>input_sequence_85941
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-------------------------------------------------------------ATGGTTTGTTGCTCTCGGC
GGCGAGACACGCCGGCGGCCGGCGGGCTGCTCGGGTCGTGGCTCCTCATCGCCGTCCTCGTCCAATCCTCGCTCCTCGGA
TCCACCTTCCTCTTGGCCGTGGACGCTGCTCGCACGTCGGCGTTCATGGCCATGGCGCCGCTACCAGCTGTGGCTATGGC
CCCCTCGCCGTCGGGGCTCAAGGACGACAAAAGGCGTGTGCCGACGGGTGCAAACCCTTTGCACAACAGATGA-------
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>chr4B_1_TraesCS4B01G217500
TTCATCAAGACAGTCGACGACGATTAGAACAGGGCCGAGCAATCGGATAGGCTAAGCTCGGTGGGAAGCCTCATCAGAGC
CAAAAAGAACCCGCCATTCGTCGCCATGTGTGACACTTGCGTCATCCAACCTTTGCCAAGACGCCTCGTTTATGCCATAG
TCATGCACGAGTTCGGACATGCATGTACCGCAATCGCATCGATCCACCACTGCCGCTCACCTTGTTTTCGCTGCCCTGCT
TGCCGCCTCTACCACAGGGTAGGCGACTTAGCTAGTATTAAACCTCCGTTCAGTAGTCATTATGTATGTACGGCTATTTT
GTAACCGACTTAAAGTAAAGCATCATTTCGTGGGGAAAAATGCTAGACATCAAGGCGAAACATCTCAGCTTAAGCCGTGA
GAGTAGTGTGTCATACTGTCAACTAGGAACAACCGGCTTCACTTCGGTGGTCTTCAAGCATGTTCATCGGCACCGTAATG
TTCTAGCTCATGTTTTAGCTAAGTTGTATATAAACTTTATTGGTCTTTGTATTTCTCATTATACTCCAGATTGCATCTGG
GAGACTCGGTGTAATTTTGTTGCTCAATCAATAAAATGCCAGACGTTCACAAAAAAGTGTGTCATACTGTCATCTCGTCG
TGCACGTCCATGGCGCGCCAGTAATACAACCGTACTAGTTGGTGACACTGATATAGTGTTAGATCTCGGTAGGAGAAGTC
GCTTCGCTTCACCACTTTTATACTCGCCGATCGAGTACACCGCCACCCACACTCCT-AAGTCCTCAAATCAACTCTC--C
AGTCCAAGCTACTAGCCAGCGAAGACGCCTCATCCTCCCGACGCTCTCCCAGTCCCTCCTCCCTGTTCATGTGTGCCCGA
ACTCCTCGCCACAGCCTG--------------CCCTCCCAAAGCTTCTTCAACTGCCGCCGAGAGGTCGCGAGCCCTGCA
CCAGCCGTGTAATCTGCACCTCCGCAGTAATTGAACCGAGAGAGAGGTAG----TATAGCTATGGTTTGTTGCTCTCGGC
GGCGAGACACGCCGGCGGCCGGCGGGCTGCTCGGGTCGTGGCTCCTCATCGCCGTCCTCGTCCAATCCTCGCTCCTCGGA
TCCACCTTCCTCTTGGCCGTGGACGCTGCTCGCACGTCGGCGTTCATGGCCATGGCGCCGCTACCAGCTGTGGCTATGGC
CCCCTCGCCGTCGGGGCTCAAGGACGACAAAAGGCGTGTGCCGACGGGTGCAAACCCTTTGCACAACAGATGAGGCGGGT
CGCAGGATTGTGGCACGCATAGCGAAGCTGCTGATATCCTGGGTGAGAGGGAGATACAGTGCGTGTATCATTCAGAGCAT
GCAGGCTGATCAACTTGCGATCG---ACATTCGACAGTGCTGCGAGACTCCGTAAGCTTCTAATTCCACCTCTTTTCTTC
TCCGCGCCAAGCCGTGAAGTCATCGATCA-----------------ATTGATCAGCTGGGGGTCTGGTCGAGGAGAAAGG
AAGCTGAATGAGAAGGGTACTGGGCTGCGCTTATATTAGTTAGCTAGGTATAGTACGCCCTTGTTGTTTTGTAGCAGTAT
GGCGTTCTTGATGCTTCGAGTAAAAACATTCATGTAATCATTTGTTGTTGTTTTTGCCCTCCGGGT--CTTCTCATTTTT
CTTCTTCTTCTTGACGATGGATCAATAAATACACAGCTGTTGCGATAAGGTAAAGGAAGGTCAACGTCCGTAGTGACAAA
TGCGCCTGCACCTGACATTAGTTGGGGTTGAGCTTCTTCTTCTTCTTCT---TCCATGCACGATGATGCATGGAGACAAG
CCGCTGACAAGGTAAGAAAGAAAGGCCTCGTGCTTCAGAACTGGTTGTACGTAGTAC------CAGTGTGGACGATCCCA
TCTGGTTTCAGTCAAAGCGAGGCCCCATGACGCTAGTAGAAAGGCACTAGTAGCTAGTGGACACATCGTGGCCAAGGAAT
TTGACCTCAAAACCATTTGGCCAGCTGCAAATTTAAAAGAAACAAAGAAACAAACTTCCAGTTGCAAACGTGGTCT--CT
GCCCGATTTCAGATACTACTGCCATCGTTACTCATTCAGTAGTATACATACTGTATTCAATTAGGTCAGATCTGGATTAC
TCGCTGCTACTACTAGCACTGGTACTTGGGAATAGTATTGTAACGCAGCAATTGATGATCCTTGTTTGAAGCGCATCAAT
TCCGTTGTCCAAACGGAGCCGTGTTTGTGGGATCCATGGGCAGGCTTGGCGTGTTGCTCTTGGAAG
>chr4D_617
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--------------------------------------------------------GTGTGTCATACTGTCATTTCGTCC
TGCAAGGCCAT--CGCGCCAGTAATACAACCGTACTGGTTGGTGAGACGTG----GTGTTAGATCTCGGTAGGAGAAGTC
GCTTCGCTTCACCACTTTTATACTCGCCGACCGAGTACACCGCCACCCACACTCCTCAAGTCCTCAAATCAACTCTCTCC
GGTCCAGGCTACTAGCCAGCAAA----------CCTCCCGACGCTCTCCCAGTCCCTCCTCCTCGTTTATGTGCGGCCGA
ACTCCTCGCCACAGCCTGCCCCCGCCACCCTGCCCTCCCAAAGCTTCTACAGCTGCCACCGAGAGGTCGCGACGCCTGCA
CCAGCCGTGTAATCTGCACCTCCTCAGTAATTGCAACGAAAGGGTGGTAG----TATAGCTATGGTTTGTTGCTCTCGGC
GGCGAGACCGGCCGGCGGCCGGCGGGCTGCTCGGGTCGTGGCTCCTCATCGCCGTCCTCGTCCAATCCTCGCTCCTCGGA
TCCACCTTCCTCTTGGCCGTCGACGCCGCTCGCACGTCGGCGTTCATGGCCATGGCGCCGCTACCAGCTGTGGCTATGGC
CCCCTCGCCGTCGGGGCTCAAGGACGACAAAAGGCGCGTGCCGACGGGTGCAAACCCTTTGCACAACAGATGAGGCGGGT
CGCAGGATCGTGGCACGCATAGCGAAGCTGCTGATATCCTGGGTGAGAGGGAGATACAGTGCGTGTATCATTCAGAGCAT
GCAGGCTGATAAAATTGCGATCGACGACATTCGACAGTGCTGCGAGATTCCGTAAGCTTCTGATTCTACTTCTTTTCTTC
TCCGCGCCAAGCCGTGAAGTCATCGATCAGTTGATGGGTTTTTGTAATCGATCAGCTGAAT--------GAGGAGAAAGG
GAGCTGAATGAGAAGGGTACTGGGCTGCGCTTGTATTAGTTAGCTAGGTATAGTACGCCCTTGCTGTTTTGTAG---TAT
GGCATTCTTGATGCTTCGAGTAAAAACATTCATGTAATCATTTGTTGTTGTTTTTGCCCTCCGGGG---TTCTCATTTTT
CTTCTTCTTCTTGACGATGGATCAATAAATACACAGTTGTTCCGATAGAGTAAAGGAAGGTCAACGTCCGTAGTGACAAA
TGCGCCTGCACCTGACATTAGTTGGGGGTGAGCTTCTTCTTCTTCTTCTTCTTCCATGCACGATGATGCATGGAGACAAG
CCGCTGACAAGGT----AAGAAAGGCCTCGTGCTTCAGAACTCGTTGTACGTAGTACT------AGTGTGGACGATCCCA
TCTGGTTCCAGTCAAAGCGAGGCCCCATGACACCAGTACAAAGAC---AGTAGCTAGTGGACACGTCGTGGCCAAGGAAT
TTGACCTCAAAACCATTTGGCCAGCTGCAAATTTAAAAGAAACAAAGAAACAAGCTTCCAGTTGCAAACGTGGTCC--CT
GCTCGATTTCAGATAT---TGCCATCGTTACTCATTCAGTAGTGCA-------TATTCAATTAGGTCAGATCTGGATTA-
---------------------GTACTTGGGAATAGTATTGTAACGCAGCAATTGATGATCCTTGTTTGAAGCGCATCAAT
TCCGTTGTCCAAACGGAGCCGTGTTTGTGGGATTCATGGGCAGGCTTGGCGTGTTGCTCTTGGAAG
>chr4A_696
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-------------------------------------------------------GTGTTAGATCTCGGTAGGAGAGGTC
GCTTCGCTTCACCACTTTTATACTCGCCGACCGAGTACGCCGCCACCCACACTACTCAAGTCCTCAAATCAAC---CTCC
AGTCCAAGCTACTAGCCAACAAAGACGCCTCATCCTCCCGACGCTCTCCCAGTCCCTCCTC---GTTCATGTGCGGCCGA
ACTCCTCGCCACAGCTTGCCCCCGCCACCCTGCCCTCCCAAAGCTTCTACAACTGCCGCCGAGAGGTCGCGAGCCCTGCA
CCAGCCGTGTAATCTGCACCTCCTCAGTAATTGAAGCGAAAAGGAGGTAGTATATATAGCTATGGTTTGTTGCTCTCGGC
GGCGAGACACGCCGGCGGCCGGCGGTCTGCTCGGGTCGTGCCTCCTCATCGCCATCCTCGTCCAATCCTCGCTCCTCGGA
TCCACCTTCCTCTTGGCCGTGGACGCTGCTCGCACGTCGGCGTTCATGGCCATGGCGCCGCTACCAGCTGTTGCTATGGC
CCCCTCGCCGTCGGGGCTCAAGGACGACAAAAGGCGTGTGCCGACGGGTGCAAACCCTTTGCACAACAGATGAGGCGGGC
CGCAGGATCGTGGCACGCACAGCGAAGCTGCTGGTATCCTGGGTGAGAGGGAGATACAGTGCGTGTATCATTCAGAGCAT
GCAGGCTGATCAACTCGCGATCG---ACATTCGACAGTGCTGCGAGACTCCGTAAGCTTCTGATTCTACCTCTTTTCTTC
TCCGCGCCAAGCCGTGAAGTCATCGATCA-----------------ATTGATCAGCTGGGGGGCTGGTCGAGGAGAAAGG
AAGCTGAATGAGAAGGGTACTGGGCTGCGCTTGTGTTAGTTAGCTAGGTATAGTACGCCCTTGTTGTTTTGTAGCAGTAT
GGCATTCTTGATGCTTCAAGTAAAAACATTCATGTAATCATTTG---TTGTTTTCGCCCTCCGGGGGGCTTCTCATTTTG
CTTCTTCTTCTTCACGATGGATCAATAAATACATAGTTGTTGCGATAGAGTAAAGGGAGGTCAACGTCCGTGGTGACAAA
TGCGCCTGCACCTGACATTAGTTGGGGCTGGG------CTTCTTCTTCTTCTTCCATGCACGATGATGCATGGAGACA--
---------AGGT----AAGAAAGGCCCCGTGCTGCAAAACTCGTTGTACGTAGTACCAGTGTCAGTGTGGACGATCCCA
TCTGGTTCCAGTCAAAGCGAGGCCCCATGACACCAGTACAAAGAC---AGTAGCTAGTGGACACGTCGTGGCCAAGGAAT
TTGACCTCAAAACCATTTGGCCAGATGCAAATTTAAGAGAAACAAAGAAACAAACTTCCAGTTGCAAACGTGGTCTCTCT
GCTCGATTTCAGATAT---TGCCATCGTTACTCATTCAATAGCTCA-------TATTCAATTAGGTCAGATCTGGATTAC
TCGCTGCTACTA---------GTACTTGGGAACAGTATTGTAACGCGGCAATTGATGATCCTTGTTTGAAGTGCATCAAT
TCCGTTGTCCAAACGGAGCCGTGTTTGTGGGATTCATGGGCAGGCTTGGCGTGTTGCTCTTGGAAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-----S
----S-S----SS-----------------------S--------S--SSSSSSS-------------------------
------------------------------S-------------------------------------------------
--------------------S-----------------------------------------SS---------S-S----
------------------------------------------------S-------------------------------
-----------------------S-----------S---S--S-------------------------------------
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--------S-----------------------------------------------------------------------
-------------------------------------------------------------S----S-------------
--------------------------------------------------------------S-----------------
--------------------------------S-----------------------------------------------
---S-------------------------------------------------------------S--------------
------------------------------------S----------SS-------------------------------
---------------------------S----------------------------------------------------
-------------SSSS-------------------------S-------------------------------------
-------S-----------------------S-S----S----S-SSS----------------S---------------
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--S------------SSSS------------------------SS-SSSSSSS---------------------------
------------SSSSSSSSS-----------------------------------------------------------
---------------------------------S--------------------------------
>forward_98
------------------------------------------------------------------------------GC
CAAAAAGAACCCGCCATT--------------------------------------------------------------
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>reverse_1855
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--------------AGAAAGAAAGGCCTCGTGCT----------------------------------------------
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