>input_sequence_85939
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-----------------------------------------------------------------ATGGTTTGTTGCTCT
CGGCGGCGAGACACGCCGGCGGCCGGCGGTCTGCTCGGGTCGTGCCTCCTCATCGCCATCCTCGTCCAATCCTCGCTCCT
CGGATCCACCTTCCTCTTGGCCGTGGACGCTGCTCGCACGTCGGCGTTCATGGCCATGGCGCCGCTACCAGCTGTTGCTA
TGGCCCCCTCGCCGTCGGGGCTCAAGGACGACAAAAGGCGTGTGCCGACGGGTGCAAACCCTTTGCACAACAGATGA---
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>chr4A_1_TraesCS4A01G086900
ACATCATCTTGGTCTCCGGGACCTTCTATTAGGTTGTGCCCAAGGATGGTACGAGCGCTGGTACGAGCGAGTGCGCTTGT
ATCAAACGCCGTCAAATGCTCTGGT----CTGGCTTCGGCCCCTCTCTCTTGTACGACTTCCTGTGTGAGTGTGGGCA-T
CATAGTCAACGTCATCTCTCTCTGAGTGCCTG------GAATGGCATGTTTCTTTGATGTTTTTCTCCGTAGGCCCAAGA
GATTAATTCCAACATATGTATTAGGCAAATATTGAGAAATTCAACCAAGCTATGATACCACATATGTATTTTAGGCAGAG
GAATAATTTTACCCCAAGGAAGATTAGTCCCAAACCAACTCTAATAGCAAATCATGCAG--------TGCCAATGCAAAA
CATGAATGCATCCTAAACTCAAAGACACAAAACTAAGGAACACATCTACTTACTTTCGGTTTGCTCCCGACAAACGGCGG
GACGTCCACTCGGCCTATCATAATGAGCTAAAACGTGACTAACAAAGTAGTGATTCGGTCGAACATGAGCAATACAAGTA
TTTCGAAGCACCATAAACGGTGTGTCATCCTGTTATTTCGTTCTGCAAGTCCATTGCGCCAGTAATAGTGTTCTGCAAGT
CCATTGCGCCAGTAATAGTCCCTTCGTAAACTAATATAAGAGCTGGTTGGTGAGACGTGGTGTTAGATCTCGGTAGGAGA
GGTCGCTTCGCTTCACCACTTTTATACTCGCCGACCGAGTACGCCGCCACCCACACTACTCAAGTCCTCAAATCAAC---
CTCCAGTCCAAGCTACTAGCCAACAAAGACGCCTCATCCTCCCGACGCTCTCCCAGTCCCTCCTC---GTTCATGTGCGG
CCGAACTCCTCGCCACAGCTTGCCCCCGCCACCCTGCCCTCCCAAAGCTTCTACAACTGCCGCCGAGAGGTCGCGAGCCC
TGCACCAGCCGTGTAATCTGCACCTCCTCAGTAATTGAAGCGAAAAGGAGGTAGTATATATAGCTATGGTTTGTTGCTCT
CGGCGGCGAGACACGCCGGCGGCCGGCGGTCTGCTCGGGTCGTGCCTCCTCATCGCCATCCTCGTCCAATCCTCGCTCCT
CGGATCCACCTTCCTCTTGGCCGTGGACGCTGCTCGCACGTCGGCGTTCATGGCCATGGCGCCGCTACCAGCTGTTGCTA
TGGCCCCCTCGCCGTCGGGGCTCAAGGACGACAAAAGGCGTGTGCCGACGGGTGCAAACCCTTTGCACAACAGATGAGGC
GGGCCGCAGGATCGTGGCACGCACAGCGAAGCTGCTGGTATCCTGGGTGAGAGGGAGATACAGTGCGTGTATCATTCAGA
GCATGCAGGCTGATCAACTCGCGATCG---ACATTCGACAGTGCTGCGAGACTCCGTAAGCTTCTGATTCTACCTCTTTT
CTTCTCCGCGCCAAGCCGTGAAGTCATCGATCA-----------------ATTGATCAGCTGGGGGGCTGGTCGAGGAGA
AAGGAAGCTGAATGAGAAGGGTACTGGGCTGCGCTTGTGTTAGTTAGCTAGGTATAGTACGCCCTTGTTGTTTTGTAGCA
GTATGGCATTCTTGATGCTTCAAGTAAAAACATTCATGTAATCATTTG---TTGTTTTCGCCCTCCGGGGGGCTTCTCAT
TTTGCTTCTTCTTCTTCACGATGGATCAATAAATACATAGTTGTTGCGATAGAGTAAAGGGAGGTCAACGTCCGTGGTGA
CAAATGCGCCTGCACCTGACATTAGTTGGGGCTGGG------CTTCTTCTTCTTCTTCCATGCACGATGATGCATGGAGA
CA-----------AGGT----AAGAAAGGCCCCGTGCTGCAAAACTCGTTGTACGTAGTACCAGTGTCAGTGTGGACGAT
CCCATCTGGTTCCAGTCAAAGCGAGGCCCCATGACACCAGTACAAAGAC---AGTAGCTAGTGGACACGTCGTGGCCAAG
GAATTTGACCTCAAAACCATTTGGCCAGATGCAAATTTAAGAGAAACAAAGAAACAAACTTCCAGTTGCAAACGTGGTCT
CTCTGCTCGATTTCAGATAT---TGCCATCGTTACTCATTCAATAGCTCA-------TATTCAATTAGGTCAGATCTGGA
TTACTCGCTGCTACTA---------GTACTTGGGAACAGTATTGTAACGCGGCAATTGATGATCCTTGTTTGAAGTGCAT
CAATTCCGTTGTCCAAACGGAGCCGTGTTTGTGGGATTCATGGGCAGGCTTGGCGTGTTGCTCTTGGAAGCAGCTGCATC
ACTCGCAGTCCTGCATCTGCATA
>chr4D_1
ACGTCATCTTGGTTTCCGGGACCTTCTATTAGGTTGTGCCCGAGCAC------------GGTACGAGCGAGTGCGCTCGT
ATCAAACGCTGTCAAATGCCCTAGTCTCACTGGCTTCACACACTCTCTATGGTACGATTTCTTGTATG-GTGTGGGCACT
CATAGTCGACATCATCTCTCTCTCTCTCTGAATGCGCAGAATGCCATGTTTCTTTGATGTTTTTCTCCGTAGGCCCAAGA
GATTAATTTCAACATATGTACTAAGCAAATATTGAGAAATTCAACCAAGCTATGGTACCGCATATGTATTTTAAGCAGAG
GAATAATTTTACCCAAC-GAAGATTAGTCCCAAACCAACTCTAATAGCAAATATGCAAACCTAAAATTGCCAATGTGAAA
CATGAATTCATCCTAAACTCGAAGACACAAAAATAAGAAACACGCCTACTTACTTCCGGTTTGCTCCCGG----------
--CGTCCACTAGTTCTACCCTAATGAGCTAAAGTGTGACTAACAAAGTTGTGATTACATCGAACATGAGCAATACGAGTA
T-------------------------------------------------------------------------------
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>chr4D_664
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------------------------------------------CTGGTTGGTGAGACGTGGTGTTAGATCTCGGTAGGAGA
AGTCGCTTCGCTTCACCACTTTTATACTCGCCGACCGAGTACACCGCCACCCACACTCCTCAAGTCCTCAAATCAACTCT
CTCCGGTCCAGGCTACTAGCCAGCAAA----------CCTCCCGACGCTCTCCCAGTCCCTCCTCCTCGTTTATGTGCGG
CCGAACTCCTCGCCACAGCCTGCCCCCGCCACCCTGCCCTCCCAAAGCTTCTACAGCTGCCACCGAGAGGTCGCGACGCC
TGCACCAGCCGTGTAATCTGCACCTCCTCAGTAATTGCAACGAAAGGGTGGTAG----TATAGCTATGGTTTGTTGCTCT
CGGCGGCGAGACCGGCCGGCGGCCGGCGGGCTGCTCGGGTCGTGGCTCCTCATCGCCGTCCTCGTCCAATCCTCGCTCCT
CGGATCCACCTTCCTCTTGGCCGTCGACGCCGCTCGCACGTCGGCGTTCATGGCCATGGCGCCGCTACCAGCTGTGGCTA
TGGCCCCCTCGCCGTCGGGGCTCAAGGACGACAAAAGGCGCGTGCCGACGGGTGCAAACCCTTTGCACAACAGATGAGGC
GGGTCGCAGGATCGTGGCACGCATAGCGAAGCTGCTGATATCCTGGGTGAGAGGGAGATACAGTGCGTGTATCATTCAGA
GCATGCAGGCTGATAAAATTGCGATCGACGACATTCGACAGTGCTGCGAGATTCCGTAAGCTTCTGATTCTACTTCTTTT
CTTCTCCGCGCCAAGCCGTGAAGTCATCGATCAGTTGATGGGTTTTTGTAATCGATCAGCTGAAT--------GAGGAGA
AAGGGAGCTGAATGAGAAGGGTACTGGGCTGCGCTTGTATTAGTTAGCTAGGTATAGTACGCCCTTGCTGTTTTGTAG--
-TATGGCATTCTTGATGCTTCGAGTAAAAACATTCATGTAATCATTTGTTGTTGTTTTTGCCCTCCGGGG---TTCTCAT
TTTTCTTCTTCTTCTTGACGATGGATCAATAAATACACAGTTGTTCCGATAGAGTAAAGGAAGGTCAACGTCCGTAGTGA
CAAATGCGCCTGCACCTGACATTAGTTGGGGGTGAGCTTCTTCTTCTTCTTCTTCTTCCATGCACGATGATGCATGGAGA
CAAGCCGCTGACAAGGT----AAGAAAGGCCTCGTGCTTCAGAACTCGTTGTACGTAGTACT------AGTGTGGACGAT
CCCATCTGGTTCCAGTCAAAGCGAGGCCCCATGACACCAGTACAAAGAC---AGTAGCTAGTGGACACGTCGTGGCCAAG
GAATTTGACCTCAAAACCATTTGGCCAGCTGCAAATTTAAAAGAAACAAAGAAACAAGCTTCCAGTTGCAAACGTGGTCC
--CTGCTCGATTTCAGATAT---TGCCATCGTTACTCATTCAGTAGTGCA-------TATTCAATTAGGTCAGATCTGGA
TTA----------------------GTACTTGGGAATAGTATTGTAACGCAGCAATTGATGATCCTTGTTTGAAGCGCAT
CAATTCCGTTGTCCAAACGGAGCCGTGTTTGTGGGATTCATGGGCAGGCTTGGCGTGTTGCTCTTGGAAGCAG-------
--------TCCTGCATC------
>chr4B_681
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-----------------------------------------------------------GTGTTAGATCTCGGTAGGAGA
AGTCGCTTCGCTTCACCACTTTTATACTCGCCGATCGAGTACACCGCCACCCACACTCCT-AAGTCCTCAAATCAACTCT
C--CAGTCCAAGCTACTAGCCAGCGAAGACGCCTCATCCTCCCGACGCTCTCCCAGTCCCTCCTCCCTGTTCATGTGTGC
CCGAACTCCTCGCCACAGCCTG--------------CCCTCCCAAAGCTTCTTCAACTGCCGCCGAGAGGTCGCGAGCCC
TGCACCAGCCGTGTAATCTGCACCTCCGCAGTAATTGAACCGAGAGAGAGGTAG----TATAGCTATGGTTTGTTGCTCT
CGGCGGCGAGACACGCCGGCGGCCGGCGGGCTGCTCGGGTCGTGGCTCCTCATCGCCGTCCTCGTCCAATCCTCGCTCCT
CGGATCCACCTTCCTCTTGGCCGTGGACGCTGCTCGCACGTCGGCGTTCATGGCCATGGCGCCGCTACCAGCTGTGGCTA
TGGCCCCCTCGCCGTCGGGGCTCAAGGACGACAAAAGGCGTGTGCCGACGGGTGCAAACCCTTTGCACAACAGATGAGGC
GGGTCGCAGGATTGTGGCACGCATAGCGAAGCTGCTGATATCCTGGGTGAGAGGGAGATACAGTGCGTGTATCATTCAGA
GCATGCAGGCTGATCAACTTGCGATCG---ACATTCGACAGTGCTGCGAGACTCCGTAAGCTTCTAATTCCACCTCTTTT
CTTCTCCGCGCCAAGCCGTGAAGTCATCGATCA-----------------ATTGATCAGCTGGGGGTCTGGTCGAGGAGA
AAGGAAGCTGAATGAGAAGGGTACTGGGCTGCGCTTATATTAGTTAGCTAGGTATAGTACGCCCTTGTTGTTTTGTAGCA
GTATGGCGTTCTTGATGCTTCGAGTAAAAACATTCATGTAATCATTTGTTGTTGTTTTTGCCCTCCGGGT--CTTCTCAT
TTTTCTTCTTCTTCTTGACGATGGATCAATAAATACACAGCTGTTGCGATAAGGTAAAGGAAGGTCAACGTCCGTAGTGA
CAAATGCGCCTGCACCTGACATTAGTTGGGGTTGAGCTTCTTCTTCTTCTTCT---TCCATGCACGATGATGCATGGAGA
CAAGCCGCTGACAAGGTAAGAAAGAAAGGCCTCGTGCTTCAGAACTGGTTGTACGTAGTAC------CAGTGTGGACGAT
CCCATCTGGTTTCAGTCAAAGCGAGGCCCCATGACGCTAGTAGAAAGGCACTAGTAGCTAGTGGACACATCGTGGCCAAG
GAATTTGACCTCAAAACCATTTGGCCAGCTGCAAATTTAAAAGAAACAAAGAAACAAACTTCCAGTTGCAAACGTGGTCT
--CTGCCCGATTTCAGATACTACTGCCATCGTTACTCATTCAGTAGTATACATACTGTATTCAATTAGGTCAGATCTGGA
TTACTCGCTGCTACTACTAGCACTGGTACTTGGGAATAGTATTGTAACGCAGCAATTGATGATCCTTGTTTGAAGCGCAT
CAATTCCGTTGTCCAAACGGAGCCGTGTTTGTGGGATCCATGGGCAGGCTTGGCGTGTTGCTCTTGGAAGCAGCTGCATT
ACTCGCAGTCCTGCATCTGCATA
>SNPs
--S----------S---------------------------S--S-SSSSSSSSSSSSS------------------S--
---------S---------S--S--------------SSS-S------S-S------S---S---S--S-----------
-------S--S------------SSS-SSSSS-----------S------------------------------------
--------S-----------S--S------------------------------S----S-------------S------
--------------S-SS----------------------------------SSSSS-S----------------SS---
-------S------------S-----------S----S-----SS----------S-------------SSSSSSSSSSS
SS--------S-SS---S-S------------SS--------------S------SSS-----------------S----
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
S-----------------------------------------S--------------S----------------------
----------------------S---------------------------------------------------------
-------------------S------------------------------------------------------------
---------------------------------------S-----S--------SSSS----------------------
-----------------------------S--------------S------------S----------------------
---------------------------------------------------------------------------S----
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---S-------------------S-------------S------------------------------------------
-------------------S------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------S-----------------------------------------
---------------------S------------------------------------S-----------SS--------
---S------------S--------------------S----------------------S--------------S----
-------------------------------S--S---------------------------------------------
-------------------------------S------S--S-------------------SSSSSS-------------
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----------------------------S-----------S---------------------------------------
SS----------------------------------------S---SS--------------------------------
------------------------------------S-------------S------------------------S----
-------------------------------------------------------------------------------S
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>forward_51
-------------------------------GGTTGTGCCCAAGGATGGTA-----------------------------
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>reverse_1904
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---------------------------------------------------------------GTGTCAGTGTGGACGAT
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