>input_sequence_85954
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--------------------------------------------------ATGTCGTGGCTGCAGTACGCGGCGACCCGG
AGGCAGCGCGCCGCCACGGCCTGCCTCTTCCTCACCGGCGCCGCGCTCATCGCCGCCGCCGCGCGCCTCTCCTACGCCAA
CATCGAGCCCCAGCGCGCCAAGGCCGCCCAGCGCCGCAAGGTCCTCGAGGACTTCATCGCCCGCAAGCGCGCAGCCGTGG
CCGGACCCGGAGCCGAAGCCGGAGCAGGCTCCCACCCCCAGCCAGATGCCCCCAAAACCTAG------------------
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>chr6A_1_TraesCS6A01G338700
GACGCCATTAACATCTTCATTGCAGATCTCCGTGCAATG--GCCCTACGCTTGGCGCCTTCGCTTCCTCCACCACCGCGG
AG-CCGGATTAGGCACTTGGTGCCGTTGTGGTGTGGCGTGGCAGGGCCGATTGGGGATCGGAGCCTCCCTTGGCCTGGGC
TACCTTTTCTTTT-TTTAGGGCTTGTTGAGTTGTGCCCTCAACAAAATCCTCTTGTACTTTGTTTGTGTGCTACGTGTGT
GGTTTGAATATTTATGTTGGATCTTTGTGGCTCTGGTGGTTTGCTTTATATATAAAGTGGGGCAAAAGCCTTTTTTAATA
AAGTGGGACACTGATGATTCTCCATGGAATCTATCATTGTCAATCTTCCTTGGACGAAGTTTCTTTTCCAATTTGAGCAT
AAGGACTCAAACAAGGAACCTCATTCTATAGCTAATGATCTATGTTTTTTTCCGACGGGAGGAAAGGTTCCTCACCTGAA
TTTTCATTTTAAAACAGGCTAAATCCAAGATCGTTTTAAATGAGGGAGGAGAGGGGCAAAAACCAGATGAACAAGAGAGA
GACAAATGAGGAGAAAGTCAGAGACTACAAACTGGTAGGACGGCCGGCAAGGCGATATAGGGCCGCGATCCAGATGTCGA
CACCACTATGAAGATCCATCCTTAACCTCG---------------------------------------------AGATC
ACGAAACACAAACACCAATATTACATCTTCCTTTCTGGTGTTTTTAATTTGGTCTTAATCGCGAACACTACCTCAACGTT
TGTACGTACGTACGAACTGCACACG---TA--------------------------------------------------
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--------------------------------------------------------------------CTAATCTGTCAT
GCCAGCGACGATCCCGTTCTTGCTCTGCTCGGCATTCATGCATGCTCTGCTTTAGCCATAGCCTGAACGTAAGGAACTCT
GCTCCCCGTTTGCTCCGCTCTCGACACGCCAAGACGCATTCTGCACCTCCCGTCTTCGCCAGTCCTTTTGCGCTAACCAG
CCCCATCCCGTCTCCCACGCTCCCTGCCCTACGACGCTAGAGGAGGCGACATGTCGTGGCTGCAGTACGCGGCGACCCGG
AGGCAGCGCGCCGCCACGGCCTGCCTCTTCCTCACCGGCGCCGCGCTCATCGCCGCCGCCGCGCGCCTCTCCTACGCCAA
CATCGAGCCCCAGCGCGCCAAGGCCGCCCAGCGCCGCAAGGTCCTCGAGGACTTCATCGCCCGCAAGCGCGCAGCCGTGG
CCGGACCCGGAGCCGAAGCCGGAGCAGGCTCCCACCCCCAGCCAGATGCCCCCAAAACCTAGCCATGCATCGGCG---CC
ACGACACCACCCGGGATCA-AGCTTGAAGCTATCATCCGAGCAA-------------------------AAAGGGGATCG
GTTTTTTGTGCAGGCCCTCCGTAGTTGCAAGC---TTTCTTCAGCAAAGGGGGCGATTGTAATGGCCATCGATTTCTGTA
GCACTGGGAGATTTCTTTACCCTCTCTGAATTGTGGTGCTAATTTGGTTTGCTGTAGTT---------------------
------------CTGCCGAGTGCTGTAACATGACTTGAATAATTTTCCCTGGCTAAATGGCAGTGATACATTCATAC---
---CAGGGTGCTGTGCCTTGTTCAGCTGCGCAATCGCATATCTTGCATACATTTCTGAAGATTTTCTAAAGG--------
---CTAGATCTGCAACTCTAATGGGTTCCTACAGCAG-------ACTTCAGAGTTGCGCAATCGCACATCTTCCATACAA
AGCTAATGGGTTCCCTAGCAAAATGAGGGATATCCACTCTATGTTACAGTTGCTACCCAATTGCCACAAGCATGT--ATG
TTTGAACTTCTA-AAGTTTGCTGTGCACAGTATGGTCTGGTCTGAACTCTCAATGTTTTTATCAAAGCAATCAGCATGTT
CTCC----------------------------------------------------------------------------
--------------------------------------------------------ATCTAACAATGTCATGTGCTTCAA
CTTCACACCGGGCTAGCAAACAAAGGATTGCCTTA----ACTGATTGATTTTCTACCTTTTTATCCCTTCAATGCTATGA
TGAATAATTACCCTTTCCCCTGACACTTCTGAGCTTATGTGCAGCAGGACAAAGCAGGAAATCCTGAAGAACTGAAAGTT
GGCACCTACATTTTGTCACAAACACTAATACTTT---ACATCTTTGTCCATTTATTGTTTTCAGTGATTTGGATTTTACC
ATCAACCATGCAAATATGAACCTTACCTTTTATTTGCCTTCAGTGTGAGCTGTGGGAAGGATCTGTGGTCAGTTGA-AGG
ATTATGGTTCCGACGTTGAAGACAATCAGATCTCAAGGGTGTAAGTACCAGGGGAATTTGTGTCAAACAGAGTCAAGTAG
ATTGCCCACCTTAC
>chr6D_1
GACGCCATTGATACCTTCATTGCAGATCTCCGTACAATGGCGCCCTACGCTTGGCGCCTCCGCTTCCTCCGCCACTGCCA
TAACCGGATTAGGCACTTGGTGCCGCTGTGGTGTGGCGTGGCAGGGCCGATTGGGGATCGGAGCCTCCCTTGGCCTGGGC
TACATTTTCTTTTCTTTAGGGCTTGTTGAGTTGTGCCCTCAACGAAATCCTCTTGTACTTTGCTTATGTGCTACGTGTGT
GGTGTGAATCTTTATGTTGGATCTTTGTGGCTCTGATGGTTTGCTTTATATATAAAGGGGTCCAAACATCTTTTTCGATA
GAGTGGGACACCGATGATTCTCCATGGAATCTAGCATCGGCAAACTTCGTTCGACGAAGTTTCTTTTT-AATTTGAGCAT
AAGGACTCAAACAAGGAACCTCATGCTATAGATAATGATTTTGTCAGG----------------------------TGAA
TTTTCATTTTAAAACTGGCTAAATCCGAGATCGTTTCACAAGAGGAAGGAGAGGGGCAAAAACCAAACCAACAAGAGAGA
C---AATGAGTAGCAAGTCCTGGTGCC-----------------------------------------------------
---------------------------------------------CGTCATCCCTGCAACTCTTGAGCAGAGGGGGG---
-----------------------CATCTTCCTTCCTCGTGCC------TTGCCGTTAATCGCGAATACTAGCTCAACAAT
TGTACGTCCA----AATTGCACACGTACTAAAAGCAACTCCAACGGGCCGACCCAAACGGACGGCGCATTTGTCCGCTTT
TTATTCGTTTGGGTTGGCCGCCCGCCCTGCGTCTACCCAGTTTTGCATTTGGGTCGGCAATGCGCCCAACGCGCCGACCC
ATTTCATGTCTGCATTCAATGTTTTTTATAAAAGGCCCGCGGCCGATCATGCCAGGCCATGTCTCATGCCGGCATACAAT
GCCGGTTTCAGAAAATATCACCACAGTTCATGCTGACGTGCTCGCCAGCCGGCCGACACACATGCCAGCACACAAAAAAG
GATGGGACTTGAGTTCGACCACGCCATCGTGGCTCCAGTGGTCATGCGGGCACACCTACCGGCATACAAAAAAGATGGCG
CTCGCCGCCATAGATCACTCGTCGTCGAACTTGAGCATGTCGGCCTGCATCTTCTCGAACCACTGCCTCTTCCTTGGCGA
CACGGTGTTGAGATCCACCTTCATGATCTCCACCCCGGTCATCATGCTCGCGAGAGCCACTTCTTTCGCCTTGGTCTTGG
CGTTGGCGGCCTCGATCTCTAGCATCTTGGTTTGCTTCTCCGCCTCTAGCTCGAACATCTTGGCTTGCTTCTCAGCGTCC
ATCTCAAGCCTCCTCTTTTGGATCTCCATGAAAGCATCCATTTGCTCCGCCTTGAAACGCCGGCGCTCCTCCTCCCTTGA
GTCCTTCTTATTCATCATGCCGTCCACGCTTGCGATCAAGGCGTTGGTGTCCGCATCTCGCTTGTTCTCCTTCTTGGAGT
TGGTCTTCCCCCGCGGCCGTGCCGGCTCACCCTCCCCAACATCCTCCACGGCTTTCTTCCCCCCACGCGCCTTGAGTGCG
GCATATTGCGTCTTGCACTTCTCCTCGTCCTTGATGACCCGATAGCAACGGGAGAGGTTGAAGCACTTGCCATTGTGTTG
AACCTTGAATGCCTCCAAAGCTTGAAATGCCTACAAAATGTTTCCATGTAGTCATCGTCGGTGGCGGACGGCATTTCCTC
GAACAGGTTGCGGGCGTCCGGAAGCACGCCGGCCGGCGTCTGCCACGCGCGTTTCCTCGCGCTGCCGGATGACGAGCCAC
CGGCCACCGGGGTGGCGTTGAGGTTGATGGGCGCGGGTGCGGGCGTGGAAGGCGCGACCACGCTCACGTCGGGCGAGCAC
TCCCCGGAGAGGCGGGAGGCGTGCGGGTAGACGTGGAAGGCGGGGATCGAGTTGCAAGCCGACGCGCGGGGCGAGACGGG
CAGCACCATCCGAGGAAACACCGACGAGCCGGTGCTGGCCGCGGCGACGGCGGCTTGGACGGGGCCGTGCTGGCTAGGGT
TTAACCCTAGCATGTAGAGCGCATCCCTCGTTGCCGCCGCGACGCGGGCGTTGGTGACCTCCTGCGGCGGCGACGACGGC
GGCCTGCGCGACGGCCTCATTCCTCGCGTCCGCGGCGTGCCTCCGGCCCTTCCTCTTGGCCGACTCCTTGCCCGCTGTTC
GGGCGTCAGCGTCTTCTTTGGCTTGGTCGCGGCGGCGGTCTTGCGCGGGGCACGAGGCTTGCCTTTTCTGGAGGGGGCGG
TGACGCCAGACGAGGCGAGGAAGACGAGGCCGGCGACGGACGAGATGGGTCGCCCCGTTGGAGTTGCTCTAATCTGTCAT
GCCGTCCACGATCCCCTTCTTGCTCTGCTCGGCATTCAAGCATGCTCTGCTTTTGC--TAGCCTGAACGTGAGAAACTCT
GCTCCCCGTTTGCTCCGCTCTCGACACGCCAAGACGTATTTCGCACCTCCCGTCTTCGCCAGTCCTTTTGCGCTAACCAT
CTCCGTCCCGTCTCCCACGCTCCCTGCCCTACGACGCTAGAGGAGGCGACATGTCGTGGCTGCAGTACGCGGCGACCCGG
AGGCAGCGCGCCGCCACGGCCTGCCTCTTCCTCACCGGCGCCGCGCTCATCGCCGCCGCCGCGCGCCTCTCCTACGCCAA
CATCGAGCCCCAGCGCGCCAAGGCCGCCCAGCGCCGCAAGGTCCTCGAGGACTTCATCGCCCGCAAGCGCGCAGCCGTGG
CCGGACCCGGAGCCGGAGCCGGAGCAGACTCCCACCCCCAGCCAGATCCCCCCAAAACCTAGCCATGCATCGGCGGCGCC
ACGGCAACACCAGGATCCA-CGCTTCGAGCTTTTCGAAT---CAGGAGGAGTTCGTTCACTATCCGAGCAAAGGGGATCG
TTTTTTTTTTGTGTGCGTCTTGCTGCACATTGGAATTTCTTTAGCGAAGGGGATGACTGAGATGGCCATCGACTTCTGTA
GCACCATGGTACCTTCT----CTGTATGAATTGTGGTGCTAATTTGGTTAGCTGTAATTTTTCAACTGATTCCTGGTCGC
AGTTTAGTAATGCTGCCGAGTGCTGTA-----------------------AGCTAAATGGCAGTGATACATTCATAC---
---CAGGGTGCTGTGCCTTGTTCAGTTGCGCAATCGCATATCTTGCATACATTTCTG-----------AAGA--------
---CTAGATCTGCAACTCTAATGGGTTCCTACAGCAGTGTTCAGACTTCAGAGTTGCGCGATCGCATATCTTCCATACAA
AGCTAATGGGTTCCCTAGCTAAATGAGGGATATCCACTCTATGTTACAGTTGCTACCCAATTACCACAAGCATGTT--TG
TTTGAACTTCTC-AAGTTTGTTGTGCACAGCATGGTCTGC----AACTCGCAACGTTTTCATCACAGCAAGCAGCATGTT
CTTCGGCTGCGTTCGGTTTCTCTCGGCTCGTTTAACTCTGCTCCGGGAGTGGACCAGACTTTAGCTTAATTTTATGGAGC
TGCCAAAACCCAGCTCCCCAACTTCACGGAGCGCGCAAGCTCCGAACAGGGCCTTGATCTAACAATGTCATGTGCTTCAA
CTCCACACCGGGCTAGCAAACAAAGGATTGCCGTA----ACTGATTGACGTTCTATCTTTTTATCCCTTCAATGCTATGA
---ATCATTTCCCTTTCCCCTGACACTTTTGAACTTATGTGCATCAGGACAAAGCAGGAAATCCTGAAGAACTGAAAGTT
GTTACCTACGTCTTGTCACAAACACTAATACTACTTCACATCTTTGTCCATT-ATTGTTTTCATTGATTCAGATTTTCTC
ATCAACAATGCAAATATGCATCTTACAGTTTGTCTGTCTTCAGTGTGAGCCGTGGGAAGGATCTGTGGTCAGTTGAGAGG
ATTATGGTCCCGACATTGAAGATAATCAGATCTCAAGGGTGTAAGTACCAA-GGAATTTGTGACAAACAGAGTGAAGTAG
CTTGTCCACCTTAC
>chr6B_585
AAACTAGGC-----------------------------------------------------------------------
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------------------------------------AGGACGGCCGGCAAGGCGATATAGGGCGGCGATCCAGATGTCGA
CACCACTATGAAGATCCATCCTTAGCCTCACGCGACACAAGCCAGCGTTATCCCTGCAACTCTTGAGGGAGGACCAGATC
GCGAAACACAAGCACCAATGTTACATCTTCCTTCATCGTGTCTTTAATTTGCTGTTAATCGCGAATACTAGCTCAACAAT
TGTGCGT----ACGAATTGCACACGTACTA--------------------------------------------------
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--------------------------------------------------------------------CTAATCTGTCAT
GCCAGCGACGATCCCCTTCTTGCTCTGCTCGGAACTCGTGCATGCTCTGCTTTTGC--TAGCCTGAACGTGAGAAGCTCT
GCTCCCCGTTTGCTCTGCTCTCGACACGCCAAGACGTATTTTGCACCTCCCGTCTTCACCGGTCCTTTTGCGCGAAGCAG
CTCCATCCCGTCTTCCACGCTCCCTACCCTACGACGCCAGAGGAGGCGACATGTCATGGCTGCAGTACGCGGCGACCCGG
AGGCAGCGCGCCGCCACGGCCTGCCTCTTCCTCACCGGCGCCGCGCTCATCGCCGCGGCCGCGCGCCTCTCCTACGCCAA
CATCGAGCCCCAGCGCGCCAAGGCCGCCCAGCGCCGCAAGGTCCTCGAGGACTTCATCGCCCGCAAGCGCGCAGCCGTGG
CCGGACCCGGAGCCGGA------GCAGACTCCCACCCCCAGCCAGATCTCCCCAAAACCTAGCCATACATCGGTGGCGCC
ACGGCACCACCCGGATCGCGCGCTTCGAGCTTTTTCGAATCACAAGAGGCGTTCGTCCACTATCGGAGCAAAGGGGATCG
GTTTATT--TGTGTGCTTCTT--TGCACATTGGAATTTCTTTAGCAAAGGGGACGACTGAGATGAGATGGCCACCGG---
------TGTTATCTCCT----CTGTATGAATTGTGGTGCTAATTTGCTTAGCTGTAATTTTTCAACTGATTCCTTGTCGC
AGTTTAGTAATGCTGCCGAGTGCTGTATCATGACTTAGTTATTTTTTCCTAGCTAAATGGCAGTGATACATTCATACTAT
TACCAGGGTGCTGTGCCTTGTTCAGTTGC-CAATCGCATATCTTGCATACATTTCTG-----------AAGATTTTTTAA
AGACTAGATCTGCAACTCTAATGGGTTCCAACAGCAGTGTTCAGACTTCAGAGTTGTGCGATCGCACATCTTCCATAGAA
AGCTAATGGGTTCCCTTGCTAAACGAGGGATATCCACTCTATGTTACAGTTCCTACCCAATTACCACAAGCATGTACATG
TTTGAACTTCTAAAAGTTGGCTGTGCACAACATGGCCTGC----AACTCTCAATGTTTTTATTAAAGCAAACAGCATGTT
CTTC----------------------------------------------------------------------------
--------------------------------------------------------ATCTAACAATGTCATGTGTTTCAA
CTTCACACCGGGCTAGCAAACAAAGGATTGCCTTAATTAACTGATTGATGTTCTATCTTTTTATCCCTTCAATGCTATGA
---ATCATTTCCCTTTCCCTGACACTT-----------------------------------------------------
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>SNPs
---------S-S-S-------------------S-------------------------S----------S----S--SS
SS-----------------------S------------------------------------------------------
---S---------------------------------------S------------------S--S--------------
---S-----S-------------------------S---------------------S--SS----SSS------SS---
S----------S---------------------S---S-S---S----S--S---------------SS-----------
------------------------S------S-------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
---------------S----------S---------S-S-S----S-------------------S-SS-----------
SSSS------S--S-----SSS-SSSSSSSSSSSSS---------------------------S----------------
------------------------S----S--------------------------------------------------
S----------S-------S-------------S--S----S---------S-S-----------S----S------SS-
-------S-SS-----S---------------------------------------------------------------
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---------------S-------------------------------------S--SS------------S--S------
------------------------------------S---S---------------------------------------
-S------------------------------------------------------------------------------
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---------------S-----------S-------------------S--------------------------------
---S----------SSS---S----SS----S-SSSSSSSSSS-------------------------------------
-------S-SSS-SS-S--SSSSSSSS--SSS---------S----------S---S--SS-----------S-------
----SSS-SS--S--S-SSSS--S-S-----------------------S------S-----------------------
---------------------------S--------SSS--S----S---S-----------------------------
-------------------------S-------------------------------SSSSSSSSSSS---S--------
-----------------------------------------------------------S--------------------
-------------------S------------------------------------------S-----------------
------------------------------S--------SSSSS--------------------------S---------
--S-----------------------------------------------------------------------------
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-------------------------------------------------S-----S------------------------
SSS--S---S------------------S---S----------S------------------------------------
-SS------S-S--------------------SS------------------S----------S-----SS------SS-
------S-----------S-S-----SS---S-S--S-------------S-----------------------------
--------S-----S-------S---------------------------SS----------S----------S------
S---S---------
>forward_244
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----------------------------------------------------------------TGTGTGCTACGTGTGT
GGTT----------------------------------------------------------------------------
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>reverse_3247
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----------------------------------------------CCCTGGCTAAATGGCAGTGA--------------
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