>input_sequence_85788
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-------------------------------------------------------------------------ATGGAAT
CCAAGGGTGGTAAAAAGTCCAGCAGTAGTCGTTCCTCCCTCATGTACGAAGCTCCCCTCGGCTACAGCATCGAGGACGTC
CGCCCTGCAGGCGGCATTGAGAAGTTCCGCTCCGCTGCCTACTCAAACGTA----------------------------T
GTATCCAATCAATTGAGCTCCTCCTTTCTTTTCGTTGCATATCTTGTTGATGATTAGATGCTCACAGTTTCTACTTCCAA
TTGCTTCTGTTTTGCAGTGCTCCAGGAAGCCATCCTGA------------------------------------------
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>chr6D_1_TraesCS6D01G202400
CAAATATTCCCAGGCG----AAGCCTCCTGGGCCAAGCAAACGCGAGGAGCCCTCCCAGCCAAGCA-TATCCGCGCCGCG
CCGCGAAGTCCGCACGCAAAAGCGCCAGAACGCGGTCCACCGTGACTCGGCACCCCCCAGCCGCGGAGCGCCCGTGAGCC
TCTATCCGATCGGTCCAGTGGACCGGGTCCTTTTTCAGGGCTCGCTCGGCCCCTTATAAATACGCTGCCCAGGCCGGGGT
GACTTTCCCATCTTGCAGGTCGCCTCATTTGTTTA-----TTTAGCACAAACGCAAACTCCGTTCGTTCCCCACC-ACCA
TCTCGTCCAAAACCTAGAAATTCGGAGTGAGATTGTGTTCGTCCGTTTGCTTTCGTTTTTTGGAGATCCGTGAGGAGG-G
GGAGAGACAGATCCGTCGCTTGCTCCCAGCTCGAGGTTTGTGACG---------AGCGGATTCGACGCGCGCCTCCGAAG
TTCTTCCTGGAACTGTTAAGATTTCTCTCCATCAGCTCATGTTGTTTCTATTCGATAGACATCTTCGATCCGCGGT-GAA
ATTCGTTTCCTGTACCTAG---GGATCATACTCCTTTTCGCCCCGGTGATG-GGCTGGATAGGAAAAGTAAATAAACGTC
GTCGTCTAGATTATCTGTAATTTCACAGACTTTGTGAAATATATGCAACACAGTCAGGAATTACCCGTGTTACTGTACGA
ATATGCTGTTCGGTACATCAATTTGTGGTAGATTTTGGCTGACCTGAATATTGCTTGATGTCAATTCGTTTCTATTTCAT
GATGCTTTCCTCCCTTTCTGTTATGC------CTGGAATAGTCATCTTCAAATCTGGTCGAATATCATGTACACTAATAA
TTCAGTAGAGATTAGGG-AAAATCCCTTTACTTTATGTACCTGGTGAAACGGGGAATCGCAGAAGGATATTAGTACTGCT
TTTTACCTCGCAATATGTTCTGTACTTCCATCGTTTCTAACCCAAATCAACCCACTCCAGAATTTGATGTGCTATGGAAT
CCAAGGGTGGTAAAAAGTCCAGCAGTAGTCGTTCCTCCCTCATGTACGAAGCTCCCCTCGGCTACAGCATCGAGGACGTC
CGCCCTGCAGGCGGCATTGAGAAGTTCCGCTCCGCTGCCTACTCAAACGTA----------------------------T
GTATCCAATCAATTGAGCTCCTCCTTTCTTTTCGTTGCATATCTTGTTGATGATTAGATGCTCACAGTTTCTACTTCCAA
TTGCTTCTGTTTTGCAGTGCTCCAGGAAGCCATCCTGATAATCCCTCTCGTG-CCCCATCCTAATTGCTTAGAATTCCCT
CCC-CTTTCAAT-------TCATCTTCCTAAATTTTCTCTTGCTAGCTGCTTTTCTCTGACCAGCAAAGCCT---TTTCT
CCCTCTACCAACCTT----------------------CTGAAACAATGGCCGT------CTCTGCGATTGGGTTCGAGGG
ATATGAGAAACGCCTGGAGATCACTTTCTCTGAAGCGCCAGTCTTCACTGACCCCAATGGCAGGGGATTGCGTGCGCTCT
CTCGTGCCCAGATCGACTCGGTCCTTGATCTTGCCAAGTGCACCATTGTATCTGAGCTCTCCAATGAGAAGTTTGACTCG
TATGTCCTTTCTGAATCAAGCCTCTTCGTGTACCCGTACAAGGTTGTGATCAAGACCTGCGGTACCACCAAGCTCCTGCT
GGCCATTCCAAGGGTTCTTGAGCTTGCTGAGGAGCTGTCCCTGCCACTTGCTGCTGTGAAGTACTCCCGTGGGACATTCA
TATTCCCTGAAGCACAGCCTTCTCCACACAAGAACTTCTCTGCCGAGGTTGCCTTCCTGAATGGCTTCTTTGGTGGACTC
AAGTCTGGCGGCAATGCCTATGTCATTGGTGATCCTGCAAAGCCAGGCCAGAAGTGGCATGTCTACTATGCCACCCAGCA
GCCTGAGCAGCCTGTGGTCAACCTTGAGATGTGCATGACTGGTCTGGACAAGAAGAAAGCTTCTATCTTCTTCAAGACCT
CTGATGATGGCCACACATCTTGTGCCAAGGAGATGACCAAGCTCTCTGGCATCTCTGAAATAATCCCGGAGATGGAGATC
TGCGACTTTGATTTCGAGCCATGTGGCTACTCCATGAACGCCATCCATGGCTCTGCTTTCTCCACCATTCATGTCACCCC
TGAGGACGGCTTCAGCTATGCTAGCTATGAGGTCATGGGGTTGGACCCTGCCTCCATGGCCTATGGTGACCTGGTCAAGA
GGGTGCTGAGATCCTTTGGCCCGTCTGAATTTTCTGTT
>chr6B_1
CAAATATTCCCAGGCG----AAGCCTCCTGGGCCAAGCAAACGCGAGGAGCCCTCCCAGCCAAGCATTATCCGCGCCGCG
CCGCGAAGTCCGCACGCAAAAGCGCCAGAACGCGGTGCACCGTGACTCGGCACCCGCCAGCCGCGGAGCGCCCGTGAGCC
TCTATCCGATCGGTCCAGTGGACCGGGTCCTTTCTCAGGGCTCGCTCGGCCCCTTATAAATAGGCTGCCCAGGCCGGGGT
GACTTTCCCATCTTGCAAGTCTCCTCAT----TTG-----TTTAGCACAAACGCAAACTCCGGCCGTTCCCCACCCACCA
TCTCGTCGAAAACCTAGAAATTCGGAGTGAGATTGTGTTCGTCCGTTTACTTTCGTTTCTTCGAGATCCGTGAGGAGC-G
GGAGAGACAGATCCGTCGCTTGCTACCTGTTCAAGGTCTGTGACGAGGAGG---AGCAGATTCGGCGCGTGCCTCCGAGG
TTCTTCCTGGAACTG-TAAGATTTCTCTCCATCAGCTCATGTTGTTTCTATTCGATAGACATCTTCGATCCGCGGTAGAA
ATTTGTTTCCTGTGCCTAGTA-GGATCATACTCCTTTTCGCCCCGGTGATG-GGTTGGATAGGAAAAGTAAATAAACATC
GTCGTCTAGATTATCTGTAATTTCACAGACTTTGTGAAATATATGCAACGGAGTCGGGAATTATCCGTGTAACTGTACGA
ATATGCTGTTCGGTACATCAATTTTTGGTAGATTTTGGCTTACCTGAATATTGCTTGATGTCAATTCGTTTCTATTTCAT
GGTGCTTTCCTCCCTTTCTGTTATGCTGCGGACTGGAATAGTCGTCTTCAAATCAGGTCGAATATCATGTACACTAATAA
TTCAGTAGTGATTAGCGAACTATTCCTCTACTTTATGTACCTGGTGAAAC-GGGAATCCCAGAAGGATATTAGTAGTACT
TTTTACCTCGCAATATGTTCTGTACTTC-ATCGTTTCTAACCCATATCAACCCACTGCAGAATTTGATGTGCTATGGAAT
CCAAGGGTGGTAAAAAGTCCAGCAGTAGTCGTTCCTCCCTCATGTACGAAGCTCCCCTCGGCTACAGCATTGAGGACGTC
CGCCCTGCAGGCGGCATTGAGAAGTTCCGCTCCGCTGCCTACTCAAACGTA----------------------------T
GTATCGAATCAATTGAGCTCCTCCTTTCTTTTCGTTGAATATCTTGTTGATGATTAGATGCTCACTGTTTCTACTTCCAA
TTGCTTCTGTTTTGCAGTGCTCGAGGAAGCCATCCTGATAATCCCTCTCGCG-TCCCATCCTAATTGCTTAGAATTCCCT
CCC-TTTTCAAT-------TCATCTTCCTAAAATTTCTCTGGCTAGCTGCTTTTCTCTGACCAGCAAAGCCT---TTTCT
CCCTCTACCAACCTT----------------------CTGAAACAATGGCCGG------CTCTGCGATTGGGTTCGAGGG
ATATGAGAAGCGCCTGGAGATCACTTTCTCTGAAGCGCCAGTCTTCACTGACCCCAATGGCAGGGGATTGCGTGCTCTCT
CTCGTGCCCAGATCGACTCGGTCCTTGATCTTGCCAAGTGCACCATTGTATCTGAGCTCTCCAATGAGAAGTTTGACTCG
TATGTCCTTTCTGAATCAAGCCTCTTTGTGTATCCGTACAAGGTTGTGATCAAGACCTGCGGTACCACCAAGCTCCTGCT
GGCCATTCCAAGGGTTCTTGAGCTTGCTGAGGAGCTGTCCCTGCCACTTGCTGCTGTGAAGTACTCCCGTGGGACGTTCA
TATTCCCTGAAGCACAGCCTTCTCCACACAAGAACTTCTCTGACGAGGTTGCCTTCCTGAATGGCTACTTTGGTGGACTC
AAGTCTGGCGGCAATGCCTATGTCATTGGTGATCCTGCAAAGCCAGGCCAGAAGTGGCATGTCTACTATGCCACCCAGCA
GCCTGAGCAGCCTGTGGTTAACCTTGAGATGTGCATGACTGGTCTGGACAAGAAGAAAGCTTCTGTCTTCTTCAAGACCT
CTGCTGATGGCCACACATCTTGCGCCAAGGAGATGACCAAGCTCTCTGGCATCTCTGACATAATCCCAGAGATGGAGATC
TGCGACTTTGATTTCGAGCCATGTGGCTACTCCATGAACGCCATCCATGGCTCTGCTTTCTCCACCATTCATGTCACCCC
CGAGGACGGCTTCAGCTATGCTAGCTATGAGGTCATGGGGTTGGACCCTGCCTCCGTGGCCTATGGTGACCTGGTCGAGA
GGGTGCTGAGATCCTTTGGCCCGTCTGAATTCTCTGTT
>chr6A_1
CAAATATTCCCAGGCGTCCGAAGCCTCCTGGGCCAAGCAAACGCGAGGAGCCCTCCCAGCCAAGCA-TATCCGCGCCGCG
CCGCGAGGTCCGCACGCAAAAGCGCCAGAACGCGGTCCACCGTGACTCGGCACCCC------------CGCCCGTGAGCC
TCTATCCGATCGGTCCAGTGGACCGGGTCCTTTCTCAGGGCTCGCTCGGCCCCTTATAAATACGCTGCCCAGGCAGGGGT
GACTTTCCCATCTTGCAAGTCGCCTCATTTGTTTATCAGTTTTAGCACAAACGCAAACTCCGTTCGTTCCCCACC-ACCA
TCTCGTCGAAAACCTAGAAATTCGGAGTGAGATTGTGTTCGTCCGTTCGCTTTCGTTTCTTCGAGATCTGTGAGGAGGGG
GGAGAGACAGATCCGTCGCTTGCTCCCTGTTCGAGGTTTGTGACGAGGACGAGCAGCAGATTCGACGCGCGCCTCCGAGG
TTCTTCCTGGAACTG-TAAGATTTCTCTCCATCAGCTCATGTTGTTTCTATTCGGTAGGCGTCTTTGATCCGTGGTAGAA
ATTTGTTTACTGTGCCTAGTAGGGATCATATTCCTTTTCGTCCCGTTAATTAGGCTGGATAGGAAAAGTAAATAAACGCC
GTCGTCTAGATTATCTGTAATTTCACAGACTTTGTGAAATATATGCAACACAGTCAGGAATTATCCGTGTTACTGTACGA
ATATGCTGTTCGGTACATCAATTTGTGGTAGATTTTGGCTGACCTGAATATTGCTTTATGTCAATTCGTTTCTATCTCAT
GATGTTTTCCTCCCTTTCTGTTATGC------CTGGAATCTTCATCTTCAAATCAGGTCGAATATCACCTACACTAATAA
TTCAGTAGAGATTAGTGAAATATTCCTCTACTTTATGTGCCTAGTGAAAC-TGGAATCCCAGAAGGATGTTAGTACTACT
TTCTACCTCGCAATATGTTATGTGCTTC-ATCGTTTCTAACCCATACCAACCCACTGCAGAATTTGATGTGCTATGGAAT
CCAAGGGTGGTAAAAAGTCCAGCAGTAGTCGTTCCTCCCTCATGTACGAAGCTCCCCTCGGCTACAGCATCGAGGACGTC
CGCCCTGCAGGAGGCATTGAGAAGTTCCGCTCCGCTGCCTACTCAAACGTA----------------------------T
GTATCCAATCAATTGAGTTCCTCCTTTCTTTTCTTTTTATATCTTGTTGATGATTAGATGCTCACAGTTTCTACTTCCAA
TTGCTTCTGTTTTGCAGTGCTCCAGGAAGCCATCCTGATAATCCCTCTCGCGCCCCCATCCTAATTGCTTAGAATTCCCT
TCTGCTTTCAAT-------TCATCTTCCTAAAATTTCTCTGGCTAGCTGCTTTTCTCTGACCAGCAAAGCCT---TTCCT
-CCTCTACCAACCTT----------------------CTCAAACAATGGCCGT------CTCTGCGATTGGGTTTGAGGG
ATATGAGAAGCGCCTGGAGATCACCTTCTCTGAAGCGCCAGTCTTCACTGACCCCAATGGCAGGGGATTGCGTGCTCTCT
CTCGTGCCCAGATCGACTCGGTTCTTGATCTTGCCAAGTGCACCATTGTATCTGAGCTCTCTAATGACAAGATTGACTCG
TATGTCCTCTCTGAATCAAGCCTCTTCATCTACCCGTACAAGGTTGTGATCAAGACCTGCGGTTACACCAAGCTCCTGCT
GGCCATTCCAAGGATTCTTGAGCTTGCTGAGGAGTTGTCCCTGCCACTTGCTGCTGTGAAGTACTCCCGTGGGACATTCA
TATTCCCTGAGGCACAGCCTTCTCCACACAAGAACTTCTCTGATGAGGTTGCCTTCCTGAATGGCTACTTTGGTGGACTC
AAGTCTGGCGGCAATGCCTATGTCATTGGTGATCCTGCAAAGCCAGGCCAGAAGTGGCATGTCTACTATGCCACCCAGCA
GCCTGAGCAGCCCATGGTCAACCTTGAGATGTGCATGACTGGTCTGGACAAGAAGAAAGCTTCTGTCTTCTTCAAGACCT
CTGCTGATGGCTACACATCTTGTGCCAAGGAGATGACCAAGCTCTCTGGCATCTCTGAAATAATCCCGGAGATGGAGATC
TGTGACTTTGATTTCGAGCCATGTGGCTACTCCATGAACGCCATCCATGGCTCTGCTTTCTCCACCATTCATGTCACTCC
TGAGGACGGCTTCAGCTATGCTAGCTATGAGGTCATGGGGTTGGACCCTGCCTCCATGGCCTATGGTGACCTGGTCAAGA
GGGTGCTGAGATCCTTTGGCCCGTCTGAATTCTCTGTT
>chr2B_994
ATGTGCTA------------------------------------------------------------------------
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-------------------------------------------------------------------------ATGGAGT
CAAAGGGTGGCAAAAAGTCTAGCAGTAGTAGT---TCCCTGATGTACGAAGCTCCCCTCGGCTACAGCATTGAAGACGTT
CGACCTGCTGGAGGCGCCAAGAAGTT---CTCTGCTGCATACTCGAACGTAAGGACGAGACCCAAGAGCCT---TCACTT
CTGTTCAGACATTTTATCTCCAGATTTGTTGCTAACCATGTGACATTTTTTTCATC------------------------
---------TTCTGCAGTGCGCGAAGAAGCCATCCTGATATCGTTTTTGGCA-TCCCCTTCCCGTAGTTTAGGATTTTTA
TGCAATTTTATTCTGACTCTTTTCTCCCACCAATCTCTCTGGCTTGCTGCTTCA--------------------------
---TCTGTTCCTCTCTGCTCTGCTTTCTGACTCAAAACTGCAACAATGGCTGCCCCGACCTCTGCGATCGGATTTGAGGG
CTACGAGAAGCGCCTTGAGATCACCTTCTCTGAGGCATCAATCTTTGCTGACCCTCATGGTCGTGGCCTGCGCGCCCTCT
CCAGGGCCCAGATTGACTCTGTTCTTGATCTTGCACGGTGCACCATTGTGTCCGAGCTCTCCAACAAGGACTTTGACTCG
TACGTGCTATCCGAGTCGAGCTTGTTTATCTACTCTCAGAAGATTGTGATCAAGACCTGTGGGACTACCATGCTCCTGCT
CACCATTCCAAGGATTCTCGAGCTGGCTGAAGAGCTGTGCATGCCGCTTGCTGCTGTGAAGTACTCCCGTGGGATGTTCA
TCTTCCCCGGTGCACAGCCTGCTCCCCACAGGAGCTTCTCTGAGGAGGTTGATGTCCTGAACCGCTACTTTGGCCACCTG
AAGTCTGGTGGCAATGCCTATGTGATTGGAGACCCAGCGAAGCCTGGCCAGAAGTGGCACATCTACTATGCCACCGAGCA
ACCTGAGCAGCCCATGGTCACCCTGGAGATGTGCATGACTGGGCTCGACAAGAAGAAGGCCTCTGTGTTCTTCAAGACTT
CTGCTGATGGCCATGTCTCCTGTGCTAAGGAGATGACCAAGCTCTCTGGTATCTCTGACATCATCCCTGAGATGGAGGTC
TGCGACTTCGACTTCGAGCCCTGCGGCTACTCCATGAACGCCATCAACGGATCTGCCTTCTCCACCATCCATGTGACCCC
CGAGGACGGCTTCAGTTACGCGAGCTACGAGGTCATGGGCATGGACGCTTCGGCCCTGGCCTATGGCGACATCGTCAAGA
GGGTCCTCCGGTGCTTTGGCCC----------------
>chr2D_994
ATGTGCTA------------------------------------------------------------------------
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-------------------------------------------------------------------------ATGGAGT
CAAAGGGTGGCAAAAAGTCTAGCAGTAGTAGT---TCCCTGATGTACGAAGCTCCCCTCGGCTACAGCATTGAAGACGTT
CGACCTGCTGGAGGCGCCAAGAAGTT---CTCTGCTGCATACTCGAACGTAAGGACAATTCTCAAACACGAGTCTCACTT
CTGTTTAGACATTTTATCTCCAGATTTGTTGCTAACCATGTGACATTT-TTTCATC------------------------
---------TCCTGCAGTGCGCGAAGAAGCCATCCTGATATCGTTTTTGGCA-TCCCCTTCCCGTAGTTTAGGATTTTTA
TGCAATTTTATTCTGACTCTTTTCTCCCACCAATCTCTCTGGCCTGCTTCACGATAATCGACCAGTTCTCTAGTCTTACT
CCCTCTGTTCCTCTCTGCTCTGCTTTCTGACTCAAA-CTGCAACAATGGCTGCCCCGACCTCTGCAATCGGGTTCGAGGG
CTACGAGAAGCGCCTCGAGATCACCTTCTCCGAGGCATCGATCTTTGCCGACCCTCATGGTCGTGGCCTGCGCGCCCTCT
CTAGGGCCCAGATTGACTCTGTTCTTGATCTTGCACGGTGCACCATTGTGTCCGAGCTCTCCAACAAGGACTTCGACTCG
TATGTGCTATCTGAGTCCAGCCTGTTCATCTATTCTCAGAAGATTGTGATCAAGACCTGTGGGACTACCATGCTCCTGCT
CACCATTCCTAGGATTCTTGAGCTTGCTGAAGAGCTGTGCATGCCGCTTGCTGCCGTCAAGTACTCTCGTGGGATGTTCA
TCTTCCCCGGCGCACAGCCTGCTCCCCACAGGAGCTTCTCTGAGGAGGTTGATGTCCTGAACCGCTACTTCGGCCACCTG
AAGTCTGGTGGCAATGCTTATGTGATCGGAGACCCAGCGAAGCCTGGCCAGAAGTGGCACATCTACTATGCCACCGAGCA
ACCTGAGCAGCCCATGGTCACCCTGGAGATGTGCATGACTGGGCTGGACAAGAAGAAGGCCTCTGTCTTCTTCAAGACTC
AAGCTGATGGCCACGTTTCCTGTGCCAAGGAGATGACCAAGCTCTCTGGAATCTCTGACATTATCCCTGAGATGGAGGTC
TGTGACTTCGACTTCGAGCCCTGCGGCTACTCCATGAACGCCATCAACGGATCTGCCGTCTCCACCATCCATGTGACCCC
CGAGGACGGCTTCAGCTACGCGAGCTACGAGGTCATGGGCATGGACGCCTCCGCCCTGGCCTACGGCGACATCGTCAAGA
GGGTCCTCCGGTGCTTTGGCCCTTCAGAGTTCTCTGT-
>SNPs
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---------------------------------S----------------------------------------------
-----------------S--------------------------------------------------------------
-------S--------------------------------------------------S--S------------------
---------------------------S-S---------------------------S--------------------S-
---------------S----------------------------------------------------------------
---S---------S------------------------------------------------------------------
---------------------------------------------------------------S----------------
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------------------------------------------------------S-------------------------
---------------S----S--S---S----------------------S-------S------------------S--
----------------------------S---------------S-----------S-----------------------
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-------------------------------------S------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------S-------S---------------------------------------
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---------S-----------------------------------------------------------------S----
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------------------------------------------S-----------------------S-------------
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----------------------------------------------------------------S---------------
---S----------------------------------------------------------------------------
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-------------------------------S------
>forward_564
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----------------------------------------------------------------TTCGATCCGCGGTGAA
ATTC----------------------------------------------------------------------------
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>reverse_1883
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------------------------------------------CCGAGGTTGCCTTCCTGAAT------------------
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