>input_sequence_85834
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---------ATGGCCGCTCGCATCGGCGCTGCTGTCGTCTGCCTGGTGTTGATCGTTAGCCTGGGGCTCGTAGCCACGCC
GACCGAAGCTCGCGCCGTGGCTGGCGTCGTCTATGCTGCCGCGGTCACCAATGCGGCCGGCGCCGCGGCCGCTACCGGCG
GCGCCGGCGTTCCTCCGGGGAGGTGGAA---CGCGAGGAGGCTGCAGGGAGACGCCGCTCACAAGCGGGAGGTGCCAGGC
GGCCCGGACCCGGAGCACCATCACTAG-----------------------------------------------------
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>chr3B_1_TraesCS3B01G327700
TTTTTTGAGAAATTAATGAAGGAGTGATACAGTCCATAATTGTCTTAACCTTTTTTTTCATACACTACAGCTAGCCTTCT
CACTAAGTGAAACTGAGAACTATGGTCAATATTACAGGAAAGGAGTGAACCAACCTGTGGTTGGATGGTTAGAGGGACAC
TGGTATCCCCAGCCCATTAGGATGCGCTTTCAGTGGGAGGAGACGTTCCCGTCGACGACGAGGCGCCTACGGTGACTTCG
TAAATCTTAAGATGATATGCCGGCTCAGTCTCTCGAAGGTGCTCATAAGGATAGGATGTGTGTGTTTATAGGAATGAGTG
TATGCGCGTATGTAAATATTACAGGAAAGGATCTTCATGAATTAGCCGCGCTATGCAAAACT--------AGTCTAGTTT
TATCGTCTCAACCGACACGGCGAGACCACATTGTTATCGTGGTTCCTCCATCTATCCATGTGCCTTCCACATAAGTGAAA
CCTGTGTAGTTCTGGGCACAATGTACGCACGCTCACGACGAGAGCGGCCGTGGTGGCATATCCCTCCGTGGCGCACTGAC
TTGGATTGGATTATTCTGATCGAGCAATTAGTCGTGCAGAGAGAACATGGGAGCACAGAAGCAGAACATTGGCTCATGGC
CACGACGGTGCGTACGCTAGTTAATGCAAAAAGGAAT----------AGGATCATCGTGACCGACGGCGCATGATCTTCT
TAGCCCCTTTGCAGTGGTGGCCACTGGGTCAATCCGACGGTGCCCGACGTGTCCTTCCTTGTCCTTTGCACACAAAAAGC
GATCGGTCGTTCCACCAATTATCCGCAACATT-GCCCCGGGTCCCGTTCTAGGTTTCTTTTGTAACCGCCGATCCTTGTC
ATCTCTTATCGTCT-CGCCGCCTCGCCCTATAAATACCGCTGATCCATG-AGACACACA------TTCAAACTCACACCA
TCGATC--------------A--------AAAGCCTCTCTTGTGTTGCGTCGAGCACGTAGTGTACCGTCCTCGTCTCCA
GATCCATCCATGGCCGCTCGCATCGGCGCTGCTGTCGTCTGCCTGGTGTTGATCGTTAGCCTGGGGCTCGTAGCCACGCC
GACCGAAGCTCGCGCCGTGGCTGGCGTCGTCTATGCTGCCGCGGTCACCAATGCGGCCGGCGCCGCGGCCGCTACCGGCG
GCGCCGGCGTTCCTCCGGGGAGGTGGAA---CGCGAGGAGGCTGCAGGGAGACGCCGCTCACAAGCGGGAGGTGCCAGGC
GGCCCGGACCCGGAGCACCATCACTAGAGAGCCGGGAGCCATGCATGACGCGCCGACGTAC----GTAGGTAGAGCAGAT
CGATCTTCCACCTACGCACGGTGCCATGCGCGTGGCAGCCTCTATATATCAGGTGTTCCGGATGAGTTTGGAAAGGTAAA
TTATTTGCATTT-GGTCGAAGGAGCTAGCTAGCTAGCTGTGTGCTTAGAGGAACTACGTGTAC--GTATTCGT-TTGTGC
ATCCTACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCAGTGAGATATGTTGTAAAACCTGGCCGAAACATGTAATAA
TGTATTACTACATGCTCACAAATTGGCAGTAGTAAAAAAATGGAGTGGATGGTAACGCAAAAAAGAAAATTACGAACAAA
AAAAGTTAAAATACTTCGATCCAGATTGATATGTAGTAATGCATTACTGCATGTGCTCTGTTGTTCCCAAGCATAATCTA
GCATTTGTGTACAACAAAAAAGTCAAAATGCTTCGATCCAGGTTGATATATAGTAATGCATTAGTGCATGTTTATGTTTT
TCCCAAGCATAATCTAGCATTTTGTGGGCAACGAAAAAGTTAAAATTCTTCGATCCAGGTTAAAAAGTCAAATGGACAAG
TTTTATGTACATAGAAATCTAGCCACACCGATCGCAAAAAAACCAAGTCCACTGCGACAAGCCATGTGCTTTTAC
>chr3A_335
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--------------AATATTACAGGAAAGAATCTTCATGGATTAGCCGCGCTATGCAAAGCT------TAAGTCTAGTTT
TATCGCCTCAACCGACACGGCGAGACCACATTG-TATCGTGGTTCCTCCATCCATCCATGTGCCGTCCACATAAATGAGA
CCTGTGTAGTTCTGGGCACAATGTACGTACGCTCACGAGGAGAGCGGCGGTGGTGGCATTTCCCTCTGTGGCACACTGAC
TTGGATTGGATTATTCTGATCGAGCAATTAGTCGTGCAGAGAGAACATGGGAGCACAGAGGCAGAACATTGGCTCATGGC
CACGACGGTGCATACGCTAGTTAATGCAAAAAGGAAGAGGAAAAAAGAGGACCATCGTGGCCGACGGCGCATGATCTTCT
TAGCCCCTTTGCAGTGGTGGCCACTGGGTCAATCCGACGGTGCCCGACGTGTCCTTCCTTGTCCTTTGCACACAAAAAGC
GATCGTTAGTTCCACCAATTATCCGCAACATTTGCCCCGGGTCCCGTTCTATGTTTCTTTTGTAACCGCCGATCCTTGTC
ATCTCTTATCGTCT-CGCCGCCTCGTCCTATAAATGCCA-TGATCCATGAAGAGAAGCATACAATTACAAACACACACCA
TCGATCGGAAACCATCGATCA--------AAAGCCTCTCTTGTGTTGTGTCGAGCACGTAGTGTACCGGCCTCCTCTCTA
GATCCATCCATGGCCGCTCGCATCGGCGCTGCTGTCCTCTGCGTGGTGTTGATCGTTAGCCTGGGGCTCATAGCCACGCC
GACCGAAGCTCGCGCCGTGGCGGGCGTCGTCTATGCTGCCGCGGTCGCCAATGCGGCCGGCGCCGCGGCCGCTACCAGCG
GCGCAGGCGTTCCTCCGGGGAGGTGGAA---CGCGAGGAGGCTGCAGGGAGACGCCGCTCACAAGCGGGAGGTGCCAGGC
GGCCCGGACCCGGAGCACCATCACTAGAGAGCCGGGAGCCATGCATGACGCGCCGACGTACGTAGGTAGGTAGAGCAGAT
CGATCTTCCACGTACGCACGGTGCCATGCGCGTGGCAGCCTCTATATATCAGGTGTTCCGGATGAGTTTGGAACGGTAAA
TTATTTGCATTTTGGTCGAAGGAGCTAACTAGCTAGCTGTGTGCTTAGAGGTACGTAGTACCATGGTATTCGT-TTGTGC
ATCCTACGT-----------------------------------------------------------------------
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>chr3D_335
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--------------AATATTACAGGAAAGGATCTTCATGAATTACCCGCGCTATTGCAACAACTTAAGTAAGTCTAGTTT
TATCGTCTCAACCGACACGGCGAGACCACATTG-TATCGTGGTTCCTCCATCCATCCATGTGCCGTCCACACAAATGAAA
CCTGTGTAGTTCTGGGCACAATGTACGTACGCTCACGACGAGAGCGGCGGTGGTGGCATTTCCCTCTGTGGCGCACTGAC
TTGGATTGGATTATTCTGATCGAGCAATTAGTCGTGAAGAGAGAACATGGGAGCACAGAAGCAGAACACTGGCTCATGGC
CACGACGGTGCGTACGCTAGTTAATGCAAAAAGGAAG----------AGGGTCATCGTGACCGACGGCGCATGATCTTCT
TAGCCCCTTTGCAGTGGTGGCCACTGGGTCAATCCAACGGTGCCCGACGTGTCCTTTCTTGTCCTTTCCACACAAAAAGC
GATCGCTGGTTCCACCAATTATCCGCAACATTTGCCCCGGGTCCCGTTCTGTGTTTCTTTTGTAACCGCCGATCCTTGTC
ATCTCTTATCGTCTCCGTCGCCGCCTCCTATAAATACCGCTGATCCAGGAAGAGATAGA------TACGAACACACACCA
TCGATCGGAAATCATCCATCACAGACAGGAAAACCTCTCTTCCGTCGCGTCGACCACGTAGTGTACCGTCCTCGTCTCTA
GATCCAAACATGGCCGCTCGCATCGGCGCTGCTGTCCTCTGCATGGTCTTGATCATCAGCGCGGGGCTCGTAGCCACGCC
GACCGAAGCTCGCGCCGTGGCACACGTCCTCTATGCTGCCGCGGTCACCAATGCGGTCGGCGCTG---------CCAGCG
GCGCCGGCGTTCGTCCGGGGAGGTGGAATACCGCGAGGAGGCTGCAAGGAGACGCCGCTCACAAGCGGGAGGTGCCGGGC
GGCCCGGACCCGGAGCACCATCACTAGAGAGCCGGGAGCCATGCATGACGCGCCGACGTAC----GTAGGTAGAGCAGAT
CGATCTTCCACGTACGCACGGTGTCATGCGCGTGGCAGCCTCTATATATCAGGTGTTTCGGATGAGTTTGGAAAGGTAAA
TTATTTGCATTT-GGTCGAAGGAGCTAGCGTGCTGGCTGTGTGCTTAGAGGTACTACGTGTAC--GTATTCGTTTTGTGC
ATGCTACGT-----------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---------------------------------------------S--------------------
---------------------------------S------------------S-----------S---------S-----
---------------------------S--------------------S----------S------S-------------
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------------------------------------S-------------------------------------------
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-----S-S-------------------------------------------S----------------------------
-------------------------S---------------------------S-S----------S-----S-------
------------------------------------------------------------------------------S-
------------------------------------S-----S-------------------------------------
---------------------S------------------------------------------------------S---
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-----------S--------------------------------------------------------------------
---------------------------------------------------S----------------------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_806
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------------------------------------------------------------------TGCACACAAAAAGC
GATCGG--------------------------------------------------------------------------
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>reverse_2280
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---------------------------------------AAACCAAGTCCACTGCGACA----------------
