>input_sequence_85837
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-------------------------------------------------------------------ATGTTGTCCTTGC
TGCCGCGTGCGATGGCGAGCTCCACCAGCAGCGCTGCGGCGTCGGCCGCCGTGCTCCCGGAGACGGACTCCGGGTACTTG
GAGGCCGCACGCCCACTTAGGCAATTCCTCGCGATCTTGCAGGCAACGTCATTGGACACCACATCCCACAGGCCGTCGCT
TGCTAGTATGAGGAACTCGTCTTTGTCCGTCCGGTCCATGACGGTAACTTCTGGTTCCGCTATCACATATGGTTTCAGGT
AA------------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G238100
GAGCGCATGAGAGAGACCATGGAGAAGATTAGAAACACCCTCACGCCTCTCCTATTCGCGCCGGGAGGAAGGACCTGCTG
ATTTACTAGCGATATCTTTTGCGCTCCTCACTTCCTGTCGTTTGGACCTATTCCGTATTTCATTTTCATCGGTGCTGTCA
TGTATCATTTGAACTTAGTGGTTGTAGGTTTCAGTACTTGTTCGAATGCTGTCTTATGGCTTTATTAATTTAAAACCGAA
CGCTCCTAGTGTCTTCGTTTCAAAACGGCAATAGAAGGTCTCTTGATCGGTTGCATAAAAAAAAAGACAA-TGTGATCAA
GCGGCGAAGGCCCAGGCAAACGTTGGGGGTTCTTCTTCCCCAATTCCTCTCCATCTTCTTCTGATTCTGTAGCCACCAAA
ATGCATCGAACCAGACTACCAGGGAACCAAATTGAGTCATGAATCGACCGACAGTGCTAACACACT------GGTCCTGC
CACTCTGCCTCAACCCTCGATCATGAACCGCTTGGCATGAAGATCCAGGTGCAGTCATCTCACAAACTATTAGATCACCC
AAGTTCATGGCAAAGGTAATCCATGGACCACCTACAAGACGTTACTCAGACTCCAACCGCATGGAA--AAACCCAATTAT
CAAATCAGAACTGACGAAAGCAGCTTATGCTTCTTGCCGCTTCGCCCCGAACGTCGGTCACCATATAT-----AGAAGAA
CTAAAGAACCAACGCAACGCAATACAACGGCGGCACCAGCACGGCTACAAATAGCACACTCAACTCGACGGCAGCAAGGC
CACAACGTCCCTGAGCCCTCT--AACTACAACCATCCCAGCGAACTCAGCCGCAAATTCTTTCTTCCTCTCT--------
--CTCACTGGCGCCATGCTCGAATAATGTGACATCCC-ATCCAGCCGGCCACTCCTATAGTGTCACTAGTGCCACCTGGT
GCGGTTCTCTTTGATCACCGCCGCTGCCCTACTCTTCAGTCGCCGCAACTCGACCACGACGACGCTGATGTTGTCCTTGC
TGCCGCGTGCGATGGCGAGCTCCACCAGCAGCGCTGCGGCGTCGGCCGCCGTGCTCCCGGAGACGGACTCCGGGTACTTG
GAGGCCGCACGCCCACTTAGGCAATTCCTCGCGATCTTGCAGGCAACGTCATTGGACACCACATCCCACAGGCCGTCGCT
TGCTAGTATGAGGAACTCGTCTTTGTCCGTCCGGTCCATGACGGTAACTTCTGGTTCCGCTATCACATATGGTTTCAGGT
AATAGTCTCCTGAGATGGGCAGCCATAAGGAATTCAGAACAGTGCATAATTCGTGAGGTGTATATAAATC-TATGCATAA
TCCTTGTCAAGTTGTAACTAGGCTACTGGCAGTTTTCTTACCAAAGCTACTAC----CAATGTTAATATTTTCAAAACAA
CTATAGCACTGTCAATCTCAGCTAGAAATATTTAGCTTGTGCGTATATGTCTGCCGACAACAAATGTACAGATCAAGACG
GTACAGCATCGTACCGATTGACCTCGAAGTTGCGAGCACTCCCAGGATACGGTATCCATTCCAGTTAATGACCTTGCCAC
CAGCTGCTTCTACTCTTTCCATTTCGTCAGGTCGGTCTGGCTGTGTATCGTTAAAACAAGATAAAGACATCAACGTTCCC
ATATACACTACTGTCCTACAAAGGTGCAATTGCAGAAGAAGCGAAATTGTTCAAAAGGAAGTTATCCCAGCAAACAGAAA
TTCCCTAATGTC-TTGCATGGACAAACAATAGACACGACTGACATACAGAACCACCAGCTTGCAGTGCAAAATGACGGAT
ATGATGAGAAATGATGCTTTTGTATAAAGTTGCTACCACGGAAACAGCACGTTCGACGAAAGTCAGGCGGATAACTAAAG
GCAGAATGACACATCAACTATCTGCATCTGAGGTTTTGAAAACAAGATGTTCTAGTTGCGGATATATCAAGCCATATCAA
GTGC----GACAGGAGACTTCCGCTCTTCAAGTATTGTTGCCAGAGTACCAAACAAGACAAATTGTCTATCACCAACCTT
AAGCAGTTGAGTAGCATTGCATTG-------ACCTTGCCACCGTTTAGATACAAATCTAAATAAAACTGATCCACGCGGC
TACATGTTTGTGTTTTTGTTGAGCAAGATAAGGCTTCACAAGCTCTGCTTGGGGAAAAATATTCCTATTGTTTTGAAGCA
GCACCTTGAATCAACCATTTTCATTTATGAACAGATGCAAAATTGTGCACAATCTCTGC
>chr3B_270
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-----------------------------AATAGAAGGTCTCTTGATCAGTTGCATAAG--AAAAGAAGA-TGTGATCAG
GCGTCGAAGGCCCAGGCAAACGTTGGGGGTTCTTCTTCCCCAATTCCTCTCCATCTTCCTCTGATTCTGTAGCCACCAAA
TTGCATCGAACCAGACTACCAGAGAACCAAATTGAGTCAGGAATCGACCGAGAGTGCTAACACGCT------GGTCCTGC
CACTCTGCCTCAACCCTCAATGATGAACTGCTTGGCATGAAGATCCAAGTGCAGTCATCTCACAAACTATTGTATCACCC
AAGTTCATGGCAAACGTAATCCACGGACCACCTACAAGGCGTCACTCAGACTCCAACCGCATCATGGGAAAACCAATGAT
CAAATCAGAACTGACGAAAGCAGCTTATGCTTCTTGCCGCTTCGCCCGGAACGTCAGTCAGCATATATATAGAAGAAGAA
CTAAAGAACCAACGAAACGCAATACAACGG------CAGCACGGCTACAAATAGCACACTCAACTCAACGGCAGCACGGC
CACAACGTCCCTGAGCCCTCTCTAACTACAAGCATCCCAGCGAACTCAGCCGCAAATTCTTTCTT--TCTCC--------
--CTCCCTGTCGCCATGCTCGAATAATGTGGCATCCCCATCCAGACGCCCACTCCTATATTATCACTAGTGCTACCTGGT
GCGGTTCTCTTTGATCACCGCCGCTGCCCTACTCTTCAGTCGCCGCAACTCGACCACGACGACGCTGATGTTGTCCTTAC
TGCCGCGTGCGATGGCGAGCTCCACCAGCAGCGCTGCGGCGTCGGCCGCGGTGCTCCCGGGGACGGACTCCGGGTACTTG
GAGGCCGCGCGCCCACTTAGGCAATTTCTCGCGATCTTGCAGGCAACGTCATTGGACACCACATCCCACAGGCCGTCGCT
TGCTAGTATGAGGAACTCGTCTTTGTCCGTCCGGTCCATGACGGTAACTTCTGGTTCCGCTATCACATATGGTTTCAGGT
AATAGTCTCCTGAGGTGGGCAGCCATAAGGAATTCAGAACAGTGCATAATTTGTGAGGTGTATATAAATC-TATGCATAA
TCCTTGTCAAGTTGTAACTAGGCTACTGGCAGTTTTCTTACCAAAGCTACTGC----CAGTGTTCATATTTTCAAAACAA
ATATAGCACTGTCAATCTCAGCTAGAAATATTTAACTTGTGCATATATGTCTGCCGACAAGAAATGTACAGATCAAGACG
ATACAGCATCGTACCGATTGACCTAGAAGTTGCGAGCACTCCCAGGATACGGTATCCATTCCAGTTAATGACCTTGCCAC
CAGCTGCTTCTACTCTTTCCATTTCGTCAGGTCGGTCTGGCTGTGTACCGTCAAAACAAGAGAAAGACGTCAACGTTCCC
AC--ACACCACTGTCCTACAAAGGTCGAATTGCAGAAGAAGCGAAATTGTTCAAAAGGAAGTTATCCCAGCAAAGAGAAA
TTCCCTAATGTC-ATGCATGGACAGGCAATAGACACGACTAACATACAGAACCACCAGCTTGCAGTGCAAAATGATGGAT
ATGATGAGAAATGGTGCTTTTGTATAAAGTTACTACCACGGGGAGAGCATGTTCGACAAAAGTCAGGCGGATAACTAAAG
GCAGAATCACACATCAACTATCTGCATCTGAGGTTTTGAAAACAAGATGTTCTAGTTGTGGGTATATCAAGCTATATCAA
GTGT----GACAGGAGACTTCCGCTCTTCAAGTATTATTGCCAGAGTACCAAACAAGACAAATTGTCTATCACCAACCAT
AAGCAGTTGAGTAGCATTGCATTGTGCTAGTACCTTGCCCCCGTTTAGATACAAATCTAAATAAAACTGATCAACGCAGC
TACATATTTGTGTTTTTGTTGAGCAAGATAAGGCTTCACAAGCTCTGCTTGGGAAAAAATATTCCTATTGTTTTGAAGCA
GCACCTTGAATCAACTATTTTCATTTATGAACAGATGCAAAATTATGTACAATCTCTGC
>chr3A_270
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-----------------------------AATAGAGGGTCTCTTGATCGGTTGCATAAA--AAAAGATAAGTGTGATCAA
GCGTCGAAGGCCCAGGCAAACGTTGCGGGTTCTTCTTCCCCAGTTCCTCTCCATCTTGCTCTGATTCTGTAGCCACCAAA
TTGCATCGAACCACACTACCAGAGAAGCAAATTGAGTCATGAATCGACCGACAGTGCTGACACACTGACACTGGTCCTGC
CAATCCGCCTCAACCCTCAATCATGAACTGCTTGGCATGAAGATCCAAGTGCAGTCATCTCACAAACTATTGGATCACCC
A----------------------------------------------AGACTCCAACCGCATGGA---AAAACCAATGAT
CAAATCAGAACTGACGAAAGCAGCTTATGCTTCTTGCCGCTTCGCCCCGAACGTCAGTCACCATATAT-----AGAAGAA
CTAAAGAACCAACGCAACGCAATACAACGG------CAGCACGGCTACAAATAGCACACTCAACTCAACGGCAGCACGGC
CACACCGTCCCTGAGCCCTCT-TAACTACAACCATCCCAGCGAA--CAGCCGCAAATTCTTTCTT--TCTCTCTCTCTCT
CTCTCTCTCTCGCCATGCTCGAATAATCTGACATCCT-ATCCAGCCGGCCACCCTTACATTATCACTACTACCACCTGCG
GTTT---TCTTTGATCACCGCCGCTGTCCTACTCTTCAGTCGCCGCAACTCGACCACGACGACGCTGATGTTGTCCTTGC
TGCCGCGTGCCATGGCGAGCTCCACCAGCAGCGCCGCGGCGTCGGCCGCCGTGCTCCCGGAGACGGACTCGGGGTACTTG
GAGGCCGCACGCCCACTTAGGCAATTTCTCGCGATCTTGCAGGCGATATCATTGGACACCACATCCCACAGGCCGTCGCT
TGCCAGTATGAGGAACTCGTCTTTGTCCGTCCGGTCCATGACGGTGACTTCTGGTTCCGCTATCACATATGGCTTCAGGT
AATAGTCTCCTGAGAT-GGCAACCATAAGGAATTCAGAACAGTGCATAATTTGTGAGATCTATATATCTATTATGCATAA
TACTTGTCAAGTTGTAACTAGGCTACTGTCAGTTTTCTTGCCAAAGCTACTACGTACCAATGTTAATATTTTCAAAACAA
CTATAGCACTGTCAATCTCAGCTACAAATATTTAACTTGTGCATATATGTCTGCCGACAAGAAATGTACAGATCAAGACG
GTACAGCATCGTACCGATTGACCTCGAAGTTGCGAGCACTCCCAGGATACGGTGTCCATTCCAGTTAATGACCTTGCCAC
CAGCTGCTTCTACTCTTTCCATTTCGTCAGGTCGGTCTGGCTGTGTACCGTCAAAACAAGAGAAAGACATCAACGTTCCC
AC--ACACTACTGTCCTACAAAGTTGGAATTGCAGAAGAAGCGAAATTGTTCAAGAGGAAGTTATGCCAGCAAAGAGAAA
TTCCCTAATGTCTTTGCATGGACAAGCAATAGACACGATTAACATACAGAACCACCAGCTTGCATTGCAAAATGATGGAT
ATGATGAGAAATCATGCTTTTGTATAAAGTTGCTACCGCGGAAAGAGCGCGTTGGACGAAAGTCAGCCGGATAACTAAAG
GCAGAATGACACATCAACTATCTGCAT-TGAGGTTTTGAAAACAAGATGTTCTAGTTGCGGATATATCAAGCCATATCAA
GTGCATGCGACAAGGGACTTCCGCTCTTCAAGTATTATTGCCAGAGTACCAAACAAGACAAATTGTCTATCACCAACCTT
AACCAGTTGAGTAGCATTGCATTGTGCTAGTACCTTGCCACCGCTTAGATACAAATCTAAATAAAAATGATCAACGCGGC
TACATATTTGTGTTTTTGTTGAGCAAGATAAGGCTTCACAAGCTCTGCTTGGGGAAAAATATTCCTATTGTTTTGAAGCA
GCACCTTGAATCAACTAGTTTCATTTATGAACAGATGCAAAATTGTGCACAATCTCTGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------SS------S------------
---S------------------------------------------------------S---------------------
S---------------------S---------------------------------------------------------
------------------S---------S------------------S-----------------------S--------
--------------S--------S--------------S---S----------------------S-----S-----S--
-------------------------------------------------------S------------------------
------------------------------SSSSSS------------------------------S---------S---
-----------------------------------------------------------------SS-------------
-----S---S-------------------------------------------------S-S------------------
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--------------------------S-----------------------------------------------------
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---------------------------------------------------S----------------------------
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----------------------------------S-------S-----------------S-------------------
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-----------------------------------------------S---S---------S------------------
-SSS----------------------S-----------------------------------------------S-----
-------------------------S--------------S----------------------------------S----
--------------------------------------------S-----------------------------------
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------------------------------------S-------------------------------------------
------------------------------------------------------------------------S-------
-----S--------------------------------------------------------------------------
---------------S-------------------------------------------
>forward_56
------------------------------------ACCCTCACGCCTCTCCTATT------------------------
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>reverse_1885
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--------------------------------------------CAGCACGTTCGACGAAAGTC----------------
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