>input_sequence_85916
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--------------------------------------------------------------------------ATGGCA
AAGTGTCTCGCCGTCGCGCTCCTGCTGCTGGTGGTGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGACCAGGC
ACTGGCAACGGCACGCGGTGCCGGTGC---------CGCCGGTG------GTGGCGTCGGCGAAGAGAAGGTTTTGGGGT
TGCCAGAGTTGCCGCTTGTGGGAGCCGTTACAGGGACCAGTACCGTTACCGGTCCGGTGGTGGTGGTTCCTGCCCTTCCC
GGGATCCCGGCACACCCATGA-----------------------------------------------------------
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-----------------
>chr2A_1_TraesCS2A01G461200
ACTCAACAATATCAAACAGTTTTTATTCGCGAAAAGAA--ATATCAAACGGTTTCGTTTTCTTTATCTCTCGACCTCTCA
GGTTCTGTGATTCTGTCTCGG-AGTCGGGACTAACTCGGAACTTTGGATTATTTCCAGCATGGAGGCCGACGACA-----
-----TATATAGGCGCTGCTGAACCT-AGGTTTAGCAAACTGTTACT---------------------------------
------------------------------------------------------------------------ACGTACTA
GGGCTTGACCACCT--------------GATCGAGCATCCATTGCAA--GGTTGCTCTGCACGTATGCCACCACGGGAAA
ACGAAGTTATGCTCCATTCCGCTCTCCTAAACTACACGACACCGCAGCTAAAGTAGCACCATATGGATTAAACGAGGTGA
AATAAACTTATAAACAAGGCAGAGACC-----------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------AGAAGAAATCGTGAAACCTTCCACCTTCTTCGGCTGTT
TCGTTGATAGTCCAGGGATCTTCGGCCCGACCCACTATGATGACGCCGATGTGGTTACAACCCCCTGCTGTTAATTGGGT
TTTCACTTTCCTTTACGATG---------------CTAGTTGG-------------------------------------
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------------------------------CTACTCCTAAGTTGCCACGTGACACATGTACTAAGCAGTTCAAAC-----
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---------------------------------TATTACAAAAAAATTGACTGTTCTTAAGTTGTTTTAGCTGTAGGAGG
TCTGAT--------TTTCCTTCTGCACAATAGTACATAA-----------------------------------------
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------------------------------------------------------------------------------CA
CAGAAAGAAAATATGAA---CCATTTATTATTAGTATTAT-TATATGAGGCTGAAGTCTTCAGCCTAT--GCATTATTGT
GATACACACAGCCATACGAACAACTCAAATGGAAGCATGGGTCTTCGACGGGGCACATGTGCCCGACTATACAGTGGTGA
TCGACGGCAGC----TGCCGTCTCCTAACACGTACCTGCGCCGACGACGCACTGCCGTGCCGCCCAGTGCACCTACGTGC
AAGTGCCA--CCAACCAAAACTCGCCTATAAAAGGCAGCGTACACGCGATGCTAAGCCCAAGCTCACTCAAACGAAGCCA
CACAACACC-------------------------ATCTCCTCAGTAGCATTACCAGAGCCTCCCAGTTAGCAATATGGCA
AAGTGTCTCGCCGTCGCGCTCCTGCTGCTGGTGGTGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGACCAGGC
ACTGGCAACGGCACGCGGTGCCGGTGC---------CGCCGGTG------GTGGCGTCGGCGAAGAGAAGGTTTTGGGGT
TGCCAGAGTTGCCGCTTGTGGGAGCCGTTACAGGGACCAGTACCGTTACCGGTCCGGTGGTGGTGGTTCCTGCCCTTCCC
GGGATCCCGGCACACCCATGATCATCTCCACTTCATGTGCTGGCTTACA-GCTGAAGCTGAACTTGTAGTTTTATGACT-
----TCTAGGTAGCACCGTCCGTAAGATAAACGTCGGCCTGACCGGCGTTTCGCTCATTTCCATGTTCCTTAATGAGCGT
CTGTATCAACTATCCTATCATCTGTATTTTCTCCCGCTAGGATCGGAAATCTTATATTTTCTATATCCATATACCGTTGA
ATCCTTGGGGTTCCAGAATCCGCCTATTTTACTAGTCTTCGGAAACGAAAAACCCTGAACCAAGAAGAGTTGGATATGTT
ATGTAGGGTATTTTCTTTCAGTTCATGTTCTAGTATTTTCCGTTTCTCTGTATTTTCTTTCAGTTCATGTTCTAGTATGA
TGTATCGTCAACCTAATAAATACTACTTTGTCATCGTGAGTACCTTCTTGGATACATATCAGCAGCTTGCATCATCG---
TACTACTCCATCACTTGATCACAAGGTCCCAACTCCGGAGTTCTTTTTTTTTTTTTGGATAA--------GGAGAGCTTC
CTCACCGATTTTCATTAGCAGAAACCACAGTATCTTGTTATACAAACTACTAAGGGCAAGCAGAAATACTAGGAAACGAC
AACACATGATCTCAAGGAGCAAAATTGTTAGAATAGTCCGAGGCCACCGTTGATCTAGCGAAGACCAAGCAATCACATAA
GTACGATACCGAGATTTGTTAAT---------------------------------------------------------
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-----------------------------------------GAGGTTCATCAATATGGCTACATTTCCGGAGCG-TGACT
ACGGGCGCTCCTTCCCATGACACCGCTACAATACCGCACCTCCGGTCGCCCGGGTGCCGGCACACGCCGCCGGCTCCCCC
GCGTGCCCGTGCTATTATGTTGGCATAGGTTATATCGTGTGTCTACCTCCGATATATATGAGAGGCCTAGGATACAGGTG
TCCTATTAGGACAGAACTCCTACCCTGTCTATAGACAGTCCAAAACCAAGTCCAACTGTAACCTACCTTGTACAATAATA
TTCGACACAACTCTAAC
>chr2D_9
--------ATATCAAACAGTTTTTATTCGCGAAAAGAA--ATATCAAACAGTTTCGTTTTCTTTATCTCTCGACCTCTCA
GGTTCTGTGATTCTGTCTCGG-AGTCGGGACGAACTCGGAACTTTGGATTATTTCCAGCATGGAGGCCGACGATGTGTAT
TAGTGTACATAGGCGCTGCTGGACCAAAGGTTTAGCAAACTGTTACTCCCTCCGTTCGAAATTATTTGTTCAAAAAATAA
ATGTATCTAAATGTATTTTAGTTGTAGATATATCTATTTTTATGACAAGTAATTTCGAACGGAGGGAGAACTACGTACTA
GGGCTT-ACCACCT--------------GATCGAGCATCCATTGCAATAGGGTGCTCTGCACGTATGCCACTGCGGGAAA
ACGAAGCCATGCTCCATTCCGCTCTCCTAAACTACGCGGCACAGCAGCTAAACCAGCACCATATGGATCAAACGAGGTGC
A--------ATAAACAAGGCAGAGATAAGAATAAATACTTAGATCAAAGGGATAGAAAACTTCCACGACCCCTCCCGTGT
CGCCCTCCCCGCGGGTGACCCGGGAGCGCACCGCCGCCGCCGCCGTCACTGCCTAGGGTTCCCTACCCCGCCGCCACCTT
CCTCGCCGCCACCGACGAGAGCCACGAGGCACATTGTTGCTTTTGGAGAACTTTTTTGTATGCCGGGATGTTGTCTTTGA
TGGCGGTTAGAGTGTTGTTGTTGCTAGTGACTGATCACCGTGGCGGGTTTTTTTTTGTTCAGAGATTGAATCGATCATCA
TCAGAAGATTTTTTTTTCTTTTTTGACCGTGTGTATCCTTGATGTCTTTGGACTTCTTGTTGGTACAGAGACCGAGTGTA
ATTGGTATCTTCATAATATTAATATATTCCCTTTCTCGAAAAAGAAGAATTTGTGAAACCTTCCGCCTTCTTTGGCTGTT
TCTTCGTCAATTGCTCCAAGGAAGTAAATCACTCTGTCTAATTAGTTAAACTCCAAACCAAAATCAACGATTGCGCGTCT
TCTTCTCGCGGTC-GACTGACGAGAAGCAGCAGGACTACTTGG-------------------------------------
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------------------------------CTGCTCCTAGGTTACCACGTG-CACATGTGCTTTTTTCGATAAAAGACTT
TTCATTGAATAGATATATCCAGATGATACAATCGCATCGAAAGAAAGTCTGGTCTTTGCATAGTTAGATGCACACAGCCA
CGTGCACATGTGCTAAGCAATCCAAAT-------------AAAAAGTTGACTGCTCCTAAGTTGTTTTGGCTGCAGGAGA
CACGGAACGCCTGATTTTCTTCTGCAG-----------------------------------------------------
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-------------------------------------------------------------------AATACATATGGCA
CAGAAAGAAATGAT-AA---CCATTTATTATTATTATATAATATATGAGGCTGAAGTCTTCAGCCTATATGCATTATTGC
GATACACACAGCCATACGAACAACTCAAATGGAAGCATGGGTCTGCGACGGGGCACATGTGCCCAACTATACAGTGGTGA
TCGACGGCAGC----TGCCGTCTCCTAACACGTACCTGCGCCGACGACGCACTGCCGTGCCGCGCAGTGCACCTACGTGC
AAGTGCCA--CCAACCAAAACTCGCCTATAAAAGGCAGCGTACACGCGATGCTAAGCCAAAGCTCACTCAAACGCAGCCA
CACAACACC-------------------------ATCTCCTCAGTAC----ATCAGAGCCTCCCAGTTAGCAATATGGCA
AAGTATCTCGCCGTCGCGCTCCTGCTACTGGTGGTGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGACCAGGC
ACTTGCAACGGCACGCGGTGCCGGTGC---------TGCCGGTG------GTGGCGTCCGCGAGGAGAAGGTTTTGGGGT
TGCCGGAGCTGCCGCTTGTGGGAACTGTTACAGGGACCAGTACCGTTACCGGCCCTGTGGTGGTGGTTCCTGCCCTTCCC
GGGATCCCGGCACACCCATGATCATCTCCACTTCATGTGCTGGCTTACAAGCTGAAGCTGAACTTGTAGGTTTATGACT-
----TCTAGGTAGCACCGTCCGTAAGATAAACGCCG----------------GCTCATTTCCATGTTCCTTAATGAGCGT
CTGTATCAACTATCCTATCGTCT---------------------------------------------------------
--------------------------------------------------------------------------------
-------GTATTTTCTTTCAGTTCATGTTCTAGTATTTTCCGTTCCTCTGTATTTTCTTTCAGTTCATGTTCTAGTATGA
TGTATCGTCAACCTAATAAATACTACTTTGTCATCGTGAGTACCTTCTTGGATACATATCAGCAGCTTGCATCATCAATT
TACTACTTCATCACTTGATCACAAGGTCCCGACTCCGGAG---TTTCCTTTTTTTTTGATAA--------AGAAAGCTTC
CGCTCCGATTTTCATTAACAGAAACCACAGTATCTTGTTATACAAACTACTAAGGGCAAGCAGAGATATTAGGAAACGAC
GACACATGATCTGAAGGAGCAAAAT-------------------------------------------------------
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-----------------
>chr2B_9
--------ATATCAAACAGTTTTTATTCACAAAAAGAAAAATATCAAACAGTTTCGTTTTCTTTATCTCTCGACCTCTCA
CGTTCTGCGATTCTGTCTCTGCAGTCGGGACTAACTCGGAACTTTGGATTATTTCCAGCATGGAGGCCGACGACA-----
-----TACATAGGCGCTGCTGGACCT-AGGTTTAGCGAATTGTTACT---------------------------------
------------------------------------------------------------------------ACGTACTG
TACTAGGGGCCTGACTACGTGATCGACAGATCGAGCATCCATTGCAA--GGTTGCTCTGCACATTTGCCACCACGGGAAA
ACGAAGCCATGCTCCATTCCGCTCTCCTAAACTACGCGGCAAAGCAGCTAAACTAGCACCATATGGATTAAACGAGGTGA
A--------ATAAACAAGGCAGAGACC-----------------------------------------------------
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------------------------------------------AGAAGAAATTGTGAAACCTTCCGCCTTCTTCGGCTCTT
TCTTCGTCAATTGCTCCAAGGAGCCAAG------------------TAAACTCCAAACCAAAATCAACGATTGCACGTCT
TCTTCTCGCGGTCTGACTGACAAGAAGCAGCATGACTGCAGCCTGCTTTTTTTTAGAAAACGAGGATGACCCCCGGCCTC
TGCATCTGGACGATGCATACGGCCACTTTATTAATTATTCTTACAAGACCTTACAAAGTAATACAATAATAAGACTAAAG
CCGCCATCTAAGCAACAAACTGTCGCTACACCTATCCAGTTGATGAAGGGGCGTAGATAGCCTGAGCCTAATACCAAACA
GAAATCGCAGCCAAACCTAACATCTAAGACCTGAGGACCCATCCAGAACGCCTGTCGGGCATGAGTCTCACCGGTCCGGC
GTGCACTCAGAGGCCGCTGCCGCCAACTGCCACCGCTCCATCTTGAGAACTGTACTGATGCATCAACCTTGCTCGGTCCA
GCTATCGTCGACGCCACCACGGCGCCCAACGGCACCTCCTCCCTGCGCGTAAACAGCTGAGCACGTCGCGGTCGCCACTG
ATACACCTCAGCACCATGCTGCCAAGTACCACCAGCTGACACAGCTTGAAGTCTTTGAAAGATCTGTCGTGCGTAGCACC
TGCCGCCCAGGCATGACAAGGCATAGCACCTGTCGGTCAGGCATGACTTGACATCTCCACCAAAGCTCCGTGCAAGACGA
AGCCGCTCCACCTCCAGCCTCTCTGAACGGGAGCACCCCAGGAAGACACGGCGAAGAGTTGAGCACCACAATCACCATGA
GAGCCGGACCAACCGACCGCCATGGCGAAGCGACACCATTAAAGAGAGAACCGCCGCCATCAAGGACGCCAAGAACGCGC
TGCAGCTGTCCCACCTCCCCACGGCCAAAGCGGCGCCTTCAAGAAAGTGACGGAGCCGGGCACCGCCGCCGCCCAACCAA
AGTTGTAGGTTTTCACCCGGGTGCAGGGGGAGGACGAGAGGGAGGGAGCTGGATCTCGAAGCCGCCTTCAAGAAGGAAAC
AACGCCTGGAGCGCCACCGGCGTCGTGGCCGCCACAGCCGGCCAAGAAATTACTCTGATCCAGAGCTCCCAACCCCACAT
CCGCGCAGTCAGCCACCGGATCTGGCCGGACTGACGAGGAGGAAGTAGTAGCACGGGGGCGTTGTCTTCAGATCTGGCGA
AGAAGAGTAGTAGGGTATCCCTCCACGCGGCTCCCGCATCCACCGCCAACTCGCCGCCCGCGCGGCCGAGTAGACGCGGC
CCTCAACACCGGCGAGCGCCGCCCGCCACCGCGCACGACGCCGCCCTCACCAGCAGAGGCCGCCGCCTCAAACCCTAGGC
CCGAGCCTGAGCGGCATCGCGGCCGATGGCCTCGCCGCCACCCTCATCGACGGCCGCGCGGGGGACCCGGCGCCCGTCTC
CGACGGCGGCGAGGAAAGGACGAGAAGGGGGAGGCGGACGGGGAGGTTGGTCGCCCCCGAGTCGCCCTACACGAGGGAAC
GGGAGGGAATGGGACGAGTCCGACTGCAGCCTGCTACTAAGTTACCACGTGACACATGTGCTAAGCAATC----------
--------------------------------------------------------------------------------
--------TGTGCTAAGCAATCCAAAGTAGGAGTATTAAAGAAAAGTTGACTACTCCTAAGTTGTTCTGGCTGGTGGCGG
GCTGAT--------TTTCCTTCTGCACACATAGCACATAAGCCACATTAAGCACCTATTCTTCCATCTCTTTCCTCCTCT
AAGAAAAAGCTCTTCTCCTCCCGTCGGCGCCGCCGCCGGTCCACCCCATCTCCGATGGCCTCTAGGCCATGGAGGTGCGA
GAGGATCTCGGCCCCCGGTGGGTGGGAGGGACCCCGTTCTTATTCTTGTTAAATTCGGCGTCTTGATTGGGGTTGTGGCG
GCGGTGATGTCCCTTTGTAGGAATAATGTCTCCCATGTTCTATCCCCGTCCTTCTAGCATCATCGGAGGGCGTGTAGAGG
TTTGTCTCCATCGGATCCACGAAATTCGATCGGTGTTGGACTTTGGTGGATCTGTTTGAATCCGGTCTTCGTTCGTCTTC
GTTTGGGTGTTTACAGGTTTGACCCTTCTAATCTACGAATTTCTTCATTGGTGATGGTTGCTACTCTGGTGCGCTGGTCT
TATTGAGCCTTAGCATGACGACTTCCCGACTGTCTACTACAACAAGGTTTGCCCGGCTCCAGTGAGGGAGGGACGATGAC
GGCGGCGCGCCTTTGGCTCGCTCTGGTGATTGTAGTCGTCGCTAGGTGGTCCACAGGCATGGCTGTAATTTTTATTATCT
CTGTTGTTCTTTGTACTGTCATGATTGAAGATGAATATATTGGAAGTTTCTTGAAAAGAAAATAAAAAATACATAGCACA
TGAAAAAAAATGAT-ACGAGCCATTTTTTATTAG-------------------------------TATATGCATTATTGC
GATACACACAGCCATACGAACAACTCAAATGGAAGCATGGGTCTGGGACGGCACACATGTGCCTGACTATACAGCGGCGA
TCGACGGCAGC----TGCCCTCTCCTAACACGTACCTGCGCCGACGATGCACTGCCGTGCCGGCCAGTGCACCTACGTGC
AAGTGCCA--CCAACCAAAACTCGCCTATAAAAGGCGGCGTACACGCGATGCTAAGCCCAAGCTCACTCAAACGCAGCCA
CACAACTCTGT----------------------------CTCAGTAC----ATTAGAGCCTCCCAGTTAGCAATATGGCA
AAGTGTCTCGCCGCCGCGCTCCTGCTACTGGTGGTGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGACCAGGC
ACTAGCAACGGCACGCGGTGCTGGTGCCGGTGCCGGTGCCGGTG------GTGGCGTCGGCGAGGAGAAGGTTTTGGGGT
TGCCAGAGTTGCCGCTTGTGGGAACCGTTACCGGTACCAGCACAGTTACCGGTCCGGTGGTGGTGGTTCCTGCCCTTCCC
GGGATCCCTGCACACCCATGATCATCTCCACTTCATGTGCTGGCTTACAAGCTGAAGCTGAACTTGTAGGCTTATGACT-
----TCTAGGTAGCACCGTCCGTAAGATAAACGCCGGCCTGACCGGCGTTTCGCTCATTTCCATGTTCCTTAATGAGCGT
CTGTATCAACTACCCTATCGTCT---------------------------------------------------------
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-------GTATTTTCTTTCAGTTCATGTTCTAGT-TTTTCTGTTCCTCTGGATTTTCTTTCAGTTCATGTTCTAGTATGA
TGTATTGTCAACCTAATAAGTACTACTTTGTCATCGTGAGTACCTTCTTGGATACATATCAGGAGCTTGTATCATCGATT
TAGTACTTCATCACTTGATCACAAGGTCCCATCTCTGGAGCT-TTTATTTCTTTTTTGATAA--------AGAGAGCTTC
CTCTCCGATTTTCATCAACAGAAACCATAGTATCTTGTTATATAAACTACTAAGGGCAAGCAGAAATACTAGGAAACGAC
GACACATGATCTGAGGGAGCAAAAT-------------------------------------------------------
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>chr2A_680
TTG-----------------------------------------------------------------------------
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-------------------------------------------TATGAGGCTGAAGTCTTCAGCCTATATGCATTATTGC
GATACACAGAGCCATACGAACAACTCAAATGGAAGCATGGGTCTTTGACGGCACACATGTGCCTGGCTATACCGTGGTGA
TCGACGGCAGC----TGCCGTCTCCTAACACGTACCCGCGCCGACGACGCGCTGCCGTGCCGCCCTGTGCACCTTCGTGC
AAGTGACA--TCAACCAAAACTCGCCTATAAAAGGCAGCGTACACACGATGCTAAGCCTAAGCTGACTCAAACGCAGCCA
CACAACACC-------------------------ATCTCCTCAGTAC----ATCAGAGCCTCCCAGTTAGCAATATGGCA
AAGTATCTCGCCGTCGCGCTCCTGCTACTGGTGGTGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGACCAGGC
ACTCGCAACGGCACGCGGTGCTGGTGCGGG------TGCTGGTG------GTGGCGTCGGCGAGGAGAAGATTTTGGGGT
TGGCAGAGTTGCCGCTTGTGGGAACTGTTACCGGTACCAGCACAGTTACCGGTCCGGTGGTGGTGGTTCCTGCCCTTCCC
GGGATCCCTGCTCACCCATGATCATCACCAGTTCATATGCTGTCTTACAAGATGAAGCTGAACTAGTGGGTTTATGACT-
----TCTAGCTAGCACCGTCCGGAAGATAAACACCGG---------TGTTTCGCTCATTTTCACGTTCCTTCATGAGCGT
CTGTATCAACTATCCTATCGTCT---------------------------------------------------------
--------------------------------------------------------------------------------
-------GTATTTTCTTTCAGTTCATGTTCTAGTATTTTCCGTTCCTCTGTATTTTCTTTCAGTTCATGTTCTAGTATGA
TGTATCGTCAACCTAATAAATACTACTTTGTCATCATGAGTACCTTCTTGGATACATAT-AGCAGCTTGCATCATCGATT
TACTACTTCATCACTTGATCACAACGTCCAAACTCCTGAG---TTTTTTTTTTGTTTTTTGTATAAAGAGAGAGAGCTTC
CTCTCTGATTTTCATTAATAGAAACCACAGTATCTTGTTATACAAACTACTAAGGGCAAGCAGAAATACTAGGAAACGAC
GACACATGATCTGAAGGAGCAAAAT-------------------------------------------------------
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>chr2A_761
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-------------------------------------------TTCAACGGCACACCTGTGCCTGCCTA--CAGTAGCGA
TCGACGGCAGCTGCATGCCCTCTCGTAACACGTACCTGCGCCGACGACGCACTGTCGTGCCGCCCAGTGCACCCACGTGC
AAGTGCCACGCCAACCAAAACTCGCCTATAAAAGGCAGCCTACACACGATGCTAAGCCCAGGCTCACTCAAACACAGCCA
CACAACACC---------------------------CTCCTCACTAC----ACCAGAACCTCCCAGTAGCA---ATGGCA
AAGTGCCTCGCGGTCGCGCTCCTCCTGCTGGTGGCGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGGCCAGGC
ACTTGCAACGGCACGCGGTGCC------------------GGTG------GTGGCATCGGCGAGGAGAAGATTTTGGGGT
TGCCAGAGTTGCCGCTTGTGGGAACCGTTACAGGGACCAGTACCGTTACCGGCCCTGCGGTGGTGCTTCCTGCT------
---ATCCCGGCTCACCCATGATCATCTCCGGTTCATGTGCTGGCTTACAAGATGAAGCTGAACTTGCGGCTTCAGACTTC
TAGCCAGC----ACCCCGTCCGGAAGATAAACACCGGCCTGACCGGCGTTTCGCTCGTTTTCTTGTTCCTTGACGAGCGT
CTGTATCAACTATCCTATCGTCT---------------------------------------------------------
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-------GTA----------------------------------------------------------------------
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>chr2D_900
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----------------------------TAAGAAGCAGCGTAGA--CGATGCTAAGCCTAAGCTCACTCCAACACAGCCA
CCCAACACTATCACAAAGCCGCACAAGCTAGACTATCTCCTCAGTAGTA-----------------TTAGCAACATGGCA
AAGTGCCTCGCCGTCGCGCTCCTCGTACTGGTGGCGCTCGCGTACTGCGACGGGAGGGAGCTGAACCAGAAGGACCAGGC
ACTGGCAACGGCACGCGGTGCC------------------GGTGCCGGTGGTGCCGTCGACGAGTCCAAGGTGCTGGGGC
TGCCAGACCTGCCGGTCCTGGGAACCTTTACCGGTACCAGCACCATTACCGGCCCGCTGGTGGTG---------CTTCCA
GGGATCCCTGCTCACCCATGATCATCTCGAGTTCATGTGCT----TACAAGATGAAGCTGTCCTTGTGGCTTTAGACTTT
AGGCTCTAGCTAACACCGTCCGGAGGAAAAACGCTGG---------CGTTTCACTCGTGCCCATGCTCCTTAATGGGCGT
CTGTATCAACCATCCTGTCATCT---------------------------------------------------------
--------------------------------------------------------------------------------
-------GTATTT-------------------------------------------------------------------
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-----------------
>chr4A_1879
TGTTAT--------------------------------------------------------------------------
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-------------------------------AATAATCCGAGGCCACCGTTGATCTACCGAAGACCAAGCAGTCACATAA
GCACGACACCGAGATTTGTTAACAAGGTTCATCGATATGGCTACATCCCTGGGGCATTGACTACGGGCGCTCCTCCCCAT
GACACCGCTATAATACCGCACCTCCGGCCGCCCGGGTGCCGGCACACGCCGCCGGCTCCCCCGCGTGCCTATGCTATTAT
GTTGGCATAGGTTACATTGTGTGTCTATCCCCGATATATATGAGAGGCCTAGGATACAAGTGTCCTATTAGGACACAACT
TCTACCCTGTCTACACACAGTCCAAAACCAAGTCCAACTGTAACCTACCTTATACAATAATATTTGACACAATTCTAATA
AACTCCACCTTGGCGAATATTCTTCACCACCTCGAATTCATCCATGTGTCGAACCTTCATGTACATTGGACTTGAGATAC
GCCATGGGCACTGCTGCTACTTCCAGACTCCACATGACTCCACCTGCAACTGTAGTTCCTTCTCGCCTTCTTCACAATCA
ACACTCGAGCAAAATTAAGTTCCTCATTACTCTACCTTGTGCGCCCAACTTTCGGAGTATCCGTCCAACGCCATCACACA
CCGACCACTGTCCGCGTGAAAATGAACAATTCACATATTGGACGCCACATATAAGAGTTACCTGAACTCAACGTCACCGC
TCTTTCTTAACAGTCTTTCTGAAACTTGAAGGAATTTCACCGTCGCCCTGTGTCACCCTAAGTCAAATTCACAGTTGTCT
CATCCTTTTCCTGGATAGTCTCTGACACATCCCACAGCTATAGCACTCCACCTCCTTCTGTACTAGTCATCCGCACTTTG
CCATGTGCACTGAACACCACAGAATATACGGCTATATACTCTCTCAGCCTTTGACAATTTCAAACTCTCCGCCACTTTCT
CAGATTCTTCATGGTCAACTCCTGTCCATCTTCCGGCACCGATAGACCCAGTCATCAACTTAAATCTGGTACTCGTCAAC
ACTGCTTTAGCACCCTTTCACACTTTGTCCGACCACATGTCTGACCACCAGTGCCTTGGTCTGTCGCTGTGTCCCATGCT
TACTGCACGCCTCGCCGCTATCACCGCGTCAAGCCTCTGCTGTCCTGGTCGAGTCTCCAGGGTCGCGAACCACACCACTC
AACCCCCACTGCAGAGAACCACCGATCATCACCGACCGATGCCGAGTATCACATCTCCATCAGACCACTGGTACCCAGTC
CGATCCATGTGTCTCTCGCTATCCCGCTGAAATAGGCTTCGACTCTCTGTTAACTTACGCCGTAACCCCTCCATCAGCTC
AGAGCATAGTCATCCATCAGACTCCAGCTCCACCTTCAACATGACTCCATGTAGCTGCGCTATGCTACCCCCGGGCTCCG
TCGATTTCAAACTCTCATGTGTGCACTGCCTTGAATCAACCCTGCGCCATAGTCTTGTCGAAGCCGTACAAGCCCTCAGG
CCTGCACCATGTGTTTCCACGCCCCAGAAGTCGGCCACCATCAGCATCACGCTCCTATGTCGTCGTTGCTGAAATCACCG
CCGTCTTCTGCTTTGACCGACATCCCTGCCGATCCATCAGACTGTCAGTCCGACCCAGTCGAAATTATCCGACTACACCA
TGCTCCATCCTGCGTCGTGTCCGCCTCGCACATCAGTGCATTGCCTTGACGCCATGTGTATGCATGATCTCTGTCACGAC
GCACTCCAGACTTCTTCAAGCCTTATACTCACGTCGTTGTTCTCGGTTTCCGTATGACTGCCTCCGTTGAACAACAACAT
CGCTATCATGATGTCATCCTTGACCAGTGTACAAAGCAAAGAACCCAAACGTAGTCTTCCTGGTAGTCTTCTCGTGTAGG
TGTAGCAGCCAAATTCAACTCCACAACCTAACACCACGTGACCCTCCTGACTAGTTTCTTTTTTCTTTTCTTAATCACAC
TTCAAATCAATCTGATAACAGCTAGCGACTTCCATGTCCAACCACACTGCCATGCGTGGAAACCGATCTTTTCTTCAAAC
AAACTCGTACTTGTAGCTTTTTTTTTTTGAGGCAATCGTACTTGTACACACGACCACCTGCTGCACTCTGCCCTGCACGC
CCTCGCTCCAGCTCCAATTGGGCTCTGCGCCCGCGCACATGGGCCTTAAGCGCCCTGTTGCCTTCCGCTGCTAGACCCCG
CACGCACGTTTGCCTTACGCTTCGTTCCGTATCACGATCGTCCTCGGCGAGACCCAATCGACTAGAACAACGTGCCGCCG
TCTTGAGCCGGAATCTGCACCCGATCCGAATAGGCATTGTAGGTGTGCGTCCCGATCGATCCGATCAGCTCGTAGCTACT
GCCGTCGCTGCCTGCTTCCTTGAAGATTTATATCACCATGAATCCATCTGCTTCTACATCGTGCTTGCATCAACCCATCG
ACGATGCCACGCCGATATCCTTCTACTTCAACGATCGCCCCGCAGAATTTCATAAATACTTTCTTCCTCTCCTCTAGATC
AATTCCTCCGCGACCTCCGAACAACCTAGCTCATGATACCACTTGTTAGAATAATCCGAGGCCACCGTTGATCTACCGAA
GACACAGCAATCACACAAGCACGACACCGAGATTTGTTAACGAGGTTCACCGATATGGCTACATCCCCGGGGCATTGACT
ACGGGCGCTCCTCCCCATGACACCGCTATAATACCGCACCTCCGGCCGCCCGGGTGCCGGCACACGCCGCCGGCTCCCCC
GCGTGCCCGTGCTATTATGTTGGCATAGGTTACATCGTGTGTCTATCCCCGATATATATGAGAGGCTTAGGATACAAGTG
TCCTATTAGGACACAACTCCTACCCTGTCTACACACAGTCCAAAACCAAGTCCAACTGTAACCTACCTTGTACAATAATA
TTTGACACAATTCTAAC
>SNPs
SS-S-SSS-----------------------------------------S------------------------------
--------------------------------------------------------------------------------
-------S-------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------SS---------------------------S--S---S---------S---------------------------
-SSSSSSSS-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S------------S---------------
--S-S-SS-S-SSSSSS-SSSSS-SSSSSSS-SSSSSSS-SSSS-SSS-SS-SSSS--S-SSSS-SS-SS--SSSS-SS-
-S-SSSSSSSS-S-SSSSSS------------------S-----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------S----------S---------------S-------S-SS---S-----
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--------------------------------------S------S-------S--S-----------S----S------
S---------------------------SSSSSSSSSS------------------------------------------
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----------SS--S----------------------SSS---------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-----------------------------------------------S-SS-----------------------------
--------------------------------------------------------------------------------
------------------------------------S--------------------------S----------------
-----------------------S--------------------------------------------------------
---------------------------------------------------------------------S----------
---------------------------------S----------------------------------------------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-------S--------------------------------S-S-------------S-------------S---------
---S-------------S--------------------------------------------------------------
S-----------S------------SSSSSS----S---------------------S-------------S--------
-S----S---------------S---------------------------------------------------------
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-------------------------------------------------S-S------------SS----S--S------
------------S---------------S----------------S----------------------------------
--------------------------------S------------S-S------------------S---------S---
-------------S-----------------S-S----------------------------------------------
--S-------S------
>forward_1039
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-----------------------------------------------------------ACCCCCTGCTGTTAATTGGG-
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>reverse_4323
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--CCTTGGGGTTCCAGAATCCG----------------------------------------------------------
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-----------------
