>input_sequence_85915
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---------------------------------------------------------ATGTCGTCCATGGACTGCGCGAT
CCATGTGGTGCTGGGGGTGGTCATGCGGAGGAGCATCTGCCGGCTGCACGAAGTCGTCGCCATGGCCGTGGAGCTCGGCA
CGGCGCTGCTTGTGGCCGTGCGGTTCTCCGGCATGGCCTTCCGCCGCACGCGAGCCCCGACTCAGGTG------------
---------GTATCGGGGTCGACTCACTATTACTACTACGCCCCCGTGGCGGCCTCCATGGTTGGCATGTCCAGGCTCGA
CAGGCACTAG----------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G360800
AGCTGGAACCGACGATTTCTTTTGCTACCATCGTCGGAGCAAAAAAACGTGACATCGGCGATCCAAGAGAGGTTGTAACG
ACGAGCAGCTGGGTACTGCGACGAGCGGCAACGGTGAGGGAAAGGACGCGGGTGCTTTCGCGTCTCGTCGGAGCACACAC
TCGTGGTGGCTGGGGCAGGGACATGTCACTGGCGGATCTGAACCAAGACGCGTGCGCGGGGTAGAGGGGGAAGAAGATCA
TGACATGGGGGAAGGCGGATCGGACGGCCCCTGCCTGCTGGATCGGGCGGCAGGAGGCCGACCGGCCCAAATTTGGGTTG
GCGCGCCGGCGCGTATCACCGCTCAAACATATTGTTATGAAATATTTGATTTATTTTGAGCAATGTCTCATGTCTAAGTC
TATTGTTCCGTGGCAACGCACGGGCATTCAGCTAATTAATCTAAAGATCGTATCATTTTTGTGTCACTTGACT---ACTT
TTCTAGTTAAATTGTTGGCAAAACATAATTTTCTGTTGCCGTGTACACCTTGCATTTTTAGATGACGGAGTAGCCACAAC
TACAAGTCGTACTACCTAAATGTTCTGGAAAGAAAGAGAGAAATTGAAAACAAAACTTTGTCCTGTTTTCATGCATTCCT
CTCCTTGCCCCAACACGCTTACTGTGTGATTAACTATTTTTTGGACAATGAAGACATTAACTAATTTCATTGTTTAAGGT
TTACAAATAGTAAGTTGGTAAAAATTCATGAATCTACATAACCCGCATCGATCCATCAGACGGCCATCGGCATCACAT--
ACACTAGCTACCAAATCTATATTGGAAG---GTAGATGACAAAAGCAACAGACCTGCCGTCTAAAACACACGCCGCAAGC
TAGCTAGCTAGACCGAACACAC---------AACGCCAGGCTTCCAAAGAAAACTAACTAGCTAGAAAGAAGCTAGGTCG
TCGGCACCGGCGAGGGTCGATCTCACATTTGACGCCGGCCGTCTGGCCGGCCGACCGATGTCGTCCATGGACTGCGCGAT
CCATGTGGTGCTGGGGGTGGTCATGCGGAGGAGCATCTGCCGGCTGCACGAAGTCGTCGCCATGGCCGTGGAGCTCGGCA
CGGCGCTGCTTGTGGCCGTGCGGTTCTCCGGCATGGCCTTCCGCCGCACGCGAGCCCCGACTCAGGTG------------
---------GTATCGGGGTCGACTCACTATTACTACTACGCCCCCGTGGCGGCCTCCATGGTTGGCATGTCCAGGCTCGA
CAGGCACTAGTC------ACCGGTGAGCTACACCCCTCTGGATTTGATGTCTAATCAATCGTGTTTTTTT-ACTTTGTGA
GTAATAATGAAATTCAGTGGTTGATTAGCTACATACACACACGTGCACTGTATGTTAAGCAATATATGTGTTCATCATGA
TATCGACATAGTAATTGATCACTCTCGCATGCATTTGAGAGCAAAATGGTGGTGATTAATTGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATATAAGAGTGTTTAGATCACTAAAATAGTGATCTAAACACTTTTATATTAGTTTACAGAGGGAGTAATTAAGTGTA
AAC-GTA----ACTAAGCCTATAATCCTCTAGTGGTTTATAGAATACATATAGCAGATATGAGATATCAGAAGCAGAATC
GAGAGAGAACAGACAAGAATTAGTTACTCTGAATACAGCAATAGAGTGCATCCTACATAGGTGGATCTTCTTCCTTGCCA
ATGTCCATGTTTTATCGTTCGGGTTGTTATTAATCGCTGGTTATTCATGTGATGTATTATCAATTTGCGGATATTGCTCG
TAGTCCAACGAAGCTGGATTAAGACCGCCCTCAGGCTTGCCCTTGGTGGCGTCATAGCAGCCCATGGTCTGAAACCAGTA
GACTGCTCTCGTGCGCCACCTCTTATATTGCGCCCCCTTAAAAGCAGGCGGCTTCAGATGCGCAGCAAAACCACTCGGAG
TAAATTGCCTATAATCAGGTTTTTGAATTGTTGGAAATATAAGCAAGTTACTACGAGATTTA
>chr3A_435
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----------------------------------ATTAATCCAAAGATCGTATCATTTTTGTGTCACTTGACT---ACTT
TTCTAGTTAAATTGTTGGCAAAACATATTTTTCTGTTGCCGTGTACACCTTGCATTTTTAGATGACGGAGTAGCCACAAC
TACAAGTCGTACTACCTAAATGTTCTGGAAAGAAAGTGAGAAATTGAAAACAAAACTTTGTCCTGTTTTCATGCATTCCT
CTCCTTGCCCCAACACGCTTACTGTGTGATTAACTATTTTTTGGACAATGAAAACATTAACTAATTTCATTGTTTAAGGT
TTACAAATAGTAAGTTGGTAAAAATTCATGAATCTACATAACCCGCATCGATCCATCAGAGGGCCATCGGCATCACAT--
ACACTAGCTACCAAATCTATATTGGAAG---GTAGATGACAAAAGCAACAGACCTGCCGTCTAAAACACACGCCGCAAGC
TAGCTAGATCCATCGAACACAC---------AACGCCAGGCTTCCAAAGAAAACTAACTAGCTAGAAAGAAGCTAGGTCG
TCGGCACCGGCGAGGGTCGATCTCACATTTGACGCCGGCCGTCTGGCCGGCCGACCGATGTCGTCCATGGACTGCACGAT
CCATGTGGTGCTGGGGGTGGTCATGCGGAGGAGCATCTGCCGGCTGCACGAAGTCGTCGCCATGGCCGTGGAGCTCGGCA
CGGCGCTGCTTGTGGCCGTGCGGTTCTCCGGCATGGCCTTCCGCCGCACGCGAGCCCCGACTCAGGTG------------
---------GTATCGGGGTCGACTCACTATTACTACTACGCCCCCGTGGCGGCCTCCATGGTTGGCATGTCCAGGCTCGA
CAGGCACTAGTC------ACCGGTGAGCTACACCCCTCTGGATTTGATGTCTAATCAATCGTGTTTTT-----TTTGTGA
GTAATAATGAAATTCAGTGCTTGATTAGCTACA------CATGTGCACTGTATATTGAGCAATATATGTGTTCATCATGA
TATCGGCATAGTAATTGATCACTCTCACATCAATTTGGGAGC-AAATGGTGGTGATTAATTGGATCTTCGTCAGGTGCCC
ACTTTTGTGATGACTCCAGGGTTATACCCCCCTTTGGGGAAAAAATGGTGTCCATTTGTGTTTCTTTCTTCGCTTGCTAG
CTCATTTTTGTTTTGAGGATTCATGATTCACTATTAT-------------------------------------------
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-------------------------------------------------------------------GTCATTATGTGTA
AATGGTA----ACTAAGCCTATAATTCTCCAGTGGTTTATAGAATGCATATAGCAGATATGAGATATCAGAAGCAGAATG
GAGAGAGAACAGACAAGAATTAGTTACTCTGAATACAGCAATAGAGTGCATCCTATATAGGTGGATCTTCTTCCTTGCTA
ATGTCCATGTTTTATCGTTCGGGTTCTTATTAATCGCTGGTTATGCATGTGATGTATTATCAATTTGCGGATATTGCTCG
TAGTCCAAC-----------------------------------------------------------------------
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>chr3D_435
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----------------------------------ATGAATCCAAGGATCATATCATTTTTGTGTCACTTGACTCGTACTT
TTCTAGTTAAATTGTTGGTAAAACATAATTTTCTGTTGCCGTGGACGCCTTGCATTTTTAGATGACGGAGTAGCCACAAC
TACAAGTCGTACTACCTAAATGTTCTGGAAAGAAAGAGAGAAATTGAAAACAAAACTTTGTCCTGTTTCCATGCATTC--
CTCCTTGCCCCAACATGCTTACTGTG--ATTAATTTTTTTTCGGACAATGAAAACATTAACTAATTTCATTGTTTAAGGT
TTACAAATAGTAAGTTGGTAAAAATTCATGGATCTACATAACCTGCATCGATCCATCAGACGGCCATCGGCATCACAT--
ACACTAGCTACCAAATCTATATTGGAAG---GTAGATGACAAAAGCAACAGACCTGCCGTCTAAAACACACGCCACAAGC
TAGCTAGATCAATCGAACACAC---------AACGCTAGGCTTCCAAAGGAAACTAACTAGCTACAGAGAAGCTAGGTCG
TCGGCACCGGCGAGGGTCGATCTCACCTTTGACGCCGGCCGGCTGGCCGGCCAACCGATGCCGTCCATGGACTGCGCGAT
CCACGTGGTGCTGCGGGTGGTCATGCGGAGGAGCATCTGCCGGCTGCACGAGGTCGTCGCCATGGCCGTGGAGCTCGGCA
CGGCGCTGCTCGTGGCCGTGCGGTTCTCCGGCATGGCCTTCCGCCGCACGCCAGCCCCGACTCAGGTG------------
---------GTCTCCGGGTCGACTCACTATTACTACTACGCCCCCGTGGCGGCCTCCATGGTTGGCATGTCCAGGCTCGA
CAGGCACTAGTC------ACCGGTGAGCTACATCCCGCTGGATTTGATGGCTAATCAATCGTGTTTTTTTTATTTTGTGA
GTAATAATGAAATTCAGTACTTGATTAGCTACATACACACATGTGCACTGTATATTAAGCAGTATATGTGTTCATCATGA
TATCGACATAGTAATTGATCACTCTCGCATCAATTTGGGAGC-AAATGGTGGTGATTAATTGG-----------------
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>chr3B_450
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-------------------------------------------------GTACCATCTTTGTGTCACTTGACTTGTACTT
TTCTAGTTAAATTGTTGGTAAAACATAATTTTCTGTTGCCATGTACGCCTTGCATTTTTAGATGACGGATTAGCCATAAC
TACAAGTCGTACTACCTAAATGTTCTGAAAAGAAAGAGAGAAATTGAAAACAAAACTTTGTCATGTTTTCATGCATTC--
CTACTTGCTCCAACATGCTTACTGTG--ATTAACTATTTTTTGGACAATG-AAACATTAACTAATTCCGTTGTTTAAGGC
TTACAAATAGTAAGTTGGTAAAAATTCATGGATCTACACAACTCGCATAGATACATCAGACGGCCATCGGCATCACAT--
ACACTAGCTACCAAATCTATATTGGAAG---GTAGATGACAGAAGCAACCTACCTGCCGTCTAAAACACACGCCGCGAGC
TAGCTAGATCGATCGAACACAC---------AACGCTAGGCTTCCAAAGAAAACTTACTAGCTGGAGAGAAGCTA-GTCG
TCGGCACCGGCGAGGGTCGATCTCACCTTTGACGCCGGCCGGCTGGCCGGCCAACCGATGTCGTCCATGGACTGTGCGAT
CCACGTGGTGCTGGGGGTGGTCATGCGGAGGAGCATCTGCCGGCTGCACGAAGTCGTCGCCATGGCTGTGGAGCTCGGCA
CGGCGCTGCTAGTGGCCGTGCGGTTCTCCGGCATGGCCTTCCGCCGCACGCCAACCCCGACACAGGTG------------
---------GTCTCGGGGTCGACTCACTACTACTACTATGCCCCCGTGGCCGCCTCCATGGTTGGCATGTCCAGGCTCGA
CAGGCACTAGTC------ACCGGTGAGCTACACCCCTCTGGATTTGATGGCTAATCAATCGTGTTTTTTTT-----GTGA
GTAATAATGAAATTCAGTGCTTGTTAGCT---------ACATGTGCACTGCA-------CAATATATGTGTTCATCATGA
TATCGACATAGTAATTGATCACTCTTGCATGTATTTGAGAGC-AAATGGTGGTGATTAATTGGATCTTGGTCAGGTGCCC
ACTTTTGTGATGACTCCAGGGTTATACCCCCCTT--GGGAAAAAACGGTGTCCATTTGTGTTTCTTTCTTCTCTTGATAG
CTCGTTTTTGTTTTGAGGATTCATGATTCACTATTAT-------------------------------------------
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-------------------------------------------------------------------GTAATTATGTGTA
AAC-GGTAACTACTAAACCTATAATCCTCCAGTGGTTTATAGAATGCATATAACAGATATGAGATATCAAAAGTAGAATC
GAGAGAGAACAGACACGAATTTGTAACTCTGAATATAGCAATAGAGTGCATCCTACATAGGTGGATCTTCTTCTTTGTTG
ATGTCCAGGTTTTATCATTCGGGTTGTTATTCATCGCTGCTTATGCATGTGAAGTATTATCAATTTGCGGATATTTCTCC
TAGTAGTCCAAC--------------------------------------------------------------------
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>chr3D_717
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-------------------------------------------------------------------------------T
TTAAAAATGGTAAGTTAGTAATTTTTCATGGATCTACACAACTTGCATCGGTCCATCAGACGGCCATCGGCATCACGTAC
ACACTAGGTACCAATTCTATATTGAAAGGTAGTAGATGACAAAAGCAACCTACCTGCCGTGTAAAACACACGCCGCGAGC
TAGCTAGTTCGATCGAACACACAACTAAATTAACGCCAGGCTTCCAAAGAAAAG---CTAGCTAGAGAGCAGCTAGGTCG
TCGACACCGGCGAGG-TCGATCTCGCCTTTGCCGCA------------GGCCGATCGATGTCCACCATGGACTGCGTGAT
CCATGTGGTGCTGGGGGTGGCCATGCGGAGGTGCATCTGCCGGCTGCACGAGGTCGTCGCCATGGCGATGGAGGTCGGCA
CGGCGCTGCTCGTGGCCGTACGGTTCTCCGGCATGGCCTTCCGCCACACACCAGCGCCGACTCAGGCGGTCTCGGGGTCG
ACTCAGGCAGTCTCGGGGTCGACGCACTACTACTACTACGCCCCCGTGGCTGCCTCCATGGTTGGCATGTCCCGGCTCGA
CAGGCACTAGCACTGGGGACCGGTGAGCTACACCCCTCTGGATTTGATGGCTAATCAATCGTGTATTTTT-ATTTAGTGA
GTAATAATGAAATTCAGTGCTTGATTAGCTACATACACACATGCGCACTGTATATTAAGCAATATATGTGTTCATCTTGA
TATCGATATAGTAATTGATCAGTCTCGCATGCAT----------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--------------------------------------
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----------------------------------------------------S---------------------------
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-------S-S--S-------------------------------------------------------------------
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------------------------------------------------------------------------S-------
-------------------S---------------------S-----------S--------------------------
------------------------------------------S--------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----
-----------------------------S---------------S----------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------S-----------------------------------
---------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_207
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---------------------------ACTGGCGGATCTGAACCAAG---------------------------------
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>reverse_2213
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----------------------------------------------------TTCAGATGCGCAGCAAAACC--------
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