>input_sequence_85931
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---------------------ATGGAGGGGACCTTCATCACGACGGAGCTCCGCGGCGCGCTGGCCAAGGTGGCCGTGTT
CCTGCTCGTCCAGGGTCTGGTGTACCTGATCCTCAGCAACTCGTCGA-------------------------------AC
GTCTTCTCCAAAGATAAGAGGCTCAGGTCCCTGAGCTTCCGGTCGATGCGGTCCATGAGCGTGAGGCGCGTGCTGGCGCC
GTTCTCCGACGTCCCCGTCGGCACCGACGAACCCTCCTCGCCTTCGCTGCTGTCGTCGTGGTAG----------------
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>chr3A_1_TraesCS3A01G305200
CCTCTA-TCCTCGTCCTATGGGCCTCATGGTGGTAATCTCAGTGAGGCAGCATGGGTGGCGTCGCGACCGCGGTGGCGCA
TGCTGGTGGGCGGTGGGTTGGCTT--------CGGTCCGGTT-GGCGGTGGGGTATGGAGTGCGGGAGAAATCT-TTGCT
GG--TTCTTTCGGCTCCGATGCGGTGTCG-------------CCTTTCCTTTTTGAAGGGTGTCGGTGGTCTCCGTCCCC
CACTCCCCTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCAGATAGCAGCGTCGTCGGGGT-CACATTCCTTCTTGGAG
CTGTTGCTTGGTACGTGGCGGATCAGAGCCTTGGAT------CGTGGTGGGTCAATTCCGCAGGGCGCAGCGGTGGCGGG
TCATCTACGCTT--TG-TCGAGCTGCCGTTGTTGGGATTTCTTTCTTCTT------------TTTTGTTTCTTTTTGGCT
TGATGTGCTGCTCGCCTAAGCATTTGTTTTGTGATCGATGTTGATTGCTTTGAGATACAAAGCAAGGAAAAACCTTTTTT
GGATAAGAGGCTCCTTGAAATTAACTCATTTCTGCAAATCCAAATGCTCCAGGAGGCAGGCAT------GAGCAACTCCA
TGGTCAACCCTCGTACACTATACATGCAAGTCAAACCGATCCAACGATGGCACACAACGACACCACATCGAGGTCCAAAT
TAACTGCTAGCACAAGTGGAAAGCGCGAAGACCAACGACTTCTTCCACGGCCACAGCTCCTTCCCGGCAAAGCAACACAG
CCAATCAGAGCCGAAGATGCCCACCAAACCCACAGCACTTCACCACTTGCGTACACAACCAGGTAAAAATAATCACATCT
CGCAACCGCACGAGCCAAACCCACAG-------CTCTTTATAAACCCAGACTGCAAGAGTAAGGCAGACACTACCGCCGA
TAGCACAAACGAGCTGATATCTCACGACACACACACGCACGCGCGCACGCACGCGCGCGCGCACACACCCCTCGTTTGTT
GACATCTCGCCGCCGGTGGCCATGGAGGGGACCTTCATCACGACGGAGCTCCGCGGCGCGCTGGCCAAGGTGGCCGTGTT
CCTGCTCGTCCAGGGTCTGGTGTACCTGATCCTCAGCAACTCGTCGA-------------------------------AC
GTCTTCTCCAAAGATAAGAGGCTCAGGTCCCTGAGCTTCCGGTCGATGCGGTCCATGAGCGTGAGGCGCGTGCTGGCGCC
GTTCTCCGACGTCCCCGTCGGCACCGACGAACCCTCCTCGCCTTCGCTGCTGTCGTCGTGGTAGTCGCGCCGCTCTGCCA
ACCGCGAGGACTGAATTGCTTGGAGAGCTAGCGGTTGCTTAGTTCTGAACGTATGGACAGTTCCTCTGTTCTGCGTTGTC
GTGGATTCTTA---------------------------------------------------------------------
------------------------------------------------------------------------TCGTGGTT
GAGATTTGAGAATCATATTTGAACTCG--TTATGTTAGAT----TAGGTGGGATCTGTATGTGTTGATATGTACATTGAA
TTGAATTTGGTGGATGGATTATTTGATTCTAAAAAAAAGTGTCTGCTCTCAGTTGTGATTATGGTTCTTGAGTTTTTGCT
TCATTTGTAGTAAACTTTAATTCCCGGTTAATACACCATATGCCAATACAACAC--------------------------
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----------------------------------------------TGAGGTATTCAGGTAATTCTTACACTACCATTCC
CCATGAATGATGAGCTATCTCAATCTAAAAAAAAAGTAATTCTTACACTAGACCAGCAATATTAGTCTGTTCTGCTGTAT
TACGTTTTTTTTCACTCGTGCACTTACCAGTGGGACCCACCGGCCAGGAATCTTGTCAACAGAGCCAAAGAATGGTTTAG
AGCTACAGGCAAAAGCCGTAAAGTATGTTTTGTGCACAAAATTGACCTCAACAAATTTTTTTTGACCATTTTGTGATAT-
CTCATTTTAATGACATGACAAAGTAAAACCCAACCCTAGAAAAATGAGACAAAAATCCTATGTTTGACTCAAATGACGAA
ATAGGTCATCATATTCCATAACATGGACCTG-------------------------------------------------
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------------------------------------------------TGGCATAATAATATATTGGATCTCAAATTTCA
ATGTTAATACCAAGCATCATGAAATCGTGCATATTCATTTAAAAAAGCGTAAACAAGCACGCATTTCCTGAGCCGCTCGC
TAGCTAC-------------------------------------------------------------------------
------------------------------ATTCAAAACAAACAGAAAATAAAATTTTAAATTCTGATTTTTTTTTGTAG
ATGTTGATGTTAGTGTAATAAGGATGCTTGACAATTTTCATGCGAAACGGGATAACAATGCTTTGCCAGTGAAAAAAAA-
TAAGTGCAACATTTGGAGGTAACATTTGGTGTTTGACTTGTCTTT
>chr1D_1
CCTCCTCTCCTCGTCCGCTTGGCCTCGTGGTGGTGATCTCGGTGAGGCGGCGTGGGTGGCGTTGCGACCGCGGTGGCGCA
TGCTGGTGGGCGGCGAGTTGGCTGGTTGGCTCCGATCCGGCTGGGTGGTGGGGTT-TGGAGTTGGGAGAAATCC-TTGTC
GG--GCCTTCCGGCTCCGATGCAGTGACGCCTGCGGGTGCCACCATCCCTCCCTGGAGGGTGTCGGTGGTCTCCATTCCC
CACTACCCTCCGCGTGCCAGGGGAAACCCTAGGACACATCCGGGCAGCAGCATCGTCGGCGT-CGCATTCCTTCCTGGTG
GTGCTGCTTGGTACGTGGAGGATCGGAGCCTTGGAT------CGTGGTGGGTCGATCTCGGAGGGCGCAGCTGTAGTGGG
TCATCTGCGCTT--TTATCGAGCTGCCGGTGTTGGCATTGTTTC--------------TTC-TTCTTTTT--CTTTGGCT
TGATGTGCTGCTCGCCCCAGCGTTGC-TCTGTGATCAGTGTTGG-TGCTTTGGAATACAAAGC-----------------
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>chr3D_13
-------------TCCTCTTGGTCTCGTGGTGGTGATCTCAGTGAGGCGGCGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TT--GGTGGGCGGCGAGGTGGCTGGTTGGCTCCGGCCTGGTTGGGCGGTGGGGTT-GGAATTCGGGAGAAATCCCTTGCC
GG--CTTTTCCGGCTCCGATGCGGTGACACCCGCGGGTGCCACCATTCCTTCCTGGAGGGTGTCGGAGGTATCCATCCCC
CACTCCCTTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTTGGCGT-CGCATCCCTTCTTGGAG
GTGCTGCTTGGTACGCGGCAGATCGGAGCCTTGGTA------TGTGGTGGGTCGAGTCCGGAGGGCGCAGCGGTGGCGGG
TC-TCCGCGCTT--TG-TCAAGCTGCCGTTGTTGGCATTTCTTTCTTCTTTGT-----TCT-TTCTTTTCCTTTTGGGCT
TGTTGTGCTTCTCGCCCGAACATTGC-TATGTGATCGATGTTGG-TGCTTTGTAATACAAAGCGGGGGGAAACCCTTTTT
CGGTAA--------------------------------------------------------------------------
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>chr3D_13
-------------TCCTCTTGGTCTCGTGGTGGTGATCTCAGTGAGGCGGCGTGGGTGGCGTCAAGACCGCGATGGCGCA
TT--GGTGGGCGGCGAGGTGGCTGGTTGGCTCCGGCCTGGTTGGGCGGTGGGGTT-GGAATTCGGGAGAAATCCCTTGCC
GG--CTTTTCCGGCTCCGATGCGGTGACACCCGCGGGTGCCACCATTCCTTCCTGGAGGGTGTCGGAGGTATCCATCCCC
CACTCCCTTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGTAGCAGCGTCGTTGGCGT-CGCATCCCTTCTTGGAG
GTGCTGCTTGGTACGCGGCAGATCGGAGCCTTGGTA------TGTGGTGGGTCGAGTCCGGAGGGCGCAGCGGTGGCGGG
TC-TCCGCGCTT--TG-TCAAGCTGCCGTTGTTGGCATTTCTTCCTTCTTTGT-----TCT-TTCTTTTCCTTTTGGGCT
TGTTGTGCTTCTCGCCCGAGCATTGC-TATGTGGTCGATGTTGG-TGCTTTGTAATACAAAGCGGGGGGAAACCCTTTTT
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>chr3D_13
-------------TCCTCTTGGTCTCGTGGTGGTGATCTCAGTGAGGCGGCGTGGGTGGCGTTAAGACCGCGGTGGCGCA
TT--GGTGGGCGGCGAGGTGACTGGTTGGCTCCGGCCTGGTTGGGCGGTGGGGTT-GGAATTCGGGAGAAATCCCTTGCC
GG--CTTTTCCGGCTCCGATGCGGTGACACCTACGGGTGCCACCATTCCTTCCTGGAGGGTGTCGGAGGTATCCATCCCC
CACTCCCTTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTTGTTGGCGT-CGCATCCCTTCTTGGAG
GTGCTGCTTGGTACGCGGCAGATCGGAGCCTTGATA------TGTGGTGGGTCGAGTCCGGAGGGCGCAGCGGTGGCGGG
TC-TCCGCGCTT--TG-TCGAGCTGCCGTTGTTGGCATTTCTTTCTTCTTTGT-----TCT-TTCTTTTCCTTTTGGGCT
TGTTGTGCTTCTCGCCCGAGCATTGC-TATGTGATCGTTGTTGG-TGCTTTGTAATACAAAACGGGAGGAAACCCTTTTT
CGGTAA--------------------------------------------------------------------------
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>chr3B_13
-------------TCCTCTTGGCCTCGTGGTGGTGATCTCGGTGAGGCGGCGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TGCTGGTGGGCGGCGAGGTGGCTGGTTGGTTCCGGCCTGGTTGGGCGGTGGGGTTTGGAGTGCGGGAGAAATCCCTTGCC
GGCTCTCTTCCGGCTCCGATGCGGTGACAGCTGAGGTTGCCACCATCCCTTCTTGGAGGGTGTCGGATGTATCCATCCCC
CACTTCCTTTCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTCGACGT-CGCATCCCTTGCTGGAG
GTGCTGCTTGGTACGCGGCGGGTTGGATCCTGGGTC------TGTGGTGGGTCAATTTCGGAGGGCGCAGCGGTGGCGGG
TCATCCGCGCTT--TG-TCGCGCTGCCGTTGTTGGCATTTCTTTCTTCTTCTTTGTTCTTT-CTCTTTCC--TTTGGGCT
TGTTGTGCTTCTCGCCCGAGCATTCC-TATGT-ATCGGTGTTGG-TGCTTTGTAATACAAAGCGGGGGGAAACCCTTTTT
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>chr1D_13
-------------TCCTCTTGGTCTCGTGGTGGTGATCTCAGTGAGGCGGCATGGGTGGCGTCAAGACCGCGGTGGCGCA
TT--GGTGGGCGGCGAGGTGACTGGTTGGCTCAGGCCTGGTTGGGCGGTGGGGTT-GGAATTCGGGAGAAATCCCTTGCC
GG--CTTTTCCGGCTCCGATGCGGTGACACCTGCGGGTGCCACCATTCCTTCCTGGAGGGTGTCGGAGGTATCCATCCCC
CACTCCCTTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTTGGCGT-CGCACCCCTTCTTGGAG
GTGCTGCTTGGTACGCGACGGATCGGAGCCTTGGTA------TGTGGTGGGTCGAGTCCGGAGGGCGCAGCGGTGGCGGG
TC-TCCGCGCTT--TG-TCGAGCTGCCGTTGTTGGCATTTCTTTCTTCGTTGC-----TCT-TTCTTTTCCTTTTGGGCT
TGTTGTGCTTCTCGCCCGAGCATTGC-TATGTGATCGATGTTGG-TGCTTTGTAATACAAAGCGGGGGGAAACCCTTTTT
CGGTAA--------------------------------------------------------------------------
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>chr7D_13
-------------TCCTCTTGGTCTCGTGGTGGTGATCTCAGTGAGGCGGCGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TT--GGTGGGCGGCGAGGTGGCTGGTTGGCTCCGGCCTGGTTGGGCGGTGGGGTT-GGAATTCGGGAGAAATCCCTTGCC
GG--CTTTTCCGGCTCCGATGCGGTGACACCCGCGGGTGCCACCATTCCTTCCTGGAGGGTGTCGGAGGTATCCATCCCC
CACTCCCTTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTTGGCGT-CGCATCCCTTCTTGGAG
GTGCTGCTTGGTACGCGGCAGATCGGAGCCTTGGTA------TGTGGTGGGTCGAGTCCGGAGGGCGCAGCGGTGGCGGG
TC-TCCGCGCTT--TG-TCAAGCTGCCGTTGTTGGCATTTCTTTCTTCTTTGT-----TCT-TTCTTTTCCTTTTGGGCT
TGTTGTGCTTCTCGCCTGAGCAT-GC-TCTGTGATCGATGTTGG-TGCTTTGTAATACAAAGCGGGGGGAAACCCTTTTT
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>chr7D_13
-------------TCCTCTTGGTCTCGTGGTGGTGATCTCAGTGAGGCGGCGTGGGTGGCGTCAAGTCCGCGGTGGCGCA
TT--GGTGGGCGGAGAGGTGACTGGTTGGCACCGGCCTGGTTGGCCGGTGGGGTT-GGAATTCGGGAGAAATCCCTTGCC
GG--CTTTTCCGGCTCCGATGCGGTGACACCTGCGGGTGCCACCATTCCTTCCTGGAGGGTGTCGGAGGTATCCATCCCC
CACTCCCTTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTTGGCGTACGCATCCCTTTTTGGAG
GTGCTGCTTGGTACGCGGCGGATCGGAGC------C------TGTGGTGGGTCGAGTCCGGAGGGCGCAGCGGTGGCGGG
TCATCTGCGCTT--TG-TCGAGCTGCCGTTGTTGGCATTTCTTTCTTCTTTGT-----TCT-TTCTTTTCA-TTTAGGCT
TGTTGTGCTTCTCGCCCGAGCATTGC-TATGTGATCGATGTTGG-TGCTTTGTAATACAAAGCGGGGGAAATCCTTTTTG
GTATA---------------------------------------------------------------------------
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>chr5D_13
-------------TCCTCTTGGTCTCGTGGTGGTGATCTCAGTGAGGCGGTGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TG--GGTGGGCGGCGAGGTGACTGGTTGGCTCAGGCCTGGTTGGGCGGTGGGGTT-GGAATTCGGGGGAAATCCCTTGCC
GG--CTTTTCCGGCTCCGATGCGGTGACACCTGCGGGTGCCACCATTCCTTCCTGGAGGGTGTCGGAGGTATCCATCCCC
CACTCCCTTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTTGGCGT-CGCATCCCTTCTTGGAG
GTGCTGCTTGGTACGCGGCGGATCGGAGC------CTTGGTATGTGGTGGGTCGAGTCCGGAGGGCGCAGCGGTGGCGGG
TC-TCCGCGCTT--TG-TCGAGCTGCCGTTGTTGGCATTTCTTTCTTCTTTGT-----TCT-TTCTTTTCCTTTTGGGCT
TGTTGTGCTTCTCGCCCGAGCATTGC-TATGTGATCGATGTTGG-TGCTTTGTAATACAAAGCGGGGGGAAACCCTTTTT
CGGTAA--------------------------------------------------------------------------
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>chr2D_13
-------------TCCTCTTGGTCTCGTGGTGGTGATCTCAGTGAGGCGGCGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TT--GGTGGGCGGTGAGGTGGCTGGTTGGCTCCGGCCTGGTTGGGCGGTGGGGTT-GGAATTCGGGAGAAATCCCTTGCC
GG--CTTTTCCGGCTCCGATGCGGTGACACCCGCGGGTGCCACCATTCCTTCCTGGAGGGTGTCGGAGGTATCCAT-CCC
CACTCCCTTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTTGGCGT-CGCATCCCTTCTTGGAG
GTGCTGCTTGGTACGCGGCAGATCGGAGCCTTGGTA------TGTGGTGGGTCGAGTCCAGAGAAAGCAGCGGTGGCGGG
TC-TCCGCGCTT--TG-TCAAGCTGCCGTTGTTGGCATTTCTTTCTTCTTTGT-----TCT-TTCTTTTC--CTTTGGCT
TGTTGTGCTTCTCGCCCGAGCATTGC-TTTGTGATCGATGTTGG-TGCTTTGTAATACAAAGCGGGGGAAACCCTTTTTC
GGTAA---------------------------------------------------------------------------
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>chr5A_13
-------------TCCTCTTGGCCTCGTGGTGGTGATCTCGGTGAGACGGCGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TGCTGGTGGGCGGCGAGGTGGCTGGTTGGCTCCGGTCTGGTTGGGCGGTGGGGTTTGGAGTGCGGGAGAAATCCCTTGCC
GGCTCTCTTCCGGCTCCGATGCGGTGACACCTGCGGTTGCCACCATCCCTTCTTGGAGGGTGTCGGATGTATCCATCCCC
CACTTCCTTTCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAATGTCGTCGACGT-CGCATCCCTTGTTGGAG
GTGCTGCTTGGTACGTGGCGGGTTGGAGCCTGGGTC------TGTGGTGGGTCAATTTCGGAGGGCGCAGCGGCGGCGGG
TCATCCGCGCTT--TG-TCGAGCTGCCGTTGTTGGCATTTCTTTCTTCTTCTTTGTTCTTTGTTCTTTTC--TTTGGGCT
TGTTGTGCTTCTCGCCCGAGCATTCC-TATGT-ATCGGTGTTGGTTGCTTTGGAATACAAAGCGGGGGGAAACCCTTTTT
CGGTAA--------------------------------------------------------------------------
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>chr1B_13
-------------TCCTCTTGGCCTCATGGTGGTGACCTCGGTGAAGCGGCGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TGCTGGTGGGCGGCGAGGTGGCTGGTTGGCTCCGGCCTGGTTGGGCGGTGGGGTTTGGAGTGCAGGAGAAATCCCTTGCC
GGCTCTTTTCCGGCTCCGATGCGGTGACACCTGCGGTTGCCATCATCCCTTCTTGGAGGGTGTCGGATGTATCCATCCCC
AACTTCCTTCCACGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTCGACGT-CGCATCCCTTGCTGGAG
GTGCTGCTTGGTACGCGGCGGGTCGGAAC------CTGGGTCTGTGGTGGGTCAATTTCGGAGGGCGCAGCGGTGGCGGG
TCATCCGCACTT--TG-TCGAGCTGCCGTTGTTGGCATTTCTTTCTTCTTCTTTGTTCTTT-CTTTTTCC--TTTGAGCT
TGTTGTGCTTCTCGCTCGAGCATTCC-TTTGT-ATCGGTGTTGG-TGCTTTGTAATACAAAGCGGGGGGAAACCCTTTTT
CGGTAAAGGC----------------------------------------------------------------------
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>chr1B_13
-------------TCCTCTTGGCCTCGTGGTGGTGATCTCGGTGAGGCGGCGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TGCTGGTGGGCGGCGAGGTGGCTGGTTGGTTCCGGCCTGGTTGGGCGGTGGGGTTTGGAGTGCGGGAGAAATCCCTTGCC
GCCTCTCTTCCGGCTCCGATGCGGTGACACCTGAGGTTGCCACCATCCCTTCTTGGAGGGTGTCGGATGTATCCATCCCC
CACTTCCTTTCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTCGACGT-CGCATCCCTTGCTGGAG
GTGCTGTTTGGTACGCGGCGGGTCGGATC------CTGGGTCTGTGGTGGGTCAATTTCGGAGGGCGCAGCAGTGGCGGG
TCATCCGCGCTTTGT---CGCGCTGCCGTTGTTGGCATTTCTTCCTTCTTCTTTGTTCTTT-CTCTTTCC--TTTGGGCT
TGTTGTGCTTCTCGCCCGAGCATTCC-TTTGT-ATCGGTGTTGG-TGCTTTGTAATACAAAGCGGGGGGAAACCCTTTTT
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>chrUn_13
-------------TCCTCTTGGCCTCGTGGTGGTGATCTCGGTGAGGCGGCGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TGCTGGTGGGCGGCGAGGTGGCTGGTTGGTTCCGGCCTGGTTGGGCGGTGGGGTTTGGAGTGCGGGAGAAATCCCTTGCC
GGCTCTCTTCCGGCTCCGATGCGGTGACACCTGAGGTTGCCCCCATCCCTTCTTGGAGGGTGTCGGATGTATCCATCCCC
CACTTCCTTTCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTCGACGT-CGCATCCCTTGCTGGAG
GTGCTGCTTGGTATGCGACGGGTCGGATCCTGGGTC------TGTGGTGGGTCAATTTCGGAGGGCGCAGCGGTGGCGGG
TCATCCGCGCTT--T---CGCGCTGCCGTTGTTGGCATTTCTTTCTTCTTCTTTGTTCTTT-CTCCTTCC--TTTGGGCT
TGTTGTGCTTCTCGCCCGAGCATTCC-TTTGT-ATCGGTGTTGG-TGCTTTGTAATACAAAGCGGGGGAAACCCTTTTTC
GGTAA---------------------------------------------------------------------------
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>chr6B_13
-------------TCCTCTTGGCCTCGTGGTGGTGATCTCGGTGAGGCGGCGTGGGTGGCGTCAAGACCGCGGTGGCGCA
TGCTGGTGGGCGGCGAGGTGGCTGGTTGGTTCCGGCCTGGTTGGGCGGTGGGGTTTGGAGTGCGGGAGAAATCCCTTGTC
GGCTCTCTTCCGGCTCCGATGCGGTGACACCTGAGGTTGCCACCATCCCTTCTTGGAGGGTGTCGGATGTATCCATCCCC
CACTTCCTTTCGCGTGTCGGGGGAAACCCTAGGACACGTCTGGGCAGCAGCGTCGTCGACGT-CGCATCCCTTACTGGAG
GTGCTGCTTGGTGCGCGGCGGGTCGGATCCTGGGTC------TGTGGTGGGTCAATTTCGGAGGGCGCAGCGGTGGCGGG
TCATCCGCGCTT--T---CGCGCTGCCGTTGTTGGCATTTCTTTCTTCTTCTTTGTTCTTT-CTCCTTCC--TTTGGGCT
TGTTGTGCTTCTCGTCCGAGCATTCC-TTTGT-ATCGGTGTTGG-TGCTTTGTAATACAAAGCGGGGGAAACCCTTTTTC
GGTAA---------------------------------------------------------------------------
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>chr3D_20
--------------------GGTCTCGTGGTGGTGATCTCAGTGAGGCGGCGTGGGTGGCGTCAAGACTGCGGTGGCGCA
TGCTGGTGGGCAGCGAGGTGGCTGGTTGGCTCCGGCCTGGTTGGGCGGTGGGGTTTGGAGTTCGGGAGAAATCCCTTGCC
GGCT--TTTCCGGCTCCAATGCGGTGACACCTGCGGGTGCCACCATTCCTTCCTGGAGGGTGTCGGAGGTATCCATCCCC
CACTCCCTTCCGCGTGCCGGGGGAAACCCTAGGACACGTCCGGGCAGCAGCGTCGTTGGCGT-CGCATCCCTTCTTGGAG
GTGCTGCTTGGTACGCGGCGGATCGGAGCTTTGGTA------TGTGGTGGGTCGAGTCCGGAGGGCGCAGCGGTGGCGGG
TCATCCGCGCTT--TG-TCGAGCTGCCGTTGTTGGCATTTCTTTCTTCTTTCT-----TTT-TTTTTTCT--TTTGGGCT
TGTTGTGCTTCTCGCCCGAGC-TTGC-TATGTGATCGGCGTTGGTTGCTTTGTAATACAAAGCGGGG-AAACCCTTTTTC
GGTAA---------------------------------------------------------------------------
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>chr3D_524
TCCTTAAAGATGAAG-----------------------------------------------------------------
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-------------------------TCATTTCTGCAGATCCAAATGCTCCAGGAGACAGGCATGAGCAAGAGCAACTCCA
TGGTCAACCCTCGTACACGATACATGCAAGTCAAACCGATCCAACGATGGCACACAACGTCACCACAATGAGGTCCAAAT
AA----CTAGCACAAGTGGAAAACGTGAAGACCAACGACTTCTTCCACAGCCGCAGCTCCTTCCCGGCAAAGCAGCACAG
CCAATCAGAGACGAAGATGCCCACCAAACCCACACCACTTCACCACTTGCGTACACGACCAGGTAAAAATAATCACAGCT
CCCAACCGCACGAGCCAAACCCACAGGCCACAGCTCTATATAAACCCAGACTGGAAGAGTAAGGCAGACACTACCGCCGA
TAGCACAAACGAGCTGATACCTCACGAGTCACACACACACACACACACCCTG------------ACACCCCTCGTTTGTT
GACATATCGCCGCCGGTGGCCATGGAGGGGACCTTCATCACGACGGAGCTCCGCGGCGCGCTGGCCAAGGTGGCCGTGTT
CCTGCTCGTCCAGGGTCTGGTGTACCTGATCCTCACCAACTCGTCTGACGTCTTCTCCAAAGATAAGAAGCTCGTCTGAC
GTCTTCTCCAAAGATAAGAAGCTCAGGTCCCTGAGCTTCCGGTCCATGCGGTCCATGAGCGTGAGGCGCGTGCTGGCGCC
GTTCTCCGACGTGCCCGTCGGCACCGACGAACCCTCCTCGCCTTCGCTGCTGTCGTCGTGGTAGTCGCGCCGCTCTGCTA
ACCGCGAGGATTGAATTGCTTGGAG----AGCGGTTGCTTAGTTCTGAACGTATGGACAGTTCCTCTGTTCTGAGTTGTC
ATGGATTCTTA---------------------------------------------------------------------
------------------------------------------------------------------------TTGCGGTT
GAGATTTGAGAATCATATTTGAACTCCCATAAAGTGAGATTAGCTAGGTGGGATCTGTATCTGTAGATATGTACATTGAA
TTGAATTTGGTGGATGGATTATTTGATTCTAAA-AAAAGTGTCTGCTCTCAGTT--------------------------
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>chr3B_538
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-------------------------TCATTTCTGCAGATCCAAATGCTCCAGGAGACC------AGCATGAGCAACTCCA
TGGTCAACCCTCGTACACGGTACATGCAAGTCAAAACGATCCAACGATGGCACACAACGACACCACATCGAGGTCCAAAT
TAACTAGTAGCACAAGTGGAAAGCGCGAAGACCAACGACTTCTTCCACAGCCGCAGCTCCTTCGCGGCAAAGCAACACAG
CCAATCAGAGCCGAAGATGCCCACCAAACCCACAGCACTTCACCACTTGCCTACACGACCAGGTAAAAATAATCTCAGCT
CGCAACCGCACGAGCCAAACCCACAG-------CTCTTTATAAACCCAGACTGCAAGAGTAAGGTAGACAC---------
---------------------------CACACACACACACACACACACA---------------ACACCCCTCGTTTGTT
GACATCTCGCCGCCGGTGGCCATGGAGGGGTCCTTCATCACGACGGAGCTCGGCGACACGCTGGCCAAGGTGGCCGTGTT
CCTGCTCGTCCAGGGTCTCGTGTTCCTGATCCTCAGCAACTCGTCGG-------------------------------AC
GTCTTCTCCAAAGATAAGAAGCTCAGGTCGCTGAGCTTCCGGTCGATGCGGTCCATGAGCGTGAGGCGCGTGCTCGCGCC
TC-CTCCGATGTGCCCGTCGGCACCGACGAACCCTCCTCGCCTTCGCTGCTGTCGTCGTGGTAGTCGCGCCGCTCTGCTA
ACAGCGAGGATTGAATTGCTTGGAGAGTTAGCGGTTGCTTAGTTCTGAACGTATGGACAGTTCCCCTGTTCTGAGTTGTC
GTGGATTCTTAGGCTCTGTTCGGAGTCACTACAACTCCTAAAAATACGATGAGCTGCGGAGCTTCCCTTTCCCAACTCCA
TGCTTTTTTAACTCCAGCTCTGGGAGTGGAGTGATGGAGTGGAGGGTCTCCGAACAGGTTCTTATTGTGGATTTGTGGTT
GAGATCTGAGAATCATATTTGAACTCCCATTATGTTAGAT----TAGGTGGGATCTGTATATGTAGATATGTACATTGAA
TTGAATTTGGTGGATGGATTATTTGATTCTAAA-AAAAGTGTCTGCTCTCAGTTGTGATTATGGTTCTTGAGTTTTTGTT
TCGTTTGTAGTAAACTTCAGTTCCCGGTTAATACACCA---GCCAATACAACACCGAGAGCAACTTTAATGGGAGGACCC
TTGTCCGTTTGAGTCATCCGGACAGAAAATGTCGCCCAACGGGGTGATCCAAATGGACGTCCGTGCCCGCCTGCTGTTCG
TCTCCGACCCAAACCTGACCCAAATCTGGAAACAAATGGGTACGAAGCGGACGAAAGCAGACGCTCTCGTCCACCGCTGT
CGCCCGCTTGTGTCCGCCCCGGGTCCCATATGTCAGCGACTGCATTTTTTGCCTCCACAACACCATTGCGATTTCTGCCC
CCACAACGCCCGCTCGGCCGCTCCTCGGCGACGTGCGCTTGGCCGCTCCTCGACGACGTGTGCTCGGCCGCTCCTCCGCG
CTGGAGCGAGGCCACCGGCGCAAGTCTCCTCCGCGCGCTCGGCCGCTCCTCCGCGCCGCAGCGAGGCCGCCGGCGTAGGG
CTCCTCCGCGCGCTCCTGCTGGGGCTCGAGGCCCGGACGACGGCACGAGCAGAGGGTGGTTGCAGCAGAAGGCGCGAGCA
GAGGCGCAAGGAGGAGAGGAGGGGCGGCGCGAGGGAGAGAGAAGGGGCGGCGTGAGGGAGATAGAACGGGCACCGCGACG
AGGAGGGGACGGGCGGCACGAGGGAGAGAGGAGGGAGCGGGCGGCGCGAGGAAGAGAGAAAGGAACAGACAGTTTGGGTC
TGCTTTTGTGCCGCGCATTGGATAGAACGCTTGTCCGCCCCATGTCCGCTAGGCAGACAGGTGACCCAAACGGACACGAA
ACGGACAAAACCCGTGTCCGTTTGGGTCTTTGCGATGGAGTTGCTCTGAGGTATTTAGGTAATTCTTACACTACCATTCC
GCATGAATGATGAGCTATCTCAATCTAAAAAGAAAGTAATTCTTACACTAGACCAGCAATATTAGTCTGTTCTGCTGTAT
TACGTT-TTTTTCACTCGTGCACTTACCAATGGGACCCACCGGCCAGGAATCTTGTCAAGAGAGCCAAACAATGGTTTAG
AGCTACACGCAAAACCCGTAAACTATGTGTTCTGCGCAAAATTGACCTCGATAA-------TTAATCATTTTGTGATATC
CTCATTTTAATGACATGACAAAATAAAACCCAACCCTAGA-AAATGAGACAAAAAAACTATGTTTGACTCAAATGACGAA
ATAGGTCATCACATTCCATAACATAGACTTTTGTTTTAGAAAAGGAGGACGACCCCCGGCCTCTGCATCTGGACGATGCA
TACGGCCATTTTATTAATTATTAACACAAGACCTTACAGATTCATACATCAGTATGACTAAAGCCACCAACTAAGCAACA
TTTGTCGCTATCCCTATCCAGTTGATGTTGGGGTGCAGAAAGTCTGGGCATAATACCAAACAGAACTCACAGCCAAACCT
AACATCCAAGACTTGAGGTCCCAACCAGGACGCCTGCCGGGTATGGGCACCCACCAGTCCGGCGTGCTCCTCAACCAGGA
CGCCTGCCGGGTATGAGGCCGCCGCAGCCACGTGCCACCAATCCATCTTCAGAGTTGTACTGCTGCATCAACCTTGTCCG
GTCTAGCTGCCGCCGACGCCACCATGACGCCAGGCAGCGTCACCCTCCTGCGCGAGTCCATCTTCGTCCATCAGGCGTCG
AGTCTCCACTGCCCCACGCCGTCGAGATCCGCCGTAAACAAGGACCTATGGCATAATCATATATTGGATCTCAAATTTCA
ATGTTAAAAACAAGTATCATGAAATCGCGTATATTCATTTAAAAAAGCGTAAACAAGCACACATCTCCTGAGCCGCTCGC
TAGCTAC-------------------------------------------------------------------------
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>chr3D_1591
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-------------------------------------------------------------ATTCTTACACTGCCATTCC
GCATGAATGATGAGCTATCTCAATCTAAAAAAAGAGTAATTCTTACACTAGACCAGCAATATTAGTCTGTTCTGCTGTAT
TACGTT-TTTTTCACTCGCGCACTTACCAGTGGGACCCACCGGCCAGGAATCTTGTTAACAGAGCAAAACAATGGTTTAG
TGCTACACGCAAAACCCGTAAAGTATGTGTTCTGCGCAAAATTGACCTCAATAA-------TTGATCATTTTGTTATATC
CTCATTTTAATGACACGACAAAGTAAAACCCTATCCTAGA-AAATGAGACAAAAAA-CTATGTTTGACTCAAATGAGGAA
ATAGGTCATCACATTCCATAACATGGACCAG-------------------------------------------------
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------------------------------------------------TGGC---ATAATATATTGGATCTCAAATTTCA
ATGTTAATACCAGGTATCATGAAATCGTGTATATTCATTTAAAAAAGCGTAAACAAGCACGCACCTCTTGAGCCGCTCGC
TAGCTACTCGTGGGGTGACTAAGAAATTTGTTGTAAATCTTCATATGATACTTCTAAGGGCGGGATGGCTGTTTTGGTTC
TGGGACCATGTGCTCCCTGATGAACAGTAAATTCAAAATAAACAGAAAATAAAACTTTAGATTCTAATTTTTTTTCGTAG
ATGTTCATATTAGTGTACCAAGCATGCTTGATAATTTTCATGCGAAACGGGATAGCAATGCTTCGTCAGTGAAAAAAATT
TAAGTGCAACATTTGGAGGTAACATTTGGCGTTCGACTTGTCTTT
>SNPs
-----------------S-S--------------S-------------S-------------------------------
---------------S-------S------------------------------S------------------S-----S
----S----S----------------S-----------------S------S---S------------------S-----
-----------------------------------------S-S---------------S----S---------------
S--S--------------------S-----------------------------------S-------------------
------S----------------------------S------------------------------S-------------
-----------------S------SSS----------------S--------SS---------SS--S------------
------SS-SSSSSSSSSSSSSSSS-----------S------------------S------------------------
------------------S-------------------------------------------------------------
-----S------------------------------------------S---S---------------------------
--------------------------------------------------------S--------------------S--
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-------------------S----------------S---S-S-S---S-SSSSSSSSSSSSSS----------------
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----------------------------------------------S---------------------------------
-------------------S------------------------------------------------------------
------------S-----------------------------------------------------------------S-
----------S----------------S---------------------------------------------S------
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-------------------------------------------------------------------------S------
--------------------------S---------------------------------S---S---------------
---------------------------------S--------------------------------------------S-
--S--------------S-S------------------SSS---------------------------------------
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-------------------------------------------------------S------------------------
S-------------------------------------------------------------------------------
------S--------------------------------------------------------------S----------
-------S------S-------------S--S---S---------------S--SSSSSSS----S--------------
----------------------------------------S--------------SS-----------------------
-----------S--------------------------------------------------------------------
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--------------S--------------S----------------------------------S---------------
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--------------------------------------S---------------S----S-----S---------S----
-----S--S--------SS---S--------S----------------------S--------S-S------------S-
-----------------------------S---S-----------
>forward_498
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------------------------------------------------------------------------------CT
TGATGTGCTGCTCGCCTA--------------------------------------------------------------
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>reverse_1359
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------------------------------------------------------------------------------CA
ACCGCGAGGACTGAATTG--------------------------------------------------------------
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---------------------------------------------
