>input_sequence_85827
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-------------------------------ATGTTGTCCTTGCTGCCGCGTGCCATGGCGAGCTCCACCAGCAGCGCCG
CGGCGTCGGCCGCCGTGCTCCCGGAGACGGACTCGGGGTACTTGGAGGCCGCACGCCCACTTAGGCAATTTCTCGCGATC
TTGCAGGCGATATCATTGGACACCACATCCCACAGGCCGTCGCTTGCCAGTATGAGGAACTCGTCTTTGTCCGTCCGGTC
CATGACGGTGACTTCTGGTTCCGCTATCACATATGGCTTCAGGTAA----------------------------------
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>chr3A_1_TraesCS3A01G237900
GAGAAGGACCATTTAACCTTGTCATAGGCTTTTTCAAAGTCAATTCTGAATATCACTCCATTCATGTTTTTTCGATGCAT
CTCATGGACGGTCTCATGCAGGACTACTATACCATCAAATATATTCCTTCCTTGCATGAACGCCGTTTGAGATGGCCAGA
CAACATGGTCAGCTACCGCGCTGAACATATTGTACATTTTTTTCATATATACCTTTTGATGTCTATTTCTTTAATACATA
TTGTACATTTTCCGTATACATGAGAAACATTTTGCTATACATGTTCAACATTTTTCAGTTTGATCAGGCGTCGAATAGAG
GGTCTCTTGATCGGTTGCATAAA--AAAAGATAAGTGTGATCAAGCGTCGAAGGCCCAGGCAAACGTTGCGGGTTCTTCT
TCCCCAGTTCCTCTCCATCTTGCTCTGATTCTGTAGCCACCAAATTGCATCGAACCACACTACCAGAGAAGCAAATTGAG
TCATGAATCGACCGACAGTGCTGACACACTGACACTGGTCCTGCCAATCCGCCTCAACCCTCAATCATGAACTGCTTGGC
ATGAAGATCCAAGTGCAGTCATCTCACAAACTATTGGATCACCCA-----------------------------------
-----------AGACTCCAACCGCATGGA---AAAACCAATGATCAAATCAGAACTGACGAAAGCAGCTTATGCTTCTTG
CCGCTTCGCCCCGAACGTCAGTCACCATATAT-----AGAAGAACTAAAGAACCAACGCAACGCAATACAACGG------
CAGCACGGCTACAAATAGCACACTCAACTCAACGGCAGCACGGCCACACCGTCCCTGAGCCCTCT-TAACTACAACCATC
CCAGCGAA--CAGCCGCAAATTCTTTCTT--TCTCTCTCTCTCTCTCTCTCTCTCGCCATGCTCGAATAATCTGACATCC
T-ATCCAGCCGGCCACCCTTACATTATCACTACTACCACCTGCGGTTT---TCTTTGATCACCGCCGCTGTCCTACTCTT
CAGTCGCCGCAACTCGACCACGACGACGCTGATGTTGTCCTTGCTGCCGCGTGCCATGGCGAGCTCCACCAGCAGCGCCG
CGGCGTCGGCCGCCGTGCTCCCGGAGACGGACTCGGGGTACTTGGAGGCCGCACGCCCACTTAGGCAATTTCTCGCGATC
TTGCAGGCGATATCATTGGACACCACATCCCACAGGCCGTCGCTTGCCAGTATGAGGAACTCGTCTTTGTCCGTCCGGTC
CATGACGGTGACTTCTGGTTCCGCTATCACATATGGCTTCAGGTAATAGTCTCCTGAGAT-GGCAACCATAAGGAATTCA
GAACAGTGCATAATTTGTGAGATCTATATATCTATTATGCATAATACTTGTCAAGTTGTAACTAGGCTACTGTCAGTTTT
CTTGCCAAAGCTACTACGTACCAATGTTAATATTTTCAAAACAACTATAGCACTGTCAATCTCAGCTACAAATATTTAAC
TTGTGCATATATGTCTGCCGACAAGAAATGTACAGATCAAGACGGTACAGCATCGTACCGATTGACCTCGAAGTTGCGAG
CACTCCCAGGATACGGTGTCCATTCCAGTTAATGACCTTGCCACCAGCTGCTTCTACTCTTTCCATTTCGTCAGGTCGGT
CTGGCTGTGTACCGTCAAAACAAGAGAAAGACATCAACGTTCCCAC--ACACTACTGTCCTACAAAGTTGGAATTGCAGA
AGAAGCGAAATTGTTCAAGAGGAAGTTATGCCAGCAAAGAGAAATTCCCTAATGTCTTTGCATGGACAAGCAATAGACAC
GATTAACATACAGAACCACCAGCTTGCATTGCAAAATGATGGATATGATGAGAAATCATGCTTTTGTATAAAGTTGCTAC
CGCGGAAAGAGCGCGTTGGACGAAAGTCAGCCGGATAACTAAAGGCAGAATGACACATCAACTATCTGCAT-TGAGGTTT
TGAAAACAAGATGTTCTAGTTGCGGATATATCAAGCCATATCAAGTGCATGCGACAAGGGACTTCCGCTCTTCAAGTATT
ATTGCCAGAGTACCAAACAAGACAAATTGTCTATCACCAACCTTAACCAGTTGAGTAGCATTGCATTGTGCTAGTACCTT
GCCACCGCTTAGATACAAATCTAAATAAAAATGATCAACGCGGCTACATATTTGTGTTTTTGTTGAGCAAGATAAGGCTT
CACAAGCTCTGCTTGGGGAAAAATATTCCTATTGTTTTGAAGCAGCACCTTGAATCAACTAGTTTCATTTATGAACAGAT
GCAAAATTGT
>chr3B_199
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--------------------------------------TTTTTGATATATACCTTTTGATGTCTATTTGTTTGATACATA
TTGTACATTTTTCGTATACACGAGAAACATTTTGCTATACACGTTTAACATTTTTCAATTTTATCATGCGCCGAATAGAA
GGTCTCTTGATCAGTTGCATAAG--AAAAGAAGA-TGTGATCAGGCGTCGAAGGCCCAGGCAAACGTTGGGGGTTCTTCT
TCCCCAATTCCTCTCCATCTTCCTCTGATTCTGTAGCCACCAAATTGCATCGAACCAGACTACCAGAGAACCAAATTGAG
TCAGGAATCGACCGAGAGTGCTAACACGCT------GGTCCTGCCACTCTGCCTCAACCCTCAATGATGAACTGCTTGGC
ATGAAGATCCAAGTGCAGTCATCTCACAAACTATTGTATCACCCAAGTTCATGGCAAACGTAATCCACGGACCACCTACA
AGGCGTCACTCAGACTCCAACCGCATCATGGGAAAACCAATGATCAAATCAGAACTGACGAAAGCAGCTTATGCTTCTTG
CCGCTTCGCCCGGAACGTCAGTCAGCATATATATAGAAGAAGAACTAAAGAACCAACGAAACGCAATACAACGG------
CAGCACGGCTACAAATAGCACACTCAACTCAACGGCAGCACGGCCACAACGTCCCTGAGCCCTCTCTAACTACAAGCATC
CCAGCGAACTCAGCCGCAAATTCTTTCTT--TCTCC----------CTCCCTGTCGCCATGCTCGAATAATGTGGCATCC
CCATCCAGACGCCCACTCCTATATTATCACTAGTGCTACCTGGTGCGGTTCTCTTTGATCACCGCCGCTGCCCTACTCTT
CAGTCGCCGCAACTCGACCACGACGACGCTGATGTTGTCCTTACTGCCGCGTGCGATGGCGAGCTCCACCAGCAGCGCTG
CGGCGTCGGCCGCGGTGCTCCCGGGGACGGACTCCGGGTACTTGGAGGCCGCGCGCCCACTTAGGCAATTTCTCGCGATC
TTGCAGGCAACGTCATTGGACACCACATCCCACAGGCCGTCGCTTGCTAGTATGAGGAACTCGTCTTTGTCCGTCCGGTC
CATGACGGTAACTTCTGGTTCCGCTATCACATATGGTTTCAGGTAATAGTCTCCTGAGGTGGGCAGCCATAAGGAATTCA
GAACAGTGCATAATTTGTGAGGTGTATATAAATC-TATGCATAATCCTTGTCAAGTTGTAACTAGGCTACTGGCAGTTTT
CTTACCAAAGCTACTGC----CAGTGTTCATATTTTCAAAACAAATATAGCACTGTCAATCTCAGCTAGAAATATTTAAC
TTGTGCATATATGTCTGCCGACAAGAAATGTACAGATCAAGACGATACAGCATCGTACCGATTGACCTAGAAGTTGCGAG
CACTCCCAGGATACGGTATCCATTCCAGTTAATGACCTTGCCACCAGCTGCTTCTACTCTTTCCATTTCGTCAGGTCGGT
CTGGCTGTGTACCGTCAAAACAAGAGAAAGACGTCAACGTTCCCAC--ACACCACTGTCCTACAAAGGTCGAATTGCAGA
AGAAGCGAAATTGTTCAAAAGGAAGTTATCCCAGCAAAGAGAAATTCCCTAATGTC-ATGCATGGACAGGCAATAGACAC
GACTAACATACAGAACCACCAGCTTGCAGTGCAAAATGATGGATATGATGAGAAATGGTGCTTTTGTATAAAGTTACTAC
CACGGGGAGAGCATGTTCGACAAAAGTCAGGCGGATAACTAAAGGCAGAATCACACATCAACTATCTGCATCTGAGGTTT
TGAAAACAAGATGTTCTAGTTGTGGGTATATCAAGCTATATCAAGTGT----GACAGGAGACTTCCGCTCTTCAAGTATT
ATTGCCAGAGTACCAAACAAGACAAATTGTCTATCACCAACCATAAGCAGTTGAGTAGCATTGCATTGTGCTAGTACCTT
GCCCCCGTTTAGATACAAATCTAAATAAAACTGATCAACGCAGCTACATATTTGTGTTTTTGTTGAGCAAGATAAGGCTT
CACAAGCTCTGCTTGGGAAAAAATATTCCTATTGTTTTGAAGCAGCACCTTGAATCAACTATTTTCATTTATGAACAGAT
GCAAAATT--
>chr3D_314
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-------------------------------------------------------------------------AATAGAA
GGTCTCTTGATCGGTTGCATAAAAAAAAAGACAA-TGTGATCAAGCGGCGAAGGCCCAGGCAAACGTTGGGGGTTCTTCT
TCCCCAATTCCTCTCCATCTTCTTCTGATTCTGTAGCCACCAAAATGCATCGAACCAGACTACCAGGGAACCAAATTGAG
TCATGAATCGACCGACAGTGCTAACACACT------GGTCCTGCCACTCTGCCTCAACCCTCGATCATGAACCGCTTGGC
ATGAAGATCCAGGTGCAGTCATCTCACAAACTATTAGATCACCCAAGTTCATGGCAAAGGTAATCCATGGACCACCTACA
AGACGTTACTCAGACTCCAACCGCATGGAA--AAACCCAATTATCAAATCAGAACTGACGAAAGCAGCTTATGCTTCTTG
CCGCTTCGCCCCGAACGTCGGTCACCATATAT-----AGAAGAACTAAAGAACCAACGCAACGCAATACAACGGCGGCAC
CAGCACGGCTACAAATAGCACACTCAACTCGACGGCAGCAAGGCCACAACGTCCCTGAGCCCTCT--AACTACAACCATC
CCAGCGAACTCAGCCGCAAATTCTTTCTTCCTCTCT----------CTCACTGGCGCCATGCTCGAATAATGTGACATCC
C-ATCCAGCCGGCCACTCCTATAGTGTCACTAGTGCCACCTGGTGCGGTTCTCTTTGATCACCGCCGCTGCCCTACTCTT
CAGTCGCCGCAACTCGACCACGACGACGCTGATGTTGTCCTTGCTGCCGCGTGCGATGGCGAGCTCCACCAGCAGCGCTG
CGGCGTCGGCCGCCGTGCTCCCGGAGACGGACTCCGGGTACTTGGAGGCCGCACGCCCACTTAGGCAATTCCTCGCGATC
TTGCAGGCAACGTCATTGGACACCACATCCCACAGGCCGTCGCTTGCTAGTATGAGGAACTCGTCTTTGTCCGTCCGGTC
CATGACGGTAACTTCTGGTTCCGCTATCACATATGGTTTCAGGTAATAGTCTCCTGAGATGGGCAGCCATAAGGAATTCA
GAACAGTGCATAATTCGTGAGGTGTATATAAATC-TATGCATAATCCTTGTCAAGTTGTAACTAGGCTACTGGCAGTTTT
CTTACCAAAGCTACTAC----CAATGTTAATATTTTCAAAACAACTATAGCACTGTCAATCTCAGCTAGAAATATTTAGC
TTGTGCGTATATGTCTGCCGACAACAAATGTACAGATCAAGACGGTACAGCATCGTACCGATTGACCTCGAAGTTGCGAG
CACTCCCAGGATACGGTATCCATTCCAGTTAATGACCTTGCCACCAGCTGCTTCTACTCTTTCCATTTCGTCAGGTCGGT
CTGGCTGTGTATCGTTAAAACAAGATAAAGACATCAACGTTCCCATATACACTACTGTCCTACAAAGGTGCAATTGCAGA
AGAAGCGAAATTGTTCAAAAGGAAGTTATCCCAGCAAACAGAAATTCCCTAATGTC-TTGCATGGACAAACAATAGACAC
GACTGACATACAGAACCACCAGCTTGCAGTGCAAAATGACGGATATGATGAGAAATGATGCTTTTGTATAAAGTTGCTAC
CACGGAAACAGCACGTTCGACGAAAGTCAGGCGGATAACTAAAGGCAGAATGACACATCAACTATCTGCATCTGAGGTTT
TGAAAACAAGATGTTCTAGTTGCGGATATATCAAGCCATATCAAGTGC----GACAGGAGACTTCCGCTCTTCAAGTATT
GTTGCCAGAGTACCAAACAAGACAAATTGTCTATCACCAACCTTAAGCAGTTGAGTAGCATTGCATTG-------ACCTT
GCCACCGTTTAGATACAAATCTAAATAAAACTGATCCACGCGGCTACATGTTTGTGTTTTTGTTGAGCAAGATAAGGCTT
CACAAGCTCTGCTTGGGGAAAAATATTCCTATTGTTTTGAAGCAGCACCTTGAATCAACCATTTTCATTTATGAACAGAT
GCAAAATTGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S------------------------S---S-------
-----------S--------S--------------------S---S-----------S---S----S---S--------S
-------------------------------S--S----------------------------------S----------
------S--------------S-----------------------------------S------------S---------
----------------------S-------SSSSSS----------S--S------------------------------
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------------------------------------------------S-------------------------------
------------------------------------SSSSSSSSSS---S--S------------------S--------
S---------------S-S--S----------S-S-------SS-SSS----------------------S---------
------------------------------------------------------S-----------------------S-
----------------------------------S---------------------------------------------
--------S-SS-----------------------------------S--------------------------------
---------S--------------------------S----------------------------S--------------
---------------------S-S------SS-SS----------S--------------------------S-------
---S-------------SSSS-----------------------------------------------S-----------
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-----------------S--------------------------------------------------------------
-------------------------------------------------------------------S------------
------------------S----------S--------------------------S-----------------------
--S-------------------------S---------------------------S-----------------------
-S----------S----S------------S-------------------------------------------------
------------------------------------------------SSSS----S-S---------------------
----------------------------------------------S---------------------------------
-------S----------------------S-------------------------------------------------
-------------------------------------------------------------S------------------
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>forward_91
-----------------------------------------------------------------------TCGATGCAT
CTCATGGACGG---------------------------------------------------------------------
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>reverse_1938
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-----------------GGACGAAAGTCAGCCGGATA-------------------------------------------
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