGCGCTGGCCTCTCATTCTCCTTAAGCATAAGACAG
CAACAAGCGACAGAGCCCCTTAGCGGCCACCAATAATCACTTTCTCTATGCTTTTCTAGTTTCTA---GCCAGCAAGTTT
CTCTCACTACGCAGCAAGCTAAACTTGGTGTAGAGCTAGGTAAGATGGGAGGGAAGTCACCCTTCTCCTTCTTCTGCCCG
ATGTTCAGCTTCCTGTCGAGGTCGAGTTCGAGCTCGAGGTACGACGACGGCTACATGAGCGACTGGGAGACCGAGACCCG
GCGGAGGTGCGGGAGCAAGGTGCGGTCCAGCGACGAGGACTCCGGCTGGTGGGTCGGTGAGCGCGACGTCGACCGCAAGG
CCGCCAACTACATCAACGACTTCCACCAGAAAAAGGCACCACCAACACCTAGCTA------GGTAGCATGCAACACTCGA
TCGCCATGCATGCAACCGTGTACCAGGAGACCAGGGCATGAAGGTTCTTGAATGGTTCCTCTTGTTATCATGCATGTTCA
GTTGTGTGGATTTAGAGGAGGTACGAATAATTTTTGCTTGGCAGATGTAGATCTCTGTGTTCGTGAGTGT----------
GCGTGTGGGGTGGGGGGATGACAGGGATGCGTCACAGACGTATTTGTTGTTTGCTGCCAAATTAAGCGATGATCATGAAT
G----TATAGTGTGTTTCCATGCATATGTGTTCTGTTTGATCAGTACTGCAGCGGATGTGCTAGA---------------
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-----------------------TCACAGGCAACTGATTATAGTTTTTGCAGCTCGATTTTGCGGCGCGGTGGATAGCAG
CGTCCGAAGCTGGCTGCGGCGTCCCCGCGAGGCCTAGCGAGGAGTGAGCTGGCGA-TACCCAGCTGGCCACAGCGTCGCA
GATGGAGGCGAGTCGGAGGTTTGACAGGTTCAGGTCGGAGGTCTTTTCATGCTAACTACATATCGGATTGGGCCGTGCCT
ATGCCGGAGACGCGAACTCCGAGGTGTGGGAAGTCAGGGCTCACATAGGATAATGCTTCTAAGGCGGCGACCGGAGGAAA
GGCAGGGGACAACTGAAGGAAGAGTGAATGGACCGGGAGAGAACATACAGTGGAGATAGAACGGTTGGAGGAGGAAGATT
ATCTACCCGTTTGTTTTGATCCAATGTGAGGGGGCATTCACTTCCAAATGAACAGAAACTGAAGAAGACGAAAAATAATC
CAAATGATAAGTATCACACATGTGACACGAAGCAACATAGTCTGAATGTCCTTATTACCATCCATTTTGCAACATCAAAC
AGAATTAAAAATAAAAAACCCAATTAAAAATATTTTTGGTTTTTTGGACTTAAAAATATTTTATCTCTTAAATAAAAAAC
CCAATT-AAAAATTTGTTTTCATCATTAAATCCGTCTCAAAGAGATCTGCAAAACTAGATCTCGTATTGATATGTT
>chr7A_1
GTTTAATTTGCTTCCAGAACCATGGTCTCTCCGACATAGCACCTCAGCACTGATTTCTCACTCTAAGCCATGAACATTTG
ATGACCCTCCCCTCAATCAAAACAATGCCACTATCGTGCTCGATCAGC-AAGTAGCTAACCCCACAATTTTTCATATATG
TGGAAATTTAATTTGTTATAAAAAA--CAATTCAAAACTTAATGA---TAATCATGTA----ACTATGGAACAACCACTA
TATCAAACGGGTATCCTGATGTTCCTTTATGATATTTTGAGAATGCTTGAGGATACTTTTGGACCTCTTTGATTTTTAAT
AAAATGGCTGTGTGCATCAACGTGATGCAGAGGCCGGGGGTTATGCCTCTTTTTCTAAAAAAAAATCCTGATGTTCCTTT
TCCCTTTTCCTATAGATTATCAGGTTTTTAGATCTATTTCTTCTTCTTCTTCTTCCCCACATCCATCTGATT----TTCA
CTTTTCTGAGTTATCAAGGTTTCTTGTTCTTCTC---CTTCC---TTACCCTAGAAAAATGGAGATACATACGTGTACAC
ATTCCGTGAACCAACAAACCCTACAAGAAGAAGAACCATAAGATATCTTCTGTTAGATACGTTCGTGTACCTTTTGGCAT
AGTGCTCTAGAAAGCTCTGGTGAGAGACCACGATACACGAGCAATGAAGATGAAGCTTCATCTGCTGTGCGGCATAACAA
GGGAAAG--ATAGAATAAAGAGAGGCAATTGTAAGGTAAATGCATGCGTTCCTTCTTCCTCTAGGGGTGCTGGTACGATA
GTAAAGCAGAGGCCTAGAAGCCACGCTTGCTTTCCGCTATGGGTACCTAAATAATTAGCTAGCGCTCTCCTCGTCTCATC
ATCAACCCCATCTTGCGCCGGCAATGCGAATACTATAGCGGCACGATCTCGGCCGTCCAAACATCGTCGAACATCTCGAT
CCAACGGTGCGATCGATCCTCCTTCTCCTATAAA-T-GAGGAGGTGCGCTGGCCTCTCATTCTCCTTAAGCATAAGACAG
CAAGAAGCGACAGAGCCCCTTAGCGGCCACCAATAATCACTCTCTCTATGCTTCTCTAGTTTCTA---GCCAGCAAGTTT
CTCTCACTAGGCAGCAAGCTAAACTTGGTGTAGAGCTAGGTAGGATGGGAGGGAAGTCGCCCTTCTCCTTCTTCTGCCCG
ATGTTCAGCTTCCTGTCGAGGTCGAGTTCGAGCTCAAGGTACGACGACGGCTACATGAGCGACTGGGAGGG------CCG
GCCGAGGTGCGGGAGCAAGGTGCGGTCCAGCGACGAGGACTCCGGCTGGTGGGTCGGCGAGCGCGACGTCGACCGCAAGG
CCGCCAACTACATCAACGAGTTCCACCAGAAAAAGGCACCACCAACACCTAGCTA------GGTAGCATGCAACACTCT-
---CCATGCATGCAACCGTGTATCAGGAGTCCAGGACACGAAGGTTCTTGAATGGTTCCTCTT-TTATCATGCAT-----
GTTGTGTTGATTTAGAGGAGGACGAATAATTTTTTGCTTGGCAGATGTAGATCTATGTGCTCGTGTGTGCTCGTGTGTGC
GCGTGTGGTGTGCGGGGATGGCAGGGATGCGTCACAGATGTATTTGTTGTTTGCTGCCATATTAAGCGATGATGATGAAT
GTATATATAGTGTGTTTCCGTGCATATGTGTTCTGTTTGATCAGTACTTCAGCGGATTTGCTAAA---------------
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-----------------------TCACAGGCAACTGATTATAGTTTTTGCGGCTCGATTTCGCGGCGCGGTGGATAGCAG
-GTCCGAAGCTGGCTGCGGTGTCCCCGTGAGACCTAGCAAGGAGTGAGCTGG------CCCAGCTGGCCACGGCGTCGCA
GATGGAGGCGAGTCGGAGGTTTGACGGGTTCAGGTCGGAGGTCTTTTCATGCTAACTGCATGTCGGATTGGACCATGGCC
ATGCCGGAGATGCGAACTCCGAGGTGTGGGAAGTCAGGGCTCACATAGGTTAATGCTTCTAAGACGGCGACCGGAAGAAA
GGCAGGGGACAACTGAAGGAAGAGTGAATGGACCGGGAGAGAACATACAGTGGAGATAGAACGGTTGGAGGAGGAAGATT
ATCTACCCGTTTGTTTTGATTCAATGTGAGGGGGCATTCACTTCCAAATGAACAGAAACTGAAGAAGACGAAAAATAACC
CAAATGATAAGTATCACACATGTGACACAAAGCAACATAGTCTGAACACCCTTATTACCATCCATTTTGACACATCAAAC
AGATGATATCAGCGG-------------AATCTTTTTGGTTTTTTGGACTTAAAAATATTT-ATCTCTTAAATAAAAACC
CAATAAAAAAAATCTGTTTTCATCATTAAATCCGTCGCAAAGAGATCTGCAAAACTAGATCTCATATTGATAT---
>chr7B_6
-----ATTTGCTTCCAAATCCATGGTCTCCCCGACATAGCACCTCCCCACTGTTTTATCACTCTAGT-CATGATCATTTG
ATGACCCTCCCCTCGATCAAAACTATGCCACTGTCGTGCTCGACTAGCTAAGTAGCTAACACCGCAATGTCCC----ATG
TGGAAATTCAATTTGTTATAAAAAAAACACTTCAAAACCTA---GTGGTAATCATATATTCGACTCTGGAACAACCACTA
TATCAGCTGGGTATCCTGCTGTTT--------------------------------------------------------
-----------------------------------------------------------------------------TTT
TTCCTTGTCCCATAGATTATCAGGG---------------------------------------------TT----TTCA
CTTTTGTAGGTTATCAAGGTTTCTTATTCTTCTCCATCTTCC---TTGCCCTAAAAAAATGGAGATACATATGTGTACGC
ATTCCGTGAACGAACATACCCTACAA---GAAGAACCATAAGATACCTTTTGTTAGATACGTTCGTGTACCTTTTGGCAT
AGTGCTCTGGAAAGCTCTGGTGAGAGACCGCGATAAACGAGCAATGAAGATGAAGCTTCATCTACTGTGCAGCATAACAA
GGGAAAG--ATAGCATAAAGAGAAACAATTGTAAGGTAAATGCATGCGTTCCTTCCTCCTCTAGGGGTGCTGGTGCGAAG
GTAAAGCAGAGGCCTAGAAGCCACGCTTGCTTTCTGCCCTGCGCTCAT--ATAATTAGCTAGCGCTCCCCTCATCTCATC
ATCAACCCCATTATGCACCGGTGATGCGAATACTATAGCGGCATGATCATGGCCGTCCAAATATCGCCGGACATCTCGAT
CCAATGGTGTGATCGATCCTCTTCCTCCTATAAATT-GAGGAGGTGCGCTGGCCTCTCATTCTCCTTAAGCATAAGACAG
CAACAAGCGACAGAGCCCCTTAGCGGCCACCAATAATCACTTTCTCTATGCTTCTCTAGTCTCTACTAGCTAGCAAGTTC
CTCTTACTAGGCAGCAAGCTAAAGTTGGTGTGGAGGTAGCTAGGATGGGAGGGAAGTCGCCCTTCTCCTTCTTCTGCCCG
ATATTCAGCTTCCTGTCGAGGTCGAGTTCGAGCTCGAGGTACGACGACGGCTACATGAGCGATTGGGAGGG------CCG
GCCGAGGTGCGGGAGCAAGGTGCGGTCCAGCGACGAGGACTCCGGCTGGTGGGTCGGCGAGCGCGACGTCGACCGCAAGG
CCGCCGACTACATCAACGACTTCCACCAGAAAAAGGCACCACCAACACCTAGCTACTCCTAGGTAGCATGCAACACTCGA
T-------CATGCAACCGTGTACCAGGAGACCAGGGCATGAAGGTTCTTGAATGGTTCCTCTTGTTATCATGCATGTTCA
GTTGTGTGGATTTAGAGGAGGTACGAATAATTTTTGCTTGGCAGATGTAGATCTCTGTGTTCGTGTGTGT----------
GCGTGTGGGGTGGGGGGATCACAGGGATGCGTCACAGATGTATTTGTTGTTTGCTGCCAAATTAAGCGATGATCATGAAT
G----TATAGTGTGTTTCCATGCATACGTGTTATGTTTGATTAGTACTTCAGCGGATTTGCTAAGACTAGCCACAATGGG
GAGTAATTTAGACTAGTAATAACATGCATATGTTACTAGTGTATGTTACTATCTCTATAGTGGCAAGTAACATGTGTGTG
ATATCATACAACACTTCATTTATTAGGTTGTACACTCATCTTGTCTTGGTATGTGTGATGTTAAGTAACTAGCTATGTTA
ACACATGCCTCTCTTTCTTCATTAGTTACTTGTCACATCATCTATTTTGCCTGAATACGTGTGATGTTACCACATATGTT
ACTTCCATTGTGGGTAGTCTAAGTCACACGCAACTGATTATTACTTGTGCCCCTCAATTTCTCTGCATGGTGAGCAGCAG
CGTCCGAGGCCAGTTGCGGCGTCCCCGCGAGGCCTAGCGAGGAGTGAGCTGGCGACTACCCAGCTGGCCACGGCGTCGCA
GATGGAGGCGAGTTGGAGGTATGTCGGGTTCAGGTCGGAGC-CTTTTCATGCTAACTGCATGTCGGATTGGACCGTGCCT
ATGCCGGAGATGCGAACTCCGAGGCATGGGAAGTCAGGGCTCGGATAGGA------------------------------
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>chr7A_1241
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--------------------------------------------ACACCTAGCTA------GGTAGCATGCAACACTCT-
---CGATGCATGCAACCGTGTATCAGGAGTCCAGGACACGAAGGTTCTTGAATGGTTCCTCTT-TTATCATGCAT-----
GTTGTGTTGATTTAGAGGAGGACGAATAATTTTTTGCTTGGCAGATGTAGATCTATGTGCTCGTGTGTGCTCGTGTGTGC
GCGTGTGGTGTGCGGGGATGGCAGGGATGCGTCACAGATGTATTTGTTGTTTGCTGCCATATTAAGCGATGATGATGAAT
GTATATATAGTGTGTTTCCGTGCATATGTGTTCTGTTTGATCAGTACTTCAGCGGATTTGCTAAA---------------
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-----------------------TCACAGGCAACTGATTATAGTTTTTGCGGCTCGATTTCGCGGCGCGGTGGATAGCAG
-GTCCGAAGCTGGCTGCGGTGTCCCCGTGAGACCTAGCAAGGAGTGAGCTGG------CCCAGCTGGCCACGGCGTCGCA
GATGGAGGCGAGTCGGAGGTTTGACGGGTTCAGGTCGGAGGTCTTTTCATGCTAACTGCATGTCGGATTGGACCATGGCC
ATGCCGGAGATGCGAACTCCGAGGTGTGGGAAGTCAGGGCTCACATAGGTTAATGCTTCTAAGACGGCGACCGGAAGAAA
GGCAGGGGACAACTGAAGGAAGAGTGAATGGACCGGGAGAGAACATACAGTGGAGATAGAACGGTTGGAGGAGGAAGATT
ATCTACCCGTTTGTTTTGATTCAATGTGAGGGGGCATTCACTTCCAAATGAACAGAAACTGAAGAAGACGAAAAATAACC
CAAATGATAAGTATCACACATGTGACACAAAGCAACATAGTCTGAACACCCTTATTACCATCCATTTTGACACATCAAAC
AGATGATATCAGCGG-------------AATCTTTTTGGTTTTTTGGACTTAAAAATATTT-ATCTCTTAAATAAAAACC
CAATAAAAAAAATCTGTTTTCATCATTAAATCCGTCGCAAAGAGATCTGCAAAACTAGATCTCATATTGATAT---
>chr2A_1276
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-----ATGCATGCAACCGTGTATCAGGAGTCCAGGACACGAAGGTTCTTGAATGGTTCCTCTT-TTATCATGCAT-----
GTTGTGTTGATTTAGAGGAGGACGAATAATTTTTTGCTTGGCAGATGTAGATCTATGTGCTCGTGTGTGCTCGTGTGTGC
GCGTGTGGTGTGCGGGGATGGCAGGGATGCGTCACAGATGTATTTGTTGTTTGCTGCCATATTAAGCGATGATGATGAAT
GTATATATAGTGTGTTTCCGTGCATATGTGTTCTGTTTGATCAGTACTTCAGCGGATTTGCTAAA---------------
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-----------------------TCACAGGCAACTGATTATAGTTTTTGCGGCTCGATTTCGCGGCGCGGTGGATAGCAG
-GTCCGAAGCTGGCTGCGGTGTCCCCGTGAGACCTAGCAAGGAGTGAGCTGG------CCCAGCTGGCCACGGCGTCGCA
GATGGAGGCGAGTCGGAGGTTTGACGGGTTCAGGTCGGAGGTCTTTTCATGCTAACTGCATGTCGGATTGGACCATGGCC
ATGCCGGAGATGCGAACTCCGAGGTGTGGGAAGTCAGGGCTCACATAGGTTAATGCTTCTAAGACGGCGACCGGAAGAAA
GGCAGGGGACAACTGAAGGAAGAGTGAATGGACCGGGAGAGAACATACAGTGGAGATAGAACGGTTGGAGGAGGAAGATT
ATCTACCCGTTTGTTTTGATTCAATGTGAGGGGGCATTCACTTCCAAATGAACAGAAACTGAAGAAGACGAAAAATAACC
CAAATGATAAGTATCACACATGTGACACAAAGCAACATAGTCTGAACACCCTTATTACCATCCATTTTGACACATCAAAC
AGATGATATCAGCGG-------------AATCTTTTTGGTTTTTTGGACTTAAAAATATTT-ATCTCTTAAATAAAAACC
CAATAAAAAAAATCTGTTTTCATCATTAAATCCGTCGCAAAGAGATCTGCAAAACTAGATCTCATATTGATATATT
>SNPs
---S---------------------------------------------------------------------S------
-------------------------S------------------------------------------------------
------------------------------------S----S-----------------S------S-S-----------
----------S---------------------------------------------------------------------
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-----------------------------------S------------------------------S-----SSSS--S-
-------S---------------------------------SSSS-----------------------------------
-----S------------------------------------------------------------S-------------
------------------------------------------------S-S-----------S-----S-----S--S--
-------SS------------------------------------S------------------------------S-S-
---------------------------------------S----------------------------------------
------------------------------------S-S------------------------S----S-----S-SS--
--S---------------------------------S-------------------------------------------
-----------------------------------------------------S--------------------------
---------S--------------------------------S---------------S---------------------
---------------------------------------------------------------------SSSSSSSS---
--S------------------------------------------------------S----------------------
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-SS-----------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------S-----------------------------------------
------------------------------------------------S--------S-----S----------------
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--------------------------------------------------S---------S-------------------
-----------------------------------------------------------------------S--------
-------------------------S-------------------------------S---S---------S--------
----------S----------------------------------------------------S-----------S----
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--------------------S---------------------------------------------------------S-
----------------------------S-----------------SSS--------------------SS---------
---SSSS-SS-SSSSSSSSSSSSSSSSS---S-----------------------------S----------------S-
-S-SSS-------S----------------------S--------------------------S---------S--
>forward_715
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------------------------------------------------------GCTTCATCAGCTGTTCAGCAC-----
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>reverse_2186
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-------------------------AGGTTCAGGTCGGAGGTCTT-----------------------------------
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