>input_sequence_85920
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-----------------------------------------------------------------------------ATG
GCAAAGTGCCTCGCCGTCGCCCTCCTGCTGCTGCTGGTGCTCGCGTACTGCGACGGGAGGGAGCTAAACCAGAAGGACCA
GGCACTCGCAACGGCACGCGGTGCCGGGGCCGCCGGTGGTGGCGTCGGCGAGGAGAAGATTTTGGGGTTGCCTGACCTGC
CGCCTGTGGGAACCGTTACCGGTACCAGCACCACTAACGGCCCGCTGGTGGCGCTTCCTGCCCTTCCCGGGATCCCTGCT
CA---CCCATGA--------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G482800
CAACCAACAGGACAGCGTCACGGGGGCGCATAGCAGGTGTCCGACGAAATGCATGAGTCAAAAGTAAGTTTTACTTCCTT
ATATACAGGGGATTGGCTAGGTCTGGCTAAAACTTAGCGGAGAAAATTCTTCACTAAGGTTTTACTTCACCGGATACTGC
ATTATTTATTGGGGATATGTTTGAAATACCCTTTTGGCGTAAATATTAATTACGTTGCCTTGGCTGTGGATCGCACCGCA
CTTATCAGCAGCTGTGCAGTTATCTTAAATGGAATGCAGCGGCATTCGAGAGTACCTGTCAGAGATGGCTAAAGACGGGA
ACGAAGCGTACCTGTCAGTCAAAGCTTATCTACAACAAGGCAGCAACGTTCCACTTGCAGGTCACAAAGATCCTATACCA
GCGCCGCAAATTTGCAGGAAAAACCAGCAAGGCCCGCAGCGCCCCATCTAGGATCAGGTACAGTTCCAGGAGCCCCCGAC
CCTGATCGGGAAAAGATCTACCTGAAGAAACGAAACCAATCTTGACTCCAAACTTTGCTACATTCATAAATTCAGGGGGG
TGACTAGTTGAGGAAGGATCTGCTGATTGGGAAAAGATCTGCTGATGAAACGAAACCAATAATGGGCTCTAATTC-----
TAATTCGACAGCGGCGCCTTGACCAGCTGGCCTTCTCGACGGCGATGGGAACCAGTCGGCACGGATTCACGGACAAT-AT
AGATCCATCCGCCCCATTCCAA--CACCGATCGACGTGCACATGCATTTCCGCCATACCCATACATTCCTCTCTCTCCC-
-----------------------TCGC--------------------ACCT-------------CTACCCATTC----TA
TCCTAATCTCCTGCGCCAACGACGCGCGGCCACCCTCGCC-----AACCC---------GTGCAGCGTGCCTA------T
AAGAAGCAGCGTAGACGATGCTAAGCCCAAGCTCACTCAAACACAGGCACAGCCACCCAACACTATC------ACAA---
---AGCCGCACAAGCTAG---ACAAT-CTCCTCATAAGTGC---------TAGCGGA---GCCTCCCAGCTAGCAATATG
GCAAAGTGCCTCGCCGTCGCCCTCCTGCTGCTGCTGGTGCTCGCGTACTGCGACGGGAGGGAGCTAAACCAGAAGGACCA
GGCACTCGCAACGGCACGCGGTGCCGGGGCCGCCGGTGGTGGCGTCGGCGAGGAGAAGATTTTGGGGTTGCCTGACCTGC
CGCCTGTGGGAACCGTTACCGGTACCAGCACCACTAACGGCCCGCTGGTGGCGCTTCCTGCCCTTCCCGGGATCCCTGCT
CA---CCCATGATCACCTCTAGTTCATGTGCTGGCTTACA-------AGATGAAGCTCACCTCGTGACTTTACACTTCTA
GGCTCTAGCTTAACATCGCCCGGAAGGCCAACACCGGCGTTTCGCTCATGTCCATGTTCCTTCCTTAATGGGCGTCTGTA
TCATCTATCCCCG--TCTGTATTTCTTTTCAGTTCA-TGTTCTAGTATTTTTCGTTTCCTTGATGTGCTACATGTATGAT
GTATCATCAATGTAATAAATACT--------------TCTTTTTTCAATGTGTTCGCCTT--------------------
-----------------------------------------------------------------TTGCATCATCTACGT
ACAACTTCGTCACTCTTAACTAATCACAAACTCCCAAGTCCAGAGCATGTTCACT------AAGTTGATGACAGCCCGCA
CGCTGTGCGAAAAATGTTTTGTAATACACTTAAA-TGCGATTTGATTGTAAGGGACATGGATATTTCAAGTAGCAATATG
AGAATTAAAACTG-AAATACATATGATTTATTGTGTTTGA-TTATTGTAAGTTGTAAATACCTACCATAATAAAATGAAA
ATTCTCAAGCATGCTTGCATGTTGAGATCTTTTTTTTCCTATGCATGGTTGTATGTTGTGGTGAAACTTTTTCTTATGCA
TGCTGCTGCGAAAATAATATGATATAAAGCCCACTGAGAATGCACTAATGCATCTTGCAAGGTAGAGGATTCTCATGCAC
GCATCAGATGGATGCTAATGGATCAAGCTAGCAAATCTAACGGCTACAACAATTTTGATGGTGTCGAAGCACACATGCGG
AGATAACAAGAATACCCCACGCGTTGCTGCGGGAATCGACTGCTATATATTTCAGTGATTTGATTGTATTAAACATGCAT
AGTTGAATAGATAATATATGAATCAAAACAAAACTA--TATTATATTTTATATTTTATTATTGTGAAGTCAAAAAAATAT
TTGAATATGAGCAACACAATGAGACCAC-----TTTTTTCCATGCATGTTGAGTGGACCTTTGATGAGGTGATATATGTG
GTGAGATGAGATGTGTG
>chr2D_577
GATCT---------------------------------------------------------------------------
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-----------------------TGATTGGGAAAAGATCTGCTAATGAAACGAAACCAATAATGGGCTCTAATTC-----
TATTTCGACAGCGGCGCCTTGACCAGCTGGCCTTCTCGACGGCGATGGGGACCAGTCGGCACGGATTCACGGACAAT-AT
AGATCCATCCGCCCCATTCTAATCCACCGATCGACGCGCACATGCATT-CCGCCATACACATGCATTCCTCTCTCTCCC-
-----------------------TTGCCCGTGGCTGTCGGCTGTCGCACCT-------------CTACCCATCC----TA
TCCTAATCTCCTGCGCCAACGACGCACGGCCACCC-CGCC-----GCCCCCGCCACCCCGTGCAGCGCGCCTA------T
AAGAAGCAGCGTAGACGATGCTAAGCCCAAGCTCACTCAAA------CACAGCCACTCAACACTATC------ACAA---
---GGCCGCACAAGCTAGTAGACAAT-CTCCTCAGAAGTAT---------TAGCGGA---GCCTCCCAGCTAGCAATATG
GCGAAGTGCCTCGCCGTCGCGCTCCTCCTACTGGTGGTGCTCGCGTCCTGCGACGGGAGGGAGCTGAACCAGAAGGACCA
GGCACTGGCCGGT------------------GCCGGTGGTGGCGTCGGCGAGTCGAAGGTGTTGGGGTTGCCTGACCTGC
CGCCTGTGGGAACCGTTACCGGTACCAGCACCACTAACGGCCCGCTGGTGGCGCTTCCTGCCCTTCCCGGGATCCCTGCT
CA---CCCATGATCACCTCTAGTTCATGTGCTGGCTTACA-------AGATGAAGCTCACCTCGTGACTTTACACTTCTA
GGCTCTAGCTTAACATCGCCCGGAAGGCAAACACCGGCGTTTCGCTGATGTCCATGTTCCTTCCTTAATGGGCGTCTGTA
TCATCCATCCTCG--TCTGTATTTCTTTTCAGTCCA-TGTTCTAGTATTTTTCG-TTCCTTGATGTGCTACATGTATGAT
GTATCATCAACGTAATAAATACT--------------TCTTTCTTCAATGTGTTCGCCTT--------------------
-----------------------------------------------------------------TTGCATCATCTACGT
ACAACTTAGTCATTCTTAACTAATCACAAACTCCCAAGTCCAGAGCATGTTCACTTACAAGAAGTTGATGACAGCCTGCA
CGCTGTGCGAAAAATGTTTTGTAATACACTTAAAATGCGATTTGATTGTAAGGGACATGGATATTTCAAGTAGCAATATG
AGAATTAAAACTG-AAATACATATGATTTATTGTGTTTGA-TTATTGTAAGTTGTAAATACCTAGCATAATAAAATGAAA
ATTCTCATGCATGCTTGCATGTTGAGATC-TTTTTTTCCTATGCATGGTTGTATGTTG-GGTGAAACTTTTTCTTATGCA
TGCTGCTGCGAAAATAATATGATCTAAAGCCCACTAAGAATGCACTAATGCATGTTGCAAGGTAGAGGTTTCTCATGCAT
GCATCAGATGGATGCTAATGGATCGAGCTAGCAAATCTAACGGCTACAACAATTTTGATGGTGTGGAAGGACACATGCGG
AGATAACAAGAATACACCACGCGTTGCTGCGGGAATCGACTGCTATATATTTCAATGATTTGATTGTATTAAACATGCAT
AGTTGAATAGATAATATATGAATCGAAACAAAACTAAATATTAAATATTATATTTTATTATTGTGAAGTC-AAAAAATAT
TTGAATATAAGCAACACAATGAGACCAC------TTTTTCCATGCATGTTGAGTGGACCTTTGATGAGGTGATTTATGTG
GTGAGATGAGATGTG--
>chr2A_577
GATCT---------------------------------------------------------------------------
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-----------------------TGATTGGGAAAAGATCTGCTAATGAAACGAAACCAATAATGGGCTCTAATTC-----
TATTTCGACAGCGGCGCCTTGACCAGCTGGCCTTCTCGACGGCGATGGGGACCAGTCGGCACGGATTCACGGACAAT-AT
AGATCCATCCGCCCCATTCCAATCCACCGATCGACGCGCACATGCATT-CCGCCATACACATGCATTCCTCTCTCTCCC-
-----------------------TTGCCCGTGCCTGTCGCCTGTCGCACCTCTACCCTCC-------CCCATTC----TA
TCCTAATCTCCTGCGCCAACGACGCACGGCCACCC-CGCC-----ACCCCCGCCACCCCGTGCAACGCGCCTA------T
AAGAAGCAGAGTAGACGATGCTAATCCCAAGTTCACTCAAA------CACAGCCACGCAACACTATC------ACTCAAA
CACAGCCGCACAAGCTAG---ACTTACCTCCTCAGTAGTA----------TACCGGA---GCCTCCCAGCTAGCAATATG
GCAAAGTGCATCGCCGTCGCGCTCCTGCTACTGGTGGCGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGACCA
GGCACTGGCAACGGCACGCGGTGCCGGTGCCGCCGGTGGCGGCGTTGGCGAGGAGAAGATTTTGGGGTTGCCTGACCTGC
CGCCTGTGGGAACCGTTACCGGTACCAGCACCACTAACGGCCCGCTGGTGGCGCTTCCTGCCATTCCCGGGATCCCTGCT
CA---CCCATGATCACCTCTAGTTCATGTTCTGGCTTACA-------AGATGAAGCTCACCTCGTGACTTTAGACTTCAA
GGCTGTAGCTTAACATCGCCCGGAAGGCAAACACCGGCGTTTCGCTGATGTCCATGTTCCTT--TTAATGGGCGTCTGTA
TCAACTATCCTCG--TCTGTAATTCTTTTCGGTCCG-CTTTCCTGTATTTTTCG-ATCCTTGATGTGCTACATGTAT---
----------------AAATGCT--------------ACTTTCTTCGCAGTGTTCGCCTTCTCAGATATACTCACTATCT
ATCTTTTGGTGAGATTTTTGAATTAAGCCCTATAAACCGAAAATGAGGTAGTACATGTCGGCAGGTTGCATCATCTTCGT
ACAACTTCGTCACTCTTAACTAATCACAAACTCCCAAGTCCAGAGCATGTTCACTTACAAGAAGTTGATGTCAGCCCGCA
CGTTGTGCGAAAAATGTTTTGTAATACACTTAAA-TGCGATTTGACTGTAAGGGACATGAATATTTCAAGTAGGAATATG
ATAATTAAAACTGAAAATACATATGATTTATTGTATTTTATTTATTGTAAGTTGTAAATACCTAGCAAAATAGAATGAAA
ATTCTCATGCATGCTGGCATGTCGAGACGTTTTTTTTCCTATGCATGGTTGTATGTTGTCGTGAAACTTTTCCTTATGCA
TACTGCTGTGAAAATAATATGATCTAAAGCCCACTTAGAATGCACTAATGCACGTTGCAAGGTAGAGGATTCTCATGCAT
GCATCAGATGGATGCTAATGGACTGAGCTAGCAAATCTAACAGCTACAACAATTTTGATGGTGTGGAAGCACGCATGCTG
AGATAACAAGAATACCCCACGCGTTGCTGCGGGAATCGACTGCTATATATTTCAACGATTTGATTGTATGAAACATGCAT
AGTTGTATAGATAATATTTGAATTGAAACAAAAC-------TAAATATTATATTTTATTATTGCGAAGTC-AATT--TTT
TTAAATATAAGTGACATAATATAATGAAAAACTTTTTTTCCATGCATGTTGAGTGGACCTTTGATGAGGTGATATATGTG
GTGAGATGAGATGTGTG
>chr2B_584
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-----------------------TGATCGGGAAAATATCTGCTGATGAAAGGAAACCAATAATAGGCTCTCCTAATTCCA
TAATTCGACAGCGGCACCTTGACTAGTTGGCCTTCTCGACGGCGATAGC-TCCAGTCGGCACGGATTCACGGGCAAT-A-
--ATCCATCCGCCTCATTCCAATCCACC----GACG------TGCATT-CCGCTATACCCATACCTCTC---------CC
CTTGCCCGTGACCAGCCCGCCTGTCGC--------------------ACCT-------------CTA-CCATTC----AA
TCTTCCTCTCCTGCGCCAACGACGCACGGCCACCC-CGCC-----ACCCC---------GTCCAGCTCGCCTA------T
AAGAAGCAGCGTAGACGATGCTAAGCCTAAGCTCACTCCAA------CACAGCCACCCAACACTATC------ACAA---
---AGCCGCACAAGCTAG---ACTAT-CTCCTCAGTAGAAC---------TACCGGA---GCCTCCCAGTTAGCAATATG
GCAAAGTGCCTCGCCGTCGCGCTCCTCCTACTGGTGGCGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGATCA
GGCACTAGCAACGGCACGCGGTGCCGGTGCTGGTGGTG---CTGTCGACGAGTCCAAAGCACTAGGGCTGCCAGACCTGC
CGCTTGTCGGAACCGTTACCGGTACCAGCACCATTACCGGCCCGCTGGTGGTGCTTCCT---------GGGATCCCTGCT
CA---CCCATGATCATCTCGTGTTCATGTGC----TTACA-------AGATGAAGCTCACCTTGTGGCTTTAGACTT-TA
GGCTGTAGCTAGCAC-CGTCCGGAGGAAAAATGCCGGTGTTTCCCTCATGTCCATG----CTCCTTAATGGGCGTCTGTA
TCAACCAGCCTGTCATCTGTATTTCTTTGCAGTTCTTTGTTCCAGTAGTTTTCG-TTCCTTGATGTGCCACATGTAT---
----------------CATCAAAGTAATAAATACTACTCCTTTGTCAGTGTGTTCGCCTT--------------------
-----------------------------------------------------------------CTTG-----------
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>chr2A_667
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-------------------------------CTACTCGACGACGATAGG-ACCTGTCGGCACGGATTCACGGGCAATAA-
--ATCCACCCGCCCCATTCCAATCCACG----GACGTGCACATGCATT-CCGCCATACCCATACATTCCTCTCTCTCTCC
CTTGCCCGTG---------CCTGACGC--------------------ACCTGACCTCTAGTCCTCTACCCATTCTACAAA
TCCTCCTCTCCTGCACCGACGAGGCACGGCCACCC-CG----------------------TGCAGCTCGCCTA------T
AAGATGCAACGTACACGA-GCTAAGCCTAAGCTCACTCAAA------CACAGCCACACAACACTATCACTCAAACAA---
---AGCCGCACAAGTTAG---ACTAT-CTCCTTGCCAG------TACTATTACAAGA---GCCTCCCAGTTAACA--ATG
ACAAAGTGCCTCGCCGTCGCGCTTCTGCTACTGGTGGCGCTCGCGTACTGTGACGGCAGGGAGCTGAACCAGAAGGATCA
GGCACTAGCAACGCCACGCGGTGCCGGTGCCGGTGGTG---CCGTCGACGAGTCGAAGGTGCTGGGGCTGCCAGACCTGC
CGGTCGTCGGAACCGTTACCGGTACCAGCACCATTACCGGCCCGCTGGTGGTGCTTCCA---------GGGATCCCTGCT
CA---CCCATGATCATCTCGAGTTCATGTGC----TTACA-------AGATGAAGCTGTCCTTGTGGCTTCAGACTT-TA
GGCTCTAGCTAGCAC-CGTCCGGAGGAAAAACGCTGGCGTTTCGCTCATGCCCATG----CTCCTTAATGGGCGTCTGTA
TCAACCATCCTGTCATCTGTATTTCTTTGCAGTTCTTTGTTCCAGTAATTTTCG-TTCCTTGATGTGCCACATGTAT---
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>chr2D_792
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-----------------------TCGC--------------------ACCT-------------CTA-CCATTC----AA
TCCTCCTCTCCTGCGCCAACGACGCACGGCCACCC-CGCCTCACCACCCCCGCCACCCCGTCCAGCTCGCCTATAAGATT
AAGAAGCAGCGTAGACGATGCTAAGCCTAAGCTCACTCCAA------CACAGCCACCCAACACTATC------ACAA---
---AGCCGCACAAGCTAG---ACTAT-CTCCTCAGTAGTA----------T-------------------TAGCAACATG
GCAAAGTGCCTCGCCGTCGCGCTCCTCGTACTGGTGGCGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGACCA
GGCACTGGCAACGGCACGCGGTGCCGGTGCCGGTGGTG---CCGTCGACGAGTCCAAGGTGCTGGGGCTGCCAGACCTGC
CGGTCCTGGGAACCTTTACCGGTACCAGCACCATTACCGGCCCGCTGGTGGTGCTTCCA---------GGGATCCCTGCT
CA---CCCATGATCATCTCGAGTTCATGTGC----TTACA-------AGATGAAGCTGTCCTTGTGGCTTTAGACTT-TA
GGCTCTAGCTAACAC-CGTCCGGAGGAAAAACGCTGGCGTTTCACTCGTGCCCATG----CTCCTTAATGGGCGTCTGTA
TCAACCATCCTGTCATCTGTATTTCTTTGCAGTTCTCTGTTCCAGTAATTTTCG-TTCCTTGATGTGCCACATGTAT---
----------------AATCAACGTAATAAATACTACTCCTTTGTCAGTGTGTTCGCCT---------------------
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>chr2B_835
GCACGGCCACCCC-------------------------------------------------------------------
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----------------------------GCCACCC-CG----------------------TGCAACTCACCTA------T
AAGAGGCAGAGTACACGATGCTAAGCCCAAGCTCACTCAAA------CACAGCCACACAACACTATC-------------
----------------------------TCCTCTGTAGTAGTACTACTATTACCAGAGCCGCCTCCCAGTTAGCA--ATG
GCAAAGTGTCTCGCCGTCGCGCTCCTGCTGCTGGTGGTGCTCGCGTCATGCGAAGGGAGGGAGCTGAATGAGAAGG----
-----TTGCAGCGACGCGTGGCGCAGGTGCGGGTGGTG---GCGTCGGCGAGTCTAAGGCGTTGGACTTGCCTTT-----
-GCTCGGGGGAACCGGTACGGGAACCAGCACCATTACCGGCCCGCTGGTGGTGCTTCCT---------GGGATCCCTGCT
ATTGGCCCATGATCATCTCTGGCTCATGTGC----TGGCTTACAAGGAGCTAAAGCTCGCCTTGTCGCTTTAGATT----
--CTGTAGGTAGCAC-CGCCGGGAAGGAAAAAGCGGACGTTTTGCTCATTTCCATG----TTCGGTACTGAGCGCCTGTA
TCAACTGTCATCT--GTACTATCTATTTCCAGTTCA-TGTTCTCGTATTTTTCG-TTCCTTGATGTGCTACATGTA----
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>SNPs
S---SSS--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------------------
-------------------------------------------------S------------------------------
------------------------------------------------S-------------------------------
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-------------------------S---------S----------S--------------------S------------
-----------------------------------------SSSSSS---------------------------------
----------------------------------S----S----------------------------------------
--------------------S------------S-------------------------------S--------------
------S--------------------S----------------------------------------------------
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----------------------------S---------------------------------------------------
----------S-------------------------------------------S-------------------------
----------S---------------------------------------------------------------------
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----------------------------------------------------------------S---------------
-------S------------------------------------------------------------------------
-----------------------S-----------S-----------------S-------------------------S
------------------------S---------------------------------------S---------------
------------------------------------------------------S-------------------------
------------------------S------------------S--S-----------------------S---------
--------S-----------------------------------------------------------------------
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>forward_434
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--------------CAGGAAAAACCAGCAAGGCC----------------------------------------------
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>reverse_2409
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--------GAGCAACACAATGAGACCACT---------------------------------------------------
-----------------
