>input_sequence_85917
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-------------------------------------------------------------------------------A
TGGCGCCGACGTACCGGCCTTACGCGGCGGAGTACGGGGCGGTGGAGCGGAAGGTGCCGGGGGCGCGGTGGGTGGCGTCG
GCGGCGGCGGCGTCGTCGGTGGCGTGGTTCGCGGGGGACCAGGCGGAGATGAAGCGGCGGGGGCGGGTGGCCAGCTACAA
GGCCTACGCCGTGGAGGGCAAGGTGAAGGCGTCCCTCCGCCGGGGCCTCCGCTGGATCAAGGCCAAGTGCTCCCACATCG
TCCACCGCTAG---------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G108900
TTCTTTCAGTTTTCTTTTTCTTTTCTGCGGGAACTTTCATTTTTCTTTTCTTTTTTACGGGAACTTTCAGTAGTTTACTA
GCAATATCTTACCCAGTTGCAATCAGA-GGGATTTGCATCTGGCATCATAAAGGGTTTGCGACTGGCATCCCAATTCCCA
AGCCCGTCTGCATCAGGAAGGGATAAAGCAGCAAATCCTAGCACGAAAGAAGAGAATACATATCTCTCTCTCTCTCTCTC
TCTCTCTCTTCTCTTTTTATTACTAGTTAGACAATAAAGCAACACCCTAA-CCCTAGCAGTTCTCTTACGAAGCAAGGCA
AGGCATACATGTGTTCCTTTTCATAGCCGCCAAGCTGAAGGAACGGATATTCATTTCGCAAGCAGCCTTTGTTGTCGTCC
TCAGAGGGGAAAGATGTCTCGGGTCTCGC-GGCTTTCGGCTCCACCACGCACCGCATCGTGGTGAGGTTCCAGTCACAGA
GCATGAGCACACGCCATGCCTTGCATCCAGCCTCGTCTCGGTCCCGTTCGTGTCCGACGACGAGGACAAGTTGAACATCG
ATCTGTCAACAGATTAATTAG--------------AGTAAAATATTACTGTATG------TATATATG------------
--------------------------------------------------------------------------------
--------------------------------------------------------TATAAAATTGTTGAAACGGACATA
TTGCTTGTCTCGACGCGACGAAAGGGACACTCGTGCCGAGGACCTTGAGAGGTATACAATGTGACGCGGAAAGGTATACA
ATGCGACTATCTG----CACAGTTGAGTGAGCGCTGCTTCCAAGGCATCAGATTCCTGATCGGACGGTCGTGGAGGCGAC
GCCAAGCGCCATATGAGGCGAGGTCCCGAGCATAGGATGCCGCTTGCCTGCCGCTGGCCGCCAATTCGGTCGCTGCGGCC
TCTTGATATCACGCACAGCAACGGCCCTCTCTCTGCCTCGCGCTGCAGCTAGCTGGCCTTCATTGTC-------------
--------GCGCCCACCTCCCTCTCCCCTCTTCTCT---CCTCCAGCGCGCCACGCACGCTCGCGGAGCAAAGCAAGGGA
TGGCGCCGACGTACCGGCCTTACGCGGCGGAGTACGGGGCGGTGGAGCGGAAGGTGCCGGGGGCGCGGTGGGTGGCGTCG
GCGGCGGCGGCGTCGTCGGTGGCGTGGTTCGCGGGGGACCAGGCGGAGATGAAGCGGCGGGGGCGGGTGGCCAGCTACAA
GGCCTACGCCGTGGAGGGCAAGGTGAAGGCGTCCCTCCGCCGGGGCCTCCGCTGGATCAAGGCCAAGTGCTCCCACATCG
TCCACCGCTAGTCCGCTCCGCCCGCCGTCTTCTTCTTCCT------TGGTATTGGC------CCTGCTCTGTCTCCCATG
GATTCGGACCGCGCTCCCGCTCCACCA---CCTTGCGTGCTGCTCTTTCTCTGCCTTGTAAAACCTGGTCTGT-------
--------TCTCATGGGTGCTGGCTCGCCGGATCCTGCAGGTGGCTCATCAGGCGGACGACCGATCGATGGTGGCGAGAA
CGGATGCGCGAGGGATGCAGCCGAGGGACGGACTCATCGAGCGTTCCTTGCGAGTAGATTAGTCACTAGTGTAAGATCAT
CAT----GCATGGGTCCT--------------------TTCTTCTTCTTTTTCTAGTTTTCCTGTTGTCGAGAGAGAGAG
AGAGGAGGGGGGAGAATGTTTGTTTCCGGG----GTTGCAAGCAACGTTGGCCATCAAT----CATCACACGCGATTCCT
TTCTTTCTGCTTCAGTTTCAGATAGTCTGCTCGTGAGATTCCTTTCTGCTTCAGTTCAGTTTGCTTCTGCAAAA----CA
TACCTGGTTGTTGTGTCCGCTTGATACTCTCAGGCTCAAAAGTGCTTGCAAAACAAATTATCCCCTGCAAGGGAAATGAA
TTGGCG-------------------------------CACGAATGAAAATGAATCGAACAGCACACGCTCCAG-----AA
TCACGGGGCATGAGCAAGCTCGGTGAAACCCTGTGGCACGTGTGGACAACCTGTTGGCCGCCCTGCCACGTCGTCTCCGC
TGGTCCCAGTCAACGCGCCCAACAGGTTGTCCACACGGGCCTGGCTATCAGCCCATTGCCGTCAGAGGCTCAGAACA---
-------TGCCTGCGGACGAGAGGGAAAAAAAATATCTGAGCTACATCCCCTCACAATTT-TTATTAATTAATAACCAGT
ATTAATTGCTTGGTAATTTACAGTGTTTTCAGATCTGATAAAAAATAGGAATAATACTACACAAATAATACATATTGGAG
AAGTGGGGTATCGATCCCCATACCTCACCTCTCGCATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCTTGCTGT
AACG
>chr2A_34
CTTTCAGTT------------------------------TTTTTTAAATCTTTTTTGTGGGAACTTCCAGTTGTTTACTA
GCAATATTTTACCCAGTTGCAATCAGA-GGGGTTTGCATCT-------TAAAGGGATTGCAACTGGCATCCC-------A
AGCCCGTCTGCATCAGGAAGGGATAAAGCAGCAAATCCTGGCACAAAAGAAGAGAATAAATATCTCCCTCTG--------
--------TTCTCTTTTCTG-------TAGACAATAAAGCAACACCGTAACCCCTAGCAGTTCTCTTACGAAGCAAGGCA
T---ATACATGTGTTCCTTCTCATAGCCGCCAAGCTGAAGGAACGGATATGCATTTCGCAAGCAGCCTTTGTTGTCGTCC
CCGGAGGGGAAAGATATCTCCGGTCTCGGGGGCTTTCGGCTCCACCACGCACCGCATCGTGGTGAGGTTCCAGTCACGGA
GCA------CACGCCATGCCTTGCACTCAGACTCATCTCCCTTCCATTCGTGTCCGTCGACGCGGACAAGTTGAACATCG
ATCTGTCAACAAATTAATTACTGTAATACCACTCCAGTAAAATATTACGGTATATTATATTATATATG------------
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--------------------------------------------------------TATAAAATTGGTGAAACGGACACA
TTGCTTGTCTCGACGCGACGAAAGGGACACTCGTGCCGAGGACCTTGAGAGGGTGGC-ATGTGACGCGGAAAGGTATACA
ATGCGACTATCTGGACACACAGTTGAGTGAGCCCTGCTTCCGAGGCATCAGATTCCCGATCGGACGGTCAGCGAGGCGAC
GCCGAGCGCCATATGACCCGAGGCCCCGAGCATAGGATGCCGC-----------TGGCCGCCAACTCGGTCGCTGCGGCC
TCTTGATATCACGCACAGCAGCGGCCCTCTCTCTGCCTCGCGCTGCAGCTAGCTGGCCTTCATTGTCGCGCCCCTGCCCG
CCCTCCAGGCTCCCACCTCCCTCTCCTCTCTCCCCCTGCCCTCCAGCGAAGTAAA-------------------GAGGGA
TGGCGCCGACGTACCGGCCTTACGCGGCGGAGTACGGCGTGGTGGAGCGGAAGGTGCCGGGGGCGCGGTGGGTGGCGTCG
GCGGCGGCGGCGTCGTCGGTGGCGTGGTTCGTGGGGGACCAGGCGGAGATGAAGCGGCGGGGGCGGGTGGCCAGCTACAA
GGCGTACGCCGTGGAGGGCAAGGTGAAGGCGTCCCTCCGCAGGGGCCTCCGCTGGATCAAGGCCAAGTGCTCCCACATCG
TCCACCGCTAGCCCGC-CCGCCGTCT-TCTTCTTCTTCCT------TGGTATTCGTCCTCCTCCTGCTCTGCCTCCCATG
GATTCGGACCGCGCTCCACCACCACCTTGCG-TTGCGTGCTCTTCTTTCTCTGCCTGCCTGCCTCCGATATCTGGTCTGG
TCTCATACTCTCATGGGTTTTGGCTCGCCGGATCTTGCAGGTGGCTTATCAG----------GATCGACGGTGGCAAGAA
GGGATGCGCGAGGGA-----------GATGGCCTCATGGAGCATTCCTTGCGAGTAGATTAGTCAGTAGTGTAAGATCAT
CAT--ATGCATGGGTCTTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTTTTCTAGCTTTTGTGTTGTCGAGA-------
-----------GAGAATGTTTGTTTCCGGGCCGGGTTGCAAGCAAAGTTGGCCATCATCACACGC---------------
------------------------------------GATTCCTTTCTGCTTCACTTCACTTTGCTTCTGCAAAGCAAGCA
TACCTGATTGTTGTGTCCGTTTGATGCTG-----------AGTGCTTGCAAAACAAATTACTCCACAGTTGAATTAAATC
CATCGCGCAATGGCACGAAAGCACGCGCAGGGGAAATCAAGAATGAAAATGGATCGAATAGCACACGCTCCAGTCCAGAA
TCACGGGAC----------------AAACCCTGTGGCACGTGGCGC--------TGGCCGCCCTGCCACGTCGTCTCCGC
TGGTCCCAGCCAAC---------AGGTTGTCCACACGGGCCTGGCTCGTCAGC---------------------------
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----
>chr2D_40
---------------------------------------TTTTTTTTTCCTTTTTTGCGGAGATTTCG-GTTGTTTACTA
GCAACATCTTGCCCAGTTGCAATCAGAGGGGGTTTGCATCT-------TAAAGGGATTGCAACTGGCATCCC-------A
AGCCCGTCTGCATCAGGAAGGGATAAAGCAGCAAATCCTGGCACAAAAGAAGAGAATAAACATCTCCCTCTA--------
--------TTCTCTTTTTA-------TTAGACAATAAAGCAACACCCTAACGCTTAGCAGTTCTCTTACGAAGCAAGGCA
TG-----CATGTGTTCCTTTCCATAGCCGCCAAGCTGAAGGAACGGATATGCATTTCGCAAGCAGCCTTTGTTGTCGTCC
TCAGCGGGGAAAGATGCCTCCGGTCTCCGGGGCTTTCGGCTCCACCACGCACCGCATCGTGGTGAGGTTCCAGTCACGGA
GCATGAGCACACGCCATGCCTTGCACCCAGCCTCGTCTCCGTTCCGTTCGTGTCCGTCGACGAGGACAAGTTGAACATCG
ATCTGTTAACAAATTAATTACTGTACTACTACTCCAGTAAAATATTCATTCCGTTCCTAAATATTTGTTTTTTTTTAAGA
TTTCAAATGAATCGTCACATACGGATGTATATACACATGTTTTAGAATGTAGATTCACTCATTTTGTATCGTATATAGTC
ATTTGTTGAAATTTTCTAGACAGATATTTAGAAACGGAGGGGGAGGGAGAGAGTATTATAAAATTGTTGGAACGGACATA
TGGCTTGTCTCGACGCGACGAAAGGGACACTCGTGCCGAGGACCTTGAGAGGATGGC-ATGTGACGCAGAAAGGTATACA
ATGCGACTATCTGGACACACAGCTGAGTGAGCCCTGCTTCCAAGGCATCAGATTCCCGATCGGACGGTCGTCGAGGCGAC
GCCAAGCGCCATATGAGCCGAGGTCCCGAGCATAGGATGCCGCTTGCCTGCCGCTGGCCGCCAACTCGGTCGCTGCGGCC
TCTTGATATCACGCACAGCAACGGCCTTCTCT--------------------CTGGCCTTCATTGTCGCGCCCCTGCCTG
CCCTCCAGGCTCCCACCTCCCTCTCCTCTCCCCTCT---CCCCTCGCGGA--------------GGAGCAAAGTGAGGGA
TGGCGCCGACGTACCGGCCTTACGCGGCGGAGTACGGGGCGGTGGAGCGGAAGGTGCCGGGGGCGCGGTGGGTGGCGTCG
GCGGCGGCGGCGTCGTCGGTGGCGTGGTTCGTGGGGGACCAGGCGGAGATGAAGCGGCGGGGGAGGGTGGCCAGCTACAA
GGCCTACGCCGTGGAGGGCAAGGTGAAGGCGTCCCTCCGCCGGGGCCTCCGCTGGATCAAGGCCAAGTGCTCCCACATCG
TCCACCGCTAGCCCGC-CCGCCCGCCGTCTTCTTCTTCCTCCTCCTTGGTATTGGC------CCTGCTCTGTCTCCCATG
GATTCGGACCGCGCTCCACCACCACCGTGTCCTTGCGTGCTGCTCTTTCTCTGCCTTGTAAAACCTGGTCTGT-------
--------TCTCATGGGTGCTGGCTCGCCGGATCCTGCAGGTGGCTCATCAGGCGGGCGGCCGACCGATGGTGGCGAGAA
CGGATGCGCGAGGGATGCAGCCGAGGGACGGACTCATCGAACGTTCCTTGCGAGTAGATTAGTCACTAGTGTAAGATCAT
CATGCATGCATGGGTCCTTTTTTC---------------TTCTTTTCTTTTTCTAGTTGTTCTGTTGTCGAGAGAGAGGG
G----------GAGAATGTTTGTTTCCGGG----GCTGCAAGCAACGTTGGCCATCAATCAAGCATCACACGCGGTTCCT
TTCTTTCTGCTTCAGTTTCAGATGATCTGCTCGTGAGATTCCTTTCTGCTTCACTTCAGTTTGCTTCCGCAAAACATACC
TGGTT--TTGTTGTGTCCGCTTGATACTCTCAGGCTCAAAAGTGCTTGCAAAACAAATTATCCCCTGCAAGGGAAATGAG
TTGGCG-------------------------------CACGAATGAAAATGAATCCAACAGCACACGCTCCAG-----AA
TCA-----------------CGGTGAAACCCTGTGGCACGTGGCGC--------TGGCCGCCCTGCCACGTCGTCTCCGC
TGGTCCCAGTCAAC---------GCGCCGTCCACACGGGCCTGGCTATCAGCCCATTGCCGTCAGAGGCTCAGAACCATT
TTTGGCGTCCCTGCGGACGAGACGGGG-AAAAAAATCTGAGCCACATCCCCTCACAATTTCTTATTAATTAATAACCAGT
ATTAATTGCTTGATAATTTACAGTGTTTTCAGATCTGATAGAAAATAGTACAAAAAATAC-------------ATTGGAG
AAGTGGGGTATCGATCCCCATACCTC-----TCGCATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCT------
----
>SNPs
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------S---------S----S--------
-------------------------------S---------SSSSSSS-------S----S-----------SSSSSSS-
---------------------------------------S----S-------------S-------S----SSSSSSSSS
SSSSSSSS-----------SSSSSSS------------------------------------------------------
S-SS----------------------------------------------S-----------------------------
--------------------S-------S------------------------------------------------S--
-------------------------S-------------S--S-------------S-----------------------
-----------S--------S--------------------------------S--------------------------
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----------------------------------------------------SSSS-S----------------------
--------------------------------S-----------------------S--------------S--------
-----------------S----------------------------------------------S---------------
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----------S---------------S----S----------------SSSS-SSSSSSSSSSS---------SS-----
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-------------------------------S------------------------------------------------
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-----------S----S---------------------------------------------------------------
-----------------SS-S-----S-----------------------------------------------------
--------------------------------------------------------S--S--------------------
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----------------------------------------S-------------------S-----------------S-
SSSSSSSSSSS---------------------------------------------------------------S-----
-----------------------SS----------------------------S--------------------------
------S------------------------------------------------------------------------S
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-------S-SSSSSSSSSSS----------------------SS-SSSSSSSSS--------------------------
--------------SSSSSSSSS-----------------------------------------------------S---
--------S-------------S--SSS-----S--------S-------------------------------------
------------S---------------------------S-------S-SS--S-S---SSSSSSSSSSSSS-------
--------------------------SSSSS-------------------------------------------SSSSSS
SSSS
>forward_324
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----------------------------------------------------------------CTTACGAAGCAAGGCA
AGGC----------------------------------------------------------------------------
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>reverse_2175
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--------------CAAGCTCGGTGAAACCCTGT----------------------------------------------
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