>input_sequence_85902
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------------------------------------------------------------------------ATGAGTTC
CATGGAGGGAAGCACTGGGAAGTTTCCAGAACCTGCAGGAGGGGGCACCGGAGCCAGCAGTGTGAAGACGTCGTGGCCAG
AGGTCGTCGGGATGTCTGTTGAGAAGGCCAAGGAGATCATACTCAGGGACAAGCCTGATGCTGAGATAGAGGTCCTGCCA
GTCGATGCGTGGGTGACCCAGGACTTAAGGCCCGACCGTGTCCAAATCTTCGTCGCTGTTGCCGACACCCCTACGGTTGG
TTAG----------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G033900
GGCACGCATACATTCCTTCGCGCCTGCATAGCTAGAGCTAGCCTGTGAAGGGTGTGTCGGCGACGATATCGACGAAGATG
CGCACGCGGTTGGGCCTCAAGTCCCGGGTCACCGGTGACCCAGCTGGCAGCACGACAATGTCGGCGTCGGGCTTGTCTTT
GAGTATGATCTCCCTGGCCTCCTTTATGGACTTGCCCACCACCTCTGGCCATGACTTCTGCCACGACTCGCCGGCGAGGT
CTCCCGTGCCAACTGGAACCTCCATGGAGCTCATCGTCGATGGACCAGCCTACAAATCAGTTTTCCAAAAGCGAGAAATA
GGTCAGTCTTAGAGAGAAAGTAGCACCAAAACTGAAACTAATTCATCCATAGCAAGATGCGTTTCTAATTAAGCAAAATA
CGCTAGCTAGCTAAAGATTGATCGACAAAATTCAGATGGGATACG---TATTTGTGATCCGACTCACCGGCTAAGTGGAC
CT---CAAGAAGCTTGTTTCTTAATCTTCTGAGCCTGGTTGCTAACTTGGTGCTGCATAAACACATTGCAATTGCATGGA
TGGGTACTTATAGGGGAGATCGATATAAGCGGCACTGTGTTATGTGCAGAGAAGATGCATG------------------T
ACCCAGGG---GAA----GGCGCGTGATACACGAGATAAGATGCTGATTGGCCGGACTAGATTTCGTGATGGATAACACG
TACGGATGCTAAGGAAGACGACAGCATACCACGTGATTCACAGGTCCATCGACTTGTAGCTAGGAGCTCAATGAACCATA
GCCGTTTTCCGGTGCTGTAGTGCTCCTCAACTTAGTTAACTATAACTAGTATAAATGCCACACAATAAGTTGATGCTATA
TCATCAACTTCTCCTTGCATGTCTAG-AACATTCAATCAGTACTTCTGGTGAGTGTGTGCCCGGTCGATTTTTTTTGCTC
ACCCATTTTCCCTCATGGTTTATAACATGCTTACCGCTTTATTTCTCTTGATCCAATAGTTCATTGAAGAACATGAGTTC
CATGGAGGGAAGCACTGGGAAGTTTCCAGAACCTGCAGGAGGGGGCACCGGAGCCAGCAGTGTGAAGACGTCGTGGCCAG
AGGTCGTCGGGATGTCTGTTGAGAAGGCCAAGGAGATCATACTCAGGGACAAGCCTGATGCTGAGATAGAGGTCCTGCCA
GTCGATGCGTGGGTGACCCAGGACTTAAGGCCCGACCGTGTCCAAATCTTCGTCGCTGTTGCCGACACCCCTACGGTTGG
TTAGCTAGCTTATCA---GGCATGAATCATTCATAATTATGTAACAGAGAATAAAGATATCTGGCGCATCGGGGATGTAC
TTTCTCTTAGATAATCATTTAAATGAAGGAATAAAGGCATACTGGGCATGAGCGAATCATGCCCAAGTTCAGGCTTCAGT
GTATTCATCCATGACTTGTTGGGC--------------------------------------------------------
-------------------GGTGCTAGTATTTCACGTTGCGAGTTTTTCTTTTTGACAGGAATTTCAAGTTGTGAGTTGG
CACGCTAAACCTTAGGATAATA----------------------------------------------------------
--------------------ATTATTTGGAACTAAGCACAAATTGGTCAGTACTTACAGTAACTGAAAGTTATGTGCCAC
CCTAAATCTCAAGCAAGAGCAAAATCGTAAATATATGACACTAGTAGAAACCCTAGTATTATCATCGGTACTCAAAGAAC
CATAACCGCTTTATCGGCTGCACAAATAATGAC-TTATATCACTTTCACGTGAACTTTAAACTACCTGTAACTTTAATGT
GATAGGCATGCAGCAAAGGGGCGCGACTCTTTTTGTTCCAAACATTGACAAATGTTTTGATTGCTTGCAAAGTTTTATTA
TCGAATGGCATTCGTGAAAAATGTGGCAAAAAAATATCAGGCGCTCCAAAATGCTGCCATGTCCTTTGTATGGAACCAAT
TATGTTTTCCTTAATTATTTTTCTGAGTTCCTGAACATATCATCGCTAAATTTCTTGAGGAGTTGCAGTGGGCTTCCAAC
TAGGTAGAACTCTTCAAGTTGAAAAA-AGATCAAGTATGCTTCCTTCAAGCTGAAAAAACAAACAACCTTCACCAAACCA
TATAGTTTATGACATACACCGTTTCAATTGGATTGGCTAGGTATAAGAATCCATAACATGGCTGAAAATTATTTCCTTTT
TGTACATGATGCCAGATGGGGCGAACACAATGGCCAATGGTTCCAAAGTGGTCCCTACCATTGCAGAGGAGGAGCCCACT
TCTAGTCGATGTTGTCTCTAATGATGATGGTGTCGTGGCGTG--------------------------------------
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>chr1A_1
GGCACGCATACATTTCTTCGCGCTTGTAAAGCTAGAGCTAGCCAGTGAAGGGTGTGTCGGCGACGGTATCGACAAAGATG
CGCACGCGGTTGGGCCTCAAGTCCCGGGTCACCGGCGACCCGGCTGGCAGCACGACGATGTCGGCGTCAGGCTTGTCTTT
GAGTATGATCTCTCTGGCCTCCTTTATGGACTTGCCCACCACCTCTGGCCATGACTTCTGCCACGACTCACCGGCGAGGC
CGTCGGTGCTAGCTGGGACATCTGTGGAGCTCATCGTTGATGGACGAGCCTACAAATCAATTTTCCAAAAGCGAGAAACA
GGTCAGTCTTAGAGAGAAAGTAGCACCAAAACTGAAACCGATTGATTGATAGCAAGCTGCATTTCTAATTAAGCAAAATA
TGCTAGTTAGCTAAAGATTGATCGACAAAAGCAAGATGGATATGTGTATATCTATGATCCGACTCACCGGCTGAATGGAC
CT---GAAG---CCTATTACTTAATCTTCTCAACTTGGTTGGTATCTTGATGCTGCATAAACACT------TTGCATGGA
TGGGTACTTATAGGGGAGATCGACATAAGCGACACTGTGTTGTGTGCAGAGAAGATGCATGCCCTCACATGCATGCATGT
ACCGAGGGGAAGAA----GGCGCGTGATACACGAGATAAGATGCTGATTGGCTGGACTGGATTTCGTGATGGATAACACG
TACGGATGCTAAGGAAGAGGACAGCATACCACGTGATTCACAGGTCCATCGACTTGTAGCTAGGAGCTCAATGTACCATC
GCCGTTTTCCGGTGCTGTAGTGCTCCTCAACTTAGTTAACTATAACTAGTATAAATGCCACACAATAAGTTGATGCTATA
TCATCAACTTCTCCTTACATGTTTAG-AACATTCAATTAGTTCTTCTGGTGAGTGTGTGCCTGGTCGATTTTTTTTGTTC
ACCCATTTTCCCTCGTGGTTTATGCTTT-------------ATTTTCTTGATCCAAGAGTTCATTGAAGAACATGAGTTC
CATGGAGGGAAGCACTGTGAAGTTTCCAGAGCCTGCAAGTGGGGGCACCGGAGCCAGCAGTGTGAAGACGTCATGGACAG
AGGTCGTCGGGATGTCCGTTGAGAAGGCCAAGGAGATCATCGCCAAGGACAAGCCTGATGCTGAGATAGAGGTCCTGCTA
GTCGATGCGTTGGTCACCCAGGACTTAAGGCCCGACCGTGTCCAAATCTTCATCGTTGTTGCCGACACCCCTACGGTTGG
TTAGCTAGCTTATCA---GGCATGAATCATTAATAATTATGTAACAGAGGATAAAGATATCTGGCACATCAGGCAGGCAC
TTTCTCTTTGAT-------------AAGGAATAAAGGCATGCTGGGCATGAGCGAATCATGCCCAAGTTCAGGCTTCAGT
GTATTCTTCCATGACATGTTGGGCATGACATGTATAATTGCGCTCTCTGTTTCATCTAGATTACTCTTACTAGGCAGGGA
ATGTGCCCGAATGCTCGGTGGTGCTAGTATTTCATGTTGCGAGTTTTTCTTTTCGACAGGAATTTCAAGTTGTGAGTTGG
CACGTTAAACCTTAGGTTTGTTCACATCGGTTAGCCGGTCATTTATCGTATTCCCTAGAGCAAACATCCAAAAAGACGAC
AACAACAAGAGGGATAATATATTATTTGGATCTAAGCACAAATTGGTCACTACTTACAGTAACTGAATGTTATGTGTCAC
CCTAAATCTCGAACAAGGGCAAAATCATAAATATATGACACTAGAAGAAATCCTAGTACCATCGTCGGTACTCAAAGAAG
CATAACCGCTTTATCTGTTGCACAAATAATGATGTTTTATCACTTTCACATGAACTTTCAACTATCTGTAACTTTAATGT
GATAGGCATGCTGCAAAGGGACGCGGCTCTTTTTGTGCCAAACATTGACAAATGTTT-GATTGCTTGCAAAGTTTCATCA
TCGAATGACATTCGGGGAAAACGTAGCAAAAATATCGACA---CTCCAAAATCCTGCAAAGTCCTTTATATGCTGCCAAT
TATGTTTTCCTTAATT----TTCTGAGTTCCTGAAAATATCATCGCTAAATTTCTTAAGGAGTTGCAGTGGGCTTCCAAC
TAGGTAGAACTCTTCAAGTTGAAAAGGAGATCAAGTATGCTTCCTTCAATCTGAAAAAGC-AACAACCGTCACCAAACCA
TATAGTTTATGACGTACACCGTTTCAACTGGGTTGGCTAGGTATTAGAATCCATAACATGGTTGAAAATTATTTCCTTTT
TGTCAATGATGCCAGACGGGGAGAACACAATGGCCAATGGTTCTGAAGTGGTCCCTACCATTGTAAAGGAGGGCCCCACT
TCTACTTGATGTTGTCTCTAATGATGATGGTATCATGGCGTGTCGATTGGATAGGCTTCATCCATGATGACGATCTTCAT
GGAGAGGATGTTGGCCAAGCCTTCTTTCCCCGGCTCATCTTTGTATTTGAAAAGTTCACGTATTAAAACACATTAAGTTG
TTGACACATTTCTGGATATACATTTGTGTACTTTGGAAATAAGGTTTAAGTAGTTACGAAAAAAGAAAGTAAAAACAATA
CCATACCAAAAAATGTTTAAAAAGTGAAACTAAAAGTAGGAGAATAGGAAAAGAAAAACCAACAGAAAGAGAAAGGAAAC
AAGATAAAGAAAGGGGGAAAAGGAGAAAACAAAACAAAACAACAGCGGACATGGTCACAGTCCATGTAAGAACTCTAGAA
GCGTTTTGGTGACATTTTATAGCTTAAGTCATTAAAATAGGTTTTTCCAGCCACATGTATGAATCCGGTTGAAGGGGACA
CCAAATAGACTTCATCTGCGCATGCCACTCTAATTTTGAGGACGACATTGAGTTAATCAAATACTCGGATCTACCACTCT
CTCATCAAACTAAAATTACAGTGCAAAAACATACACATAAGTAGCGATCCATGCCATGCTACTGCTCGACATGCCTGCAT
TTATTCATTCATTGATAAAAATGTATTCACGAACATGCATGGTGCAGGCATACATTCCTCTTGGCCTACAAAGCTGCCTA
GCCAGTAAAAGGTGTTTCGGCCACGGTGTCGACAAAGATGGGCACACATTTGGGCCTCAAGTCCAGGGCGACCTGTGCCC
CTGCTGGGAGGACGACGATATCATCATCATGCTTGTCCTTGAGAATGATCTCCCCGGCCTCCTTGATGGACTTCCCCACC
ACCTCCGGCCACGACTTCGATTCCTCAACAAAGAGGCCTCCATGGGTGGTGTCGTCCATGGAGCTCATCGTCGATCTGGC
ACGCTACAAAACAATACACTGAGCTAGCAATAGCAAGCTGTGTTTCAAACTAAGCAAAATTTACCAATGCTAACTAGGTA
AAGATTGATTGACAAAGGCTAGATGGGATACTCACGTTGTAGCTAAATAAACCTCGAGCTTGTTAATTGATCGTGGATTG
GTTGATATCAGCATATAACTTAGTACAAGTACTAAGTTATGCGTGCATAGCACGTCAGAGCTCATATTATCAAATTACAA
CCCAAGATAGACATATTGTTATTGTATTAATTATAACAAGGAAATGGAATTGTGAGGCATATATATCTATATCTATACCA
ATATAAAAAGACCCAAAGGGGCAGATTCAAACCATCTCAACCGTCAAATATCATGTGATCTAGTGGTTCGAATCGCTCCA
ATGTTGAGCACTAAACACGTTTAACGCTCTAATTACCCACCACTGCCATTGATTATAAACACGTTTTGACTCAACGCCAG
CTCATGAAATCTGCCATGTAATTAATATCCTACCATTCCCGCGAAAAAAGTAATTAATATCTTACCAAATATCAACGTGC
AACAGATATATCTTACCTAATATAACATGCAACTAATATCCTACCTAATATAAACATGCATTGCACGTACATTATTACTA
GTGATGTATAAGATGCAAAAGCACGTAACAATATATCGAGTGTGTTTTGTCTAGGTATCTATTCTGGCTATATAAAGCTA
TTGTTCTATCTACAAAGATAAGTATGATTTATGAAAGTACATAGCCTTGAATACAGAGTAAAAATGAATGACAGTTTGGA
CAGAAAAAAAAATTATGAGAGTATGGGTATGGAAGAGTTTGGAATAAAGTAGAAGTGTACTTTAAGTTTTGTGCAAAATG
TCCATATGGTATAAGTCCAACCATAGAATCCTCTAGATAGTACACTTAACAAAATCTAGTGAAGTAATGAGAAGATTCAA
CGGTCAGCAACACTCGGATTTGCCATGTTTCTATCGTCAGATCGGCTTCATCCAACGGTTCTTATTCCAAATTATCCGTA
CACTATATAGTGATATAGATGATATAGATATAGATATAGATGCGTATTTATAGGGGAGATTGGTAGATGCGGCGATGCAG
CTATGAGGTATCTGCAGAGAAGATGCTTGCACATCTACACATGCATTCACCCAAGGGGCGCGTGATACACGAGGTAGAGG
GTGCTCATAGGCCGCACTAGATTTCGTGATGGATAACACGTACGGGCGCTAAAGAAGAGGACAGCATACCAAGCGATTCA
CGGGTCAATCGACTTGTAGCAACATCTTCCTAGTGTGTACTTCTCCTTAACTTAGTTAATTACCAAGATCCTCTTGTATA
AATGTTGCCGATGCTATATCATCACCTTCTTGCACAGCTAGAACATTCAATCAATTCTTCAGGTGAGTCTGTGCTGCCTT
GTCATATTTTAACTACCCATTTCTTCCCAGTGATTATATCATGCTTAACACGCCGATTTTCTTGATCTATGAGTTCATTG
AAGAACATGAGTTCCGTGGAGGCAAAGGCGTGAAGTATCCAGGGCCTGCAGGAGGAGGCACCGTAGCCACTAGTGCAAAT
ACATCGGAGGTGGTCGGGATGTCCGTCGAGAAGGCCAAGGAGATCATCCTCAAGGACAAGGCTGATGCCGAGATCGAGGT
CCTCCCGGTCGACGCGTGAGTAACCTAGGACGTAAGGCCCGACCGTGTGCAA
>chr1D_1
GGCACGCATACATTTTTTCGCGCTTGCAAAGCTAGAGCTAGCCAGTGAAGGGTGTGTCGTCGACGGTATCGACGAAGATG
CGCACGCGGTTGGGCCTCAAGTCCCGGGTCACCGGCGACCCGGCTGGCAGCACGACGATGTCGGCGTCGGGCTTGTCTTT
GAGTATGATCTCTCTGGCCTCCTTTATGGACTTGCCCACCACCTCTGGCCATGACTTCTGCCATGACTCACCGGCGAGGC
TGTCGGTGCTAGCTGGGACATCTGTGGAGCTCATCGTTGATGGACCAGCCTACAAATCAATTTTCCAAAAGCTAGAAACA
CGTCAGTCTTACAGTGAAAGTAGCACCAAAACTGAAACTAATTCATCCATAGCAATATGCGTTTCTAAT-AAGCCAAATA
CGCTAGCTAGCTAAAGATTGATCGACAAAATTCAGATGGGATATG---TATTTGTGATCCGACTCACCGGCTAAATGGAC
CTCAAGAAG---CTTGTTTCTTAATCTTCTGAGCTTGGTTGGTAACTTGCTACTGCATAAACACA------TTGCATGGA
TGTCTACTTATAGGGGACATCGATATATGCGGCAGTGTGTTATGTGCAGAGAAGATGCATGCCCTCACATGCATGCATGT
ACCCAGGGGCCAGGGGCGGGCGCGTGATACACGAGATAAGATACTGATTGGCTGGACTGGATTTCGTGATGGATTACACG
TACTGCTGCTATGGAAGGCGACACCATACCACGTGATTCACGGGTCAATCGACTTGTAG-------------GAACCATA
GCCGTTTTCTGGAGTTGCAGTGCTTCTCAACTTAGTTAACTA--------------------------------------
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>chr1D_834
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----------------------------------------------------------------ATAAGGGGATGCTATA
CCATCAACATCTTCTTACTCAGCTACAAACATTTAATCAATTCTTCAGGTGAGTTGTACTGACTTGTGCTC-TTTTGTTT
ACCAATTTTTCCTCAAGGGTTATATCATGCTTACCTCTTTAATTTTCTTGATCCAAGAGTTCACTGTAGAACATGAGTTC
CATGGATGAAAGCACCGTGAAGTATCCAGATCTTGCGGGAGGGAGCACAGCAGCCAGCAGTGTCAAGACGTCGTGGCCAT
AGGTCGTCGGGATGTCTGTTGAGAAGGCCAAGGA---------------CAAGCCTGCTGCTGAGATAGAGGTCCTCCCA
GTCGACGCATGGGTGACCCAGGACTTAAGGCCCGACCATCTCCAAATCTTTGTCACTGTTGCCGACACCCCTATAGTTGG
TTAGCTAGCTTATTATCGGGCATCAATCATTTATAATTGTGTAACAGAGGGTAAAGACATCCGGCGCATCATGTATGTAA
TTTCTCTTTGATAATCTTTTAAATGAAGCAATAAAGGCATGCTGGGCATGAGCGAATCATGCCTGAGTTCAGCCTTCAGC
GTATTCATCATG--------------------------------------------------------------------
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>SNPs
--------------S--------S----S--------------S---------------------S--------------
-----------------------------------S-----S--------------S-----------------------
------------S--------------------------------------------------------S---------S
-SS-S----S-S----S--S--SS-------------S---------------------S------------------S-
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-------------------------------------------S------------------------------S-----
-----S---SSS----------------------S------S-------S---------------SSSSSS---------
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----------------------------------------------------S-----S---------------------
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----------------S------------------------S-------------------S---------------S--
------------------------S----------S-----S--S-----------S-----------------------
-----------------S------------S-------------------------------------------------
----------------------------------------SSS--S----------------------------------
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-------------------------------S-----------------S--------------------S--S------
--------S-------S-----------------------S---------------------------------------
---------------S----------------------------------------------------------------
----------------------------------S------------------S--------------------------
----S-----------S-SS-S----------------------------------------------------------
------------------------------S------------------S-----------------S--------S---
----------S-S----S--------S-----------------S-----S-------SS---S---------------S
---------------S-S--------------S---S------------S--------S-----S---------------
-----------S--------S----S----------S--------------------S-----------------S--S-
-------S------S-S----S--S-------S--SSSSSSSS---------S----S-S-------S----SSS-----
----------------SSSS---------------S--------------------S-----------------------
-------------------------S-----------------------S--------S-S-------S-----------
-------------S-------------S---S------------S----------------S------------------
---SS-----------S----S---------------------SS------------------S-S------SS------
----S-S------------------------S--S---------------------------------------------
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>forward_278
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------------------CCTCCATGGAGCTCATCGTC------------------------------------------
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>reverse_1401
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----------------------------------------ACTGGGCATGAGCGAATCAT--------------------
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