>input_sequence_85765
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------------------------------------------------------------------ATGATGGAGGCGCC
GTCG---CTGGAGCACCGGGTGCCGGCGGAGGAGCGGCACCGGATCGAGCGGGTGGCGCGGTTCGTGGCGCGGGACCGGG
ACGGGGACCTGGCGGAGGCGCTGCTGCTGCGGCTGCTGCGGATCACGCGCAACGGCCGGCGATGGGGGTTCCTGGCCAAC
GACCACCCGCTCCACCCCTACTACCTCCAGCAGAAGGTCTCCGAGCAGTGCCGCATCCTCCGCCCCCGCCACGCCGCCGA
CCGCTGA-------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G343900
AAACTGCTTAGTTCCTCTGAATTACCATATAAACCATCCCTAAATAAAATTGTACAGCTCATAGCTGAGAGAAAAGTCAA
GCATTCAGCATCTAACGAAATAACTTTCCTCCGGATCGCAGGCGAAGATGGAAAGAAAGCGAGCTCGCGAGCACGACAGG
CTTGCGAGGAAGCTGGCATCAGCGAGGAGCAGAGCAGAGGCGAAGAGGGAGGCCGCGGAGGCGAGGAGGAGCCAAGAAGC
GGAGCGAACGGATGAGCAGGCGGCGCAGATCCGTAAGACCGGGCACATACCTTCCTCAATCTCCTGCT------GGTGCT
GGTGCCTATGATAAATCCCATGCCTCTGAGCATC--GTAGAA-----ATGTTTCTCCTGAAAACGACCATTGTAAAAATG
CTACTGGCTCATCTTTTACCAGCAAGGAATGCAAAGTGTGTCGCCGTTTT---CGTCCTCTCGA----ATTTGCCATATC
GGATAATATC------------TGCGTATTCATCATTTACATCGCGAATTAAAACCTTGCCACGACCGTCTTTGGCGAGG
AAATTCGACATTATTATATTTATTATAGCCGTAGGAAATCCAGTTTTAGTTAACACGGA---TA-------AAAATAATA
AAAAATCCTGCATATAAAAAGGAAAATGAAA----TCCCTTGCATAATGGT---------AAAAATTGTACTACCAGCAC
GTTAATGTAGGGA--AAAAAATAGCACGGCGCCATTAATTTCCTAGGCGGATCTGG------ATAATAATGGTGGAATTA
GCGAGCGGTTCGTGATGCCACGTGCGT---------CCACAGCGGCCGTGCGATGCCGGATCCAACGGCTGGGAATCGCT
CCGCGCCAAAATAGGATA------TATCC---AAAAACATTCCCGTTCCGGCGTCGTCCACACGGGGTGTCCTGATCCGA
TCCAAAGTGTCCTGTATAAATGAAACGGCTACGAGAAATCTCTCG----------CTGACTCTGTCTCTCGCCA------
CGA----TCCAAACCCTAACGCGAACGACCGGATCGACAGATCGAGCGAG-----GCAGGGTCGGGATGATGGAGGCGCC
GTCG---CTGGAGCACCGGGTGCCGGCGGAGGAGCGGCACCGGATCGAGCGGGTGGCGCGGTTCGTGGCGCGGGACCGGG
ACGGGGACCTGGCGGAGGCGCTGCTGCTGCGGCTGCTGCGGATCACGCGCAACGGCCGGCGATGGGGGTTCCTGGCCAAC
GACCACCCGCTCCACCCCTACTACCTCCAGCAGAAGGTCTCCGAGCAGTGCCGCATCCTCCGCCCCCGCCACGCCGCCGA
CCGCTGATCCTCCGCCCTCCTCCGTGCCGGGCGATCGCTTGGCATGCCGGCGCGCGCATGCATCTTGCCGTCTCTGCTCT
GTTGTTAATTTTTTCTTTCTTGTTTCGTCGTCGCATCACATATTTTTTTTTGTAGGATCGTA----GTGTGTG-------
ATTAATGACGTGCCGTTGTTGTGAG-------------ATCGGCTGAGGATTCAAAGGAGGCAGCCGC----GGATTCTA
ATAAGAAATAAGAAA-----------------------------------CTGTAATAGGCCAGATGATTTCTTTTTTGG
ATAAGATTGATGATTGATTATGTGCTTAA----CTGTTTCCGAAAAAAAAG-TGTGCTAACTTCGACTGG----------
----------------CTCTCTATGCTGGGAAAGGCTGGGATAATGTCAGTGGCCTGGGCTCCAAGCTTCACTGGGGTTT
GCCTGAGCCCAGTTTCAATTTTTTTTTAA----TTTTTTTTGAGATGCTGAATTCTGTTTCTGCCTTTGCTAGTCCCCTT
TTTGTCTTTGCAAATTGGATTAACATGACATAATGCGGTTTAATTTTTGTGTGTTCAATTATTATGTTCTATAATACCTC
CAACATTGCTTGGTTGAGATGCATTTGCAGTCTTACTGACCAACATGCCG--TACGGCTTCGCGGCG--GTTCCGTCTTC
CATCCGAAGGAGAAACCACCACGAACAGAAGTTCCCCTGCATTCAGGCAACTGATAAGTTTTTCAAGCAGACTGGACAGA
CAGATCATTACAGGAGAGCAAGGCACCATCCGACCACCACTGTCAAATTACAGGACAGACAGAACACACTGCTACCACCA
CCAGGCACCAGAACTTACTCAACAGCGGCAAAACGATTGCACGACTACCAAAGGCCAGTAGATAA---------------
-----------TTGACGAAATTCGAGGGTGATGCTACATTTGCTGACAAGATTGTATTCAGCAGCGGTGCACGAATCTTC
CAAAATTTTGATACCGTAGAACAATTCATGACGAAGACCTGCTGGAATGGGCACCTGATCGTTGATCCTGCGCTTGACGG
TGGCAATGGTGTCGA
>chr4B_65
----------------------------------------------------------------CTGAGAGAAAAGTCAA
GCGTTCAGCATCTAAAGAAATCACTTTCCTCTGAATCGCAGGCGAAGATGGAAAGAAAGCGAGCTCACGAGCACGACAGG
CTTGCTCGGAAGCTGGCGTCAGCGAGGCGCAGAGCAGAGGCGAAGAGGGAGGCCGCGGAGGCGAGGAGGAGCCAAGAAGC
GGAGCGAACGGATGAGCAGGCGGCGCAGATCCGTAAGACCGGGCACATACCTTCCTCATTCTCTTGCTGGTGCTGGTGCT
GGTGCCTATGATAAATCTCATGCCTCCGAGCATATGGTAGAA-----ATGTTTCTCCTGAAAACGCCCATTGTAAAAATG
CTACTGGCTCATCTTTTACCAGCAAGGAATGCAAAGTGTGTCGCCGTTTT---CGTCCTCTCGA----ATTTGCCAGATC
GGATAATATC------------TGCCTCTTCATCATTTACATCGCGAATTAAAACCTTGCCATGACCGCCTTTCGCGAGG
AAAATCGACATTATAT------TTATAGCCATTGGAAATCCAGTTTTAATTAAGAAGGATAGTA-------AAAATAATA
TACAATCCTTCGTATAAAAAGGAAAAATGATATCCCATTACAGTACTACTTTTTTTGATGAAAAAATGTACTACTAGTAC
ATTAATAATGTAGGGAAAAAATAGCACGGCGCCATTAATTTCTTATGAGGATCTAG------ATAATAATGGTGGAATTA
GTGAGCGGTTCGTGATGCCCCATGCGTCCGCCTCGGCCGC-------------------ATCGGACGGCTGGGAATCACT
CCTTGCCAAAATAGGATAATATTTATCCAAAAAAAAACCTTCCCGTTCTGTCTTGTGTCTCCACGGGCGGGTTGGATCC-
----AAGTGTCCAGTATAAATAAAACGGCTACGAGAAATCTCTCTCTCTCTCTCTCTGACTCTGTCTCTCTCGCCGCGAT
CGA----CCCAAACCCTAACGCGAACGAGCGGATCGGCCGA--------------------TCGGGATGATGGAGGCGCC
GTCGTCGCTGGAGCAGCGGGTGCCGGCGGAGGAGCGGCACTGGATCGAGCGGGTGGCGCGGTTCGTGGCGCGGGACCGGG
ACGGGGACCTGGCGGAGGCGCTGCTGCTGCGGCTGCTGAGGATCACGCGCAACGGCCGGCGCTGGGGGTTCCTGGCCAAC
GACCACCCGCTGCACCCCTACTACCTCCAGCAGAAGGTCTCCGAGCAGTGCCGCATCCTCCGCCCCCGCCACGCCGCCGA
CCGCTGACCGCCCCCCCTCCGCCGCGCGGCTGCATGCAT----------------GCATGCATCTTGCCGCCTCTGCTCT
GTTGTTAATTTTCCTTTTTCTTTTTCGTCGTCACATCAC--ATTTTTTTTTGTAGGATTGTA----GTAGTATGTGATTA
ATTAATGACGTGCCGTCGTTGTGAG-------------ATCGGCTGAGGATTCAAAGGAGGCAGCCGC----TGGTTCTA
ATAAGAAATAAC--A-----------------------------------CTGTATTAGGCCAGATGGTTTC-TTTTTGG
ATAAGATTGATGATTGATTATGTGCTTAATTAACTGTTTCCGAAAAAAAAGGTGTGCTAACTCACTACCGGACTCGCCGC
CTATGCCGTCGGCTGACTCTCTATGCTGGGAAAGGCTGGGATAATGTCAGTGGCCTGGGCTCCAAGCTTCACTGGGGTTT
GCCTGAGCCCAGTTTCTGTAGGCCGCTTCAATTTTTTTTTTGAGATGCTGAATTCTGTTTCTGCCTTTGCTAGTCCCTTT
TTTGTCTTCGCAAATTGGATTAATATGACATAATGTGGTTTATTTTTTGTGTGTTCAATTATTATGTTCTATAATACCTC
CAACATTGCTTGGTTGAGATGCATTTGCAGTCTTACTGACCAACATGCCGATTACGGCTTCTCGCCGCGGTTCCGTCTTC
CATCCGAAGGAGAAACCACCACGAACAGAAGTTCCCCTGCATTCAGGCAACTAACAAGTTTTTCAAGCAGACTGGACAGA
CAGATCATTACAGGAGAGCAAGGCACCAT----CCACCACTGTCAAATTACAGGACAGACAGAACACACTGCTACTACCA
CCAGGCACCAGAACTTACTGAACAGCGGCAAAACGATTGCACGACCAG----GCATCATACCAAACGGTCGTAGTCTTCC
TAGTCGTTTGATTCACGAAATTCGAGGGCGATGCTACATTTGCTGACAAGATTGTATTCGGCAGCGGTGCACGAATCCTC
CAAAATTTTGATACCATAGAACAATTCATGACGAAGACCTTCTGGAATGGGCACCTGATCCTTGATCCTGCTCTTGACGG
TGGCAATGGTGTCGA
>chr5A_65
----------------------------------------------------------------CTGAGAGAAAAGTCAA
GCGTTCAGCATTTGATGAAATCATTTTCCTCCTAATCACAGGCGAAGATGGAAAGAAAGCGAGCTCGCGAGCACGACAGG
TTTGCTCGGAAGCTGGCGTCAGCGAGACGCAGAGCAGAGGCGAAGAGGGAGGCCGCGGAGGCGAGGAGGAGCCAAGAAGC
GGAGCGAACGGATGAGCAGGCGGCGCAGATCCGTAAGACCGGGCACATACCTTCCTCGATCTCTTGCT------GGTGCT
GGTGCCTATGATC-ATCTTATGCCTCTGAGCATC--GTAGAAATGTTATGTTTCTCCTGAAAACGACCATTGTAAAAATG
CTACTGGCTCATCTTTTATCAGCAAGGAATGCGAAGTGTGTCGTCATTTTTCTCGTCCTCTCCTGTCGATTTGCCAGATC
GGATAATATCGACGCCCGTAAATGCGCGCTCATCATTTTCTTGAGGAATTTAAACCTTGCCATGGGCGCTGTTGGAGAGC
AAATTTGGCATTATAT------TTATAGCCACAAGAAATCCAGTTTTAATCAACACTTAATGACAAAGGATAAAAGAATA
TAAATTACTTCCTATGAAAAGGAAAAAAAAAGATATCCATTGCATAAATGGATTTTTT-------TTGTACTACCAGTGC
ATGAATGCAGGGA--AGAAAATAGCACTGCGCCATCAATTCGCTAGGCGGATGTAGATAATAATAATAATGGTGGAATTA
GTGAGCGGTTCGTGATGCCACGTGCAT---------CCGC-------------------ATCGGACGGCTGGGAATCACT
CCTTGCCAAAACAGGATAATATTTTATCC---AAAAACATTCCCGTTCTGTCCTCTGTCTCCACGGGCGGGGC-------
----------CCTGTATAAATAAAACGGCTACGAGAAATCTGC----------------------CTCTCTCGCCGCGAT
CCAAAGTCCCAAACCCTAACGCGAACGAGCGGATCGACCGATCGAGCGAGGCGAGGCAGGGTCGGGATGATGGAGGCGCC
GTCG---CTGGAGCACCGTGTGCCGGCGGAGGAGCGGCACCGGATCGAGCGG------------GTGGCGCGGGACCGGG
ACGGGGACCTGGCGGAGGCGCTGCTGCTGCGGCTGCTGAGGATCACGCGCAACGGCCGGCGCTGGGGGTTCCTGGCCAAC
GACCACCCGCTCCACCCCTACTACCTCCAGCAGAAGGTCTCCGAGCAGTGCCGCATCCTCCGCCCCCGCCACGCCGCCGA
CCGCTGACCGACCGCCC------------------GCAT----------------GCATGCATCTTCGTTGTTTTCA---
------------TTCATTCTTGTCTCGCGATCGCATCCCATTCTTTATTC-GTAGGATTGTTGTTTGTATGTG-------
CCTAATAACGCGCCATTGATACGAGGAGATCTCTCCAGAGCGGCCGAGGATCGAAGGAAGCAGCTGTGGGCTGGATTCCA
ATAAGAAATAGTACTAGGCACGTCAAAGAAAAGAAATAGTAGCAGGGCTTCTGTATTGGGCCAGGTGATTCT-TTAGGTG
AAA-----------------------------------------------------------------------------
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-----------------------------AAAACGATTGCACGATCGACCACGCATCATACCAAACGGTCGTAGTCTTCC
TAGTCGTTTACTTGACGAAATTCGCAGGTGATGCTACATTTGCTGACAAGATTGTATTCGGCAGCGGTGCACGAGTCTTC
CAAAATTTTGCTGCCGTAGAACAATTCATGACGAAGACCTGCTGGAATGGGCACCTGATCCTTGATCCTGCACTTGACGG
TGGCAATGGTGTCGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
--S------------S-----S-----------S----------------------------------------------
-----SS----------S---------S----------------------------------------------------
---------------------------------------------------------------S----------------
-----------------S--------------------------------------------------------------
----------------------------------------------------------------------------S---
---------------------------S----------------------------------S-----S-----------
--------------SSSSSSSS--------S-----------------S-------------------------------
S--------S-S--------------SS----------S--------SS----------------------------S--
S------S----------------------------------------------S-------------------------
-S------------------------------------S-SSSSSSSSSSSSSSSSSSS---SS-------------S--
--SS--------------------------------------------S-S-S--SSS-S-SSS---S-SSS--SSS-SS
SSSS-----------------S----------------------S-------------------------S-SS------
-------S--------------------S---------S-----------------------------------------
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--------------------------------------S----------------------S------------------
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-------S-SS---------S---S--S-SSSS--SSS-SSSSSSSSSSSSSSSS---------------S---------
----------------------------------------------------------S---------S-----------
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-----------S-S-----------------------------------------S----------------S-------
--------------------------------------------------------------SSSSSSS-----------
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----------------SS-SSSSSSS-SS------------------------------------------------S--
--------S--------------S-----------S------S-------------------------------------
-------------------------------------------------------------S--S---------------
----------------------------------------------------S-S-------------------------
-----------------------------SSSS------------------------------------------S----
-------------------S-------------------------S-S-S-S-SSSSS--SSS-----------------
-----------------------------------------------------------S--------------------
------------------------------------------------------------S----------S--------
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>forward_1069
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---------CAAACCCTAACGCGAACGAC---------------------------------------------------
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>reverse_2260
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-------------------CAACAGCGGCAAAACGATTG-----------------------------------------
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