>input_sequence_85773
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------------------------------------ATGAGGTCCAGTTGGTTACCCACTCCGGCGTCCGTCTCCCTGCT
CATCATAGCGGCACTCCTTTGCGCTGCCCCTGTGACCATCGACGCCGCGAGACAGGTCCCTGTCCCGGATGGCGGCGGCC
TTCTCAATAGCCACGACAACGCCGCCGCGTACACGACGCTGCACGAAGGGACGAGGTCCAAGACGACGTCGACGGTCATG
GCGTGGACGGCGCAGCTACCGGCGGGGCCAAGCCCCAGGGGCCCTGGTCACTAG--------------------------
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>chr6B_1_TraesCS6B01G246900
CTTTGGGTATCGCGCAAGCTACAGCCTGCTGATTTACAGCGGGGGTGTAGGGCGGTTTGGC-----TGGGCATCCTCCTG
CTCTATGGCCAGCATGTGCACGGGTGCGTGCAGGGTCAACCGCGAACTGTCCCTTGGTACTGCAGACTGCAGAGCCATGC
ATGAATAAAGCAAGGTTAGTTAATTAATTCCGGCATTACCATGTCGCGGCACAACCTGCGTGATTTGCGTCGGCAGAAAA
TGG----CCTCACAAAGCTCAGATGTTCGCAGGCTTCGATCGGCGATGCGGTCCGAAGAGAGCAGTTGCAAACTGGCGAC
AAAATCCAAGCGCATCTCATCCGTGGCATACCTTCGATCCCCGTGCCGTAGCTCACAAGCATGCATGCATGCAC------
--GTGATTGATTAATCTGTACGTAATACT----AGTAGGTGTTGAAATCCCGGTTACTCTACAGTCTACACAGTAGCTTA
GGGTGCT-------------------------------------------------------------------------
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------------------------------------------TAATTAGCTCTCACTTGGCTTGCTGGATCTGTTGATGC
TGAACTCGATAGACCGGACTTTTTTTTTCCGAAACAGTGATAGACCGGACTTGGCTTGCTGGAAGTCAGAGTGCTGCCTG
ACAGTTTTCTCGGTAACATGACGGTAAGTTGAATATGTCATGTCACCATGTGCCATATATATGACCCTACTACTCGATCA
AGTCCAAGATGCATGCAAAAGACAAGCGTAGACTGTGTACAAGATAGTGGCCTACTGGCCTCCTGGTTTT-CTCGCAGAA
ATTAAAG----GCATGCAAGCTCGCGCGGATCACGCAAGGAACCGTTGTACACACTACAGACAAACATGTCCGGCCTGCT
AGCTAGAAGTTTTCTCTAGTCCAGGAACAATGAAACCCGATCTAGAGCCTTGGGTTTATATAAC---CACGCGCGGC---
---CGGCATTCCGCTGAGCCTGTAACTCCCTCTCCAGTGCGCTCGCTGAGCTACTTGTGCATGCTGCTAGGC------TA
CGTCCTACTTTCACCATTGATCTCAACAACTCACCTATGAGGTCCAGTTGGTTACCCACTCCGGCGTCCGTCTCCCTGCT
CATCATAGCGGCACTCCTTTGCGCTGCCCCTGTGACCATCGACGCCGCGAGACAGGTCCCTGTCCCGGATGGCGGCGGCC
TTCTCAATAGCCACGACAACGCCGCCGCGTACACGACGCTGCACGAAGGGACGAGGTCCAAGACGACGTCGACGGTCATG
GCGTGGACGGCGCAGCTACCGGCGGGGCCAAGCCCCAGGGGCCCTGGTCACTAGAGCGACCTACCTAGCTAGCTTAGCTA
GATAT----ATGGCAGCAGAGCAGTAGTAGCATCGACGCTGCCCTGCCCT-----GATAAACTAAGGCCAAGAGCTCCCT
TTGCGCGGCGGTTGTTTTTCCTTGATCCGTGCATTTGGAAGAAGCTCGGTCTC--TTTTTTCTCCTCTAGT----CGCTT
TGGTATTTTGGTAGTCTTCCCTCTTGATCTATGTTTTGGTACTCTTCCCTCTTGATCTATGTTTTAGTATTTTGGTAGCT
TGATCTATGCTTTGCGGATAGTATGGACAAGTATGATCA-----ACTAATCTGCCGGGTCAAGGTTGTATTCCTTGTCCG
GTCTTGTATAGTTTGTTAGAGCATCTCCAACAGCCACGCTAAATAAGCGTCGCGCCGTAAATTTGCCCTTTGTAGCATGC
GCGTAATTTGTAGAGGGGCTCCAATGAACGCGCAAAGCGCGCGCGGTA-ATATAGAGTTGGGCGCGCGGTCCGAATCGCC
ATCACGCGGTGTGTATTTGGTGCACCCGCTTCCGCACGCGACACACTCAAGCGCTCGCGCCGCACTCGCTCCGCCGCGCT
ACCTTCGCCCCGCACACACCATCGCCGGCGAATTGACCCGATGGACGCCTGCGCCAGCACCCCCCCTCACCCCTTCCTAC
AGTCGCGACCCCTCCACCGCCGCCGCCGCC------GCAAACCCTAGCGCGGGGAGCTTTGGCTTCGCTTCCGCCGGAGC
TCCTCCGAGCACCGGCATCGCGCGCGGCCTCTTCATGCCGCCGCGGATGACCTCGGTGGCAGGTGGCGTCGCGCCGGTGC
CCGCCATGAAGCCGCGCGCCCGCCGGCGTCCG------------------------------------------------
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---------------------------------------------------------------------------ACACC
TTCCGAGCTTCACGTGATGAGGATGCGGCACGCGGCAATGAAGAGGAGGAGGAAGAATCGTCTTCGGAGGAGTCGGATGA
ATCGGAGGAAGATGAGGATGAAGACGAGGACGAGCTTGGTTA-TTGATGTGTCTTTCGTTTGTGTCATGAACTTGGTCTG
CATTT
>chr6D_1
CTTTGGGCTTCGCGCAAGCT---GCCTGCTGATTTACAGTGGGAGTGTAGGGCGGTTTGGCTGGGATGGGCATCCTCCCG
CTCTATGGCCAGCATGTGCACGGGTGCGTGCAGGGTCAACCGCGAACTGTCCCTTGGT---GCAGACTGCAGAGCCACAC
ATGAATAAAGCAAGGTTAGTTAATTAATTCCGGCATTACCATGTCGCGGCACAACCTGCGTGATTTGCGCCGGCAGAAAA
TGG----CCTCACAAAGCTCCGATG---------TTCGATCGGCGATGCGGTACGAACAGAGCAGTTGCAAACTGGCGAC
AAAATCCAAGCGCATCTCCTCCGTGGCATACCTTCGATCCCCGTGCCATAGCTCACATGCATGCATGCATGCATGTGAAT
ATGTGATTGATTAATCTGTACGTAATAGTACTAAGTAGGTGTTGAAATCCCGGTTACTCTACAGTCTACGCAGTAGCTTA
GGGTGCT-------------------------------------------------------------------------
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------------------------------------------TAATTAGCTCT-------------------GTTGATGC
TGAACTGGAG-------------------------------AGACCGGACTTGGCTTGCTGGAAGTCAGAGTGCTGCCTG
ACAGTTTTCTCGGTAACATGACAGTAGGTTGAATATGTCATGTCACCATGTGCCATATATATGACCCTACTAATAC-TCG
AGTCCAAGATGCATGCAGAAGACAAGCGTAGACCGTGTACAAGTTAGTGGCCTACTGGCCTCCTGTTTTTTCTCACTGCA
ATTAAAGGCATCCATGCAAGCTCGCATGGATCGCGCAAGGAACCGTTCTACACACTACAGACAAACATGTCCGGCCTGCT
AGCTAGAGGTTATCTCTAGTCCAGGAACAGTGAAACCCGGTCTAGCGCCTTGGGTTTATATAAC---CAACCACACGCGG
CAACGGCAATCCGCTGAGCCTGTAACTACCACTCGAGCGCACTCGCTGAGCTACTTGTGCATGCTGCTAGGCATAGGCTA
CGTCCAACTCTCTCCATTGATCCCAACAACTTGCCTATGAGGTCCAGGCGGTCAGCCACTCCGGCGTGCATCTCCCTGCT
CATCATAGCGGCACTCCTTTGCGCTGCCCCTGTGGCCATCGACGCTGCGAGACAGGTCCCGGTCCCGGATGGCGGCGGCC
TTCTCAACAGCCACGACACCGCCGCCGCGTACACGACGCTGCACCAAGGGACGAGGTCCAAGACGACGTCGACGGTCATG
GCGTGGACGGCGCAGCTGCCGGCGGGGCCGAGCCCCAGGGGCCCTGGTCACTAGAGCGACCTACCTACCTAGCTTAGCTA
GATATATGCATGGCAGCAGAGCAGTAATAGCATCGAGGCTGCCCTGCCCT-----AATAAACTAAGGCCAAGAGCTCCCT
TTGCGCGGCGGTTGTTTTTCCTTGATCCGTGCATTTGGAAGAAGCTCGGTCTC--TTTTTTCTCCTCTAGTTGATCGCTT
TGGTATTTTGGTGGTCTTCCCTCTCGATCTATGTTTTGGTAGTCTTCCCTCTTGATCTATGTTTTGGTATTTTGGTAGCT
TGATCTATGTTTTGCGGATAGTATGGACAAGTATGATTACGATAGCTAATCTGCCAGGT-AAGGTTGTATTCGTTGCCCT
GTGTTGTATAGTTTGTTAGAGCAT--------------------------------------------------------
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>chr6A_35
----------------------------------TACAGTGGGGGTGTAGGGCGGTTTGGCTGGGCTGGGCATCCTCCTG
CTCTATGGCCAGCATGTGCACGGGTGCGTGCAGGGTCAACCGCGAACTGTCCCTTGGT---GCAGACTGCAGAGCCACAC
ATGAATAAAGCAAGGTTAGTTAATTAATTCCGGCATTACCATGTCGCGCCACAACCTGCGTGATTTGCGCCGGCAGAAAA
TGGACTCCCTCACAAAGCTCCGATG---------TTCGATCGGCGATGCGGTACGAACAGAGCAGTTGCAAACTGGCGAC
AAAATCCAAGCGCATCTCCTCCATGGCATACCTTGGATCCCCGTGCCGTAGCTCACATGCATGCATGCATGCATGTGAC-
-------TGATTAATCTGTACGTAATAGTACTAAGTAGGTGTTGAAATCCCGGTTACTCTACAGTCTACGCAGTAGCTTA
GGGTGCTTAAGGGCATGTACAGTGGTTGATAAGATAGTCTTATTTTAAATTTTGCATGTAATTTAGAGATGACAAAAAAA
GAATGTCTACAATGGGTCATCTCTTAGTCTTATCTTAAAAACTAGCTATTCCTAAAAACATGGTGAGACAAATTGTGCTA
AGAGATCATCTCTTGCCTTCTCTTAAATAAGAGAAGACAAGTCTTTTCTTATGAGTTCTCTCTCCTCCACCTCATCATTT
ATCTTATGTGGCACTCCTAAGATAGCACCATTGTACATGCCCTAATTAGCTCT-------------------GTTGATGC
TGAACTGGAG-------------------------------AGACCGGACTTGGCTTGCTGGAAGTCAGAGTGCTGCCTG
ACAGTTTTCTCGGTAACATGACAGTATGTTGAATATGTCATGTCACCATGTGCCATATATATGACCCTACTACTCGATCA
AGTCCAAGATGCATGCAGAAGACAAGCGTGGACCGTGTACAAGTTAGTGGCCTACTGGCCTCCTGGTTTTTCTCACTGCA
ATTAAAGGCATGCATGCAAGCTCGCATGGATCGCGCAAGGAACCGTTGTACACACTAGAGACAAACATGTCCGGCCTGCT
AGCTAGAGGTTTTCTCTAGTCCAGGAACAGCGAAACCCGGTCCAGCGCCTTGGGTTTATATATATGGCACGCGCGGCCGG
CAACGGCAATCCGCTGAGCCTGTAACTACCACTCGAGCGCACTCGCTGAGCTACTTGTGCATGCTGCTAGGC------TA
CGTCCCACTTTCACCATTGATCCCAACAACTCACCTATGAGGTCCAGGCGGTTAGCCACTCCGGCGTGCATCTCCCTGCT
CATCATAGCGGCACTCCTTTGCGCTGCCCCTGTGGCCATCGACGCCGCGAGACAGGTCCCGATCCCGGATGGCGGCGGCC
TTCTGAACAGCCACGACACCGCCGCCGCCTACACGACGCTGCACGAAGGGACGAGGTCCAAGACGGCGTCAACGGTCATG
GCGTGGACGGCGCAGCTACCGGCGGGGCCAAGCCCCAGGGGCCCTGGTCACTAGAGCGACCTACCTAGCT----TAGCTA
GATAT----ATGGCAGCAGATCAGTAGTAGCATCGAGGCTGCCCTGCCCTGCCCTGATAAACCAAGGCCAAGAGCTCCCT
TTGCGCGGCGGTTGTTTTTCCTTGATCCGTGCATTTGGAAGAAGTTCGGTCTCTTTTTTTTCTCCTCTAGT----CGCTT
TGGTATTTTGGTAGTCTTCCCTCTTGATCTATGTTTCGGTAGTCTTCCCTCTTGATCTATGTTTTGGTATTTTGGTAGCT
TGATCTATGTTTTGCGGATAGTATGGACAAGTATGATCACGATAACTAATCTGCCGGGTCAAGGTTGTATTCGTTGCCCA
GTGTTGTATAGTTTGTTAG-------------------------------------------------------------
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>chr2D_1595
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----------GTTTCTAAGAGTATGTCCAACAGCCGTGCTAAATAAGTGCCGCGCCGCAAATTTGCCCTTTTTAGCGTGC
GCGCAATCAGTAGAGGGGCTCCAGCGGACGCGCAATAAGCGCGCGCGGCATATAGAGTTGGGCGTGCGGTCCGAATCGCC
ATCACGTGCTGTGTATTTGGTGCGCCCGCTTCCGCGCGCGGCACACTCGAGCGCTCACGCCGCACTCTCTCCGCCGCGCC
ACCTTCGCCCCGCACGCGCTGCCGCCGGCAAATTGACCCGATGGACGCCCGCGCCGGCACCCCCCTCA--CCCTTCCTAC
AGTCGCGAGCTGTCCACCGCCGCAGCCGCCGCCGCTGCAAACCCTAGCACGGGGAGCTTTGGCTTCACCTCCGCCGGAGC
TCCTCCGAGCACCGGCATCGCGCGCGGCCTCTTCATGCCGCCGCGGATGACCTCGACGGCGGGTGGCGTCGCGCCGGCGC
CCACCGTGAAGCCACGTGCCCCCTGTCGAAGCTCCCAAATGCGGCGCGACCGAAGAAGGGCAAGACATCCGCGAAGAAGA
ACAAGGCGGCGGACGGCTCCGGCTCCTCGAAGACGTCGAGGAAGAAGCTTGCAGGGTGTGCGACGGGCGCGGCGGCTACC
GAAGCGTCGGCGAGCACAATGTGTTCGAGGAAAGGCCCCAAAGGTATAAAATTCCGCCAACTTTTTTGTTTTTGTTATTT
TTTGAATGCATACATATAGATAGCTTATTTGCATTGTTCTATATACTTTGTAGTGTCAACGATGAGGCATACATGTCAAC
TATGGGTGTTGGCTCCAACAATTCGCATTGGTCTCAAACCAATGACATGCATTTCGAAGTGGACGAGGATGGTGAGGGCA
TTGTCGACGCACCGAAAGGAAGAGGAGGCAACTACACCAACGAAGAAGACGTCTTGCTATGCAAAACTTGGTTGCAAGTG
TCGAGGGATCCGTCCGTTGGAGGTGATCAAAGTAGAGATGCTTATTGGAACCGGATGAAGGAACACTTTGATCTACGCAA
TGAGAGTGGAATTGACCGCTCCGATCGATCTCTTCGCTCCCGGTGGTCGACAATCAACAAGGATTGTCAAAAGTGGGCGG
CCGCACAAAAGGCGGTTGACAAGTTGAACTCAAGTGGCACTAATGATGAAGATAGGGTAAGTGCCATTTCATCCATGTTC
ATCATGCTTGTTGTTGGTGTTTGTAGTGCTAACTTGTTTTGTTTTCATGTAGTTAAATATTGCACAAAACTTGTTCAAAG
GAGAGGAGAAGAGGACCAAGAAGGAGAAGATCAAGAAAGGAAGGCCATTTACCTTGCCTCATTGCTATGAAGCATTGAAG
GATGATGAGAAATGGAAGAAGCGTGATGATATGGATGATTTGGATTTAAGCAACAAACGCAAGCGAACAATTGATTTGGA
TGATGATGAGGAGGAGGCATCAAGTGATGATGGCAAGAGAAGCCCCACACCAAACTCGGTTTCATACTCGAAGCCAAAAC
GACCGGATGGGACCAAGAAATACGCAAAAGAAAAGAAGAAGAAGAAAGGAGATGATGAGCTAAAAAATGCTATGGAAGCT
ATTGTGAAGGCAAGAAAAGAAGCCAACGAGGTGAGGAAGATGGCAAGGAACCAAGATGCCGCGGCTGAGATGCCGCGGCT
GAGGAGAGGAGGGTGGCGGCCGAGGAGAGGAAGGTGACATTGGAGGAGAGGAAGGTGGGCATGGAGAAGCGATCTAGATT
ATTGGATTGAGAGAAGCACTTGTTCTTCTTGGACACATCTATCCTCAATGAGGCGCAAAAGGAGTATGTCAATCTTGCCC
GTGAAGAAGTCTAGATCCAAAAAAGAGCAATGATTCGCGCCATGGGTGGCGGTGGCCTTGGCGGCATGGGAGGCATGGGT
GGCTTCGGAGCTACCATGGGCGGCATGGCTGCCATGGGTGGCTTTGGAGCTACCATGGAGACCATGGGAGGCATGGGTGG
CTTCGGAGCACCTCCGGGAGGCATGGCCGGCATGGGAGGCATGAGTTTTGCGTCTCTCATGGGAGGCATGGGTGCACCTC
CGGGTGCCATGGGCAGAATGTCTTCCGGTGTGCCTCACACACCTTCGCATGAAGATGCCGTTGAACATCTTGCCAACATC
TTCAGAGCTTCACGTGATGAGGATGCGGCGCGCGGCAATGAAGAGGAGGAGGAAGAATCGTCTTCGGAGGAGTCAGATGA
ATCGGAGGAAGATGAGGATGAAGACGAGGACGAGGCTTGATTGTTGATGTGCCTTTCGTTTGTGTCATGAACTTGGTTTG
CATTT
>SNPs
-------SS-----------SSS----------------S----------------------------------------
----------------------------------------------------------SSS----------------SS-
---------------------------------------------------------------------S----------
--------------------S----SSSSSSSSS------------------S----S----------------------
------------------S--------------------------------------S---------------S------
---------------------------S-----------------------------------------S----------
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-----------------------------------------------------SSSSSSSSSSSSSSSSSSS--------
------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
----------------------S---S-----------------------------------------------------
-----------------S---------------S---------S------------------------------S-S-S-
-------------------------SS-----S-----------------------------------------------
-------S---------------------S---------S-----S----------------------------------
--------S------------------S--S---S--S--S---------------------------------------
-----S----------------S------------------------SS-----S------------S-S----------
----------------------------------S-------------------------S-------------------
-------S----------S-------------------------------------------------------------
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------------------------------------S-------------------------------------------
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-----------------------------------------S-----------------------S--------------
---------S--------------------------------------------------------------S---S--S
--S---------------------S----------SS----------S-S-------S-------------S----S---
---S---SS--------------SS-S--------SSS-------SSS----------------S---------------
------S-S--------------S-----------S----S-------S-------S----------S-----------S
---------------S-S-SSS-------S-------------------S-----S---------SSSSS----------
--------S-SS-----------S------------------------S-----------------S-S-----------
-------------------------------------------------------SS---S----------------S--
--S--S-------S--S----S-S-S--SSSS------------------------------------------------
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------------------------------------------------------------------------------S-
---S-------------------------S--------------------------------------------S-----
----------------------------------SS-S-S-S---------S-------------------------S--
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>forward_789
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-------------------------------------------------CTCTCACTTGGCTTGCTGGA-----------
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>reverse_4079
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------------------------------------------------------------------------------CC
TTCCGAGCTTCACGTGAT--------------------------------------------------------------
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