>input_sequence_85760
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------------------------ATGTCAGTCGGCCAGAAGTACGCCGAGGACGCGAGCGCCGGCTTGCCGAAATCGTC
GTCCAGCGGTGCGCGGTATGACCGCCTCTTGTCTGGCCTTGCCGCCGGTGCGTTCGCAGACATAGAACCTGACAAGCTCA
AGGGCGAAATCCAGCGATGGGCCAAGGCGGTCGGGGCGCTGCTGCGCCAGCTGAGCTTCGGCGCCTGGCCTGAGAAGAGC
GACGGCTCGTCGGAGCACCGGAACGCGGGCGACGAAAGATGA--------------------------------------
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>chr3A_1_TraesCS3A01G252600
CCATATTGCAAATAAACATCCCACTATAACCATATAGGGAAAAGAAAACATCAATAACTACACATGCATACCTCTGAAAA
ATGTCGCAGGGGAAAACAACAGATTTCTCATCGCGCGCGCGCGAGAGAGAGAGAGGGAGGGAGGAGAGAGGGAGAGAGAG
ACACTTAGGATTAACCATATTCAACACACGTTTTTTGTTGTTTTGTGTGAACACCGAGGCCATCGCCGGCGAGGGTGAGA
AGAAGGATAAGCAGCAACACAAATATGATGCCTCGCAAAAATAAAGGAGATGGGCCTATTATGATCTTGAGTGATGATTG
TTGAGTTAAGAGCGTGTGTTATGTTTTCTATCCCGTTGCAACGCACGGGCTCTTTTGCTAGTTAACTAAAAACAGAAAAC
CGGATTAGTAAACGTACGTACCAAAAACTCATGGGTGGCATCGCTCCGGACAGAACAGTCGTGTGTGGCGGGCCACATGA
TCATATGAATAGTACCATCTCGGATGTAGAAAATAATATAGGTGGAAAAACTGAAACCGTAAATTCACGAAAAGAAGTGT
ATTGTGACGGTGAATCCGACAAAATCAATTCATGATTTATTATTATTAGGGAGGGATGTGCTCGTTGAAGTGCTAAACTT
ATATCAACTGGGTATTATGCGTGGTAACTTAAGTATGCAACTTGAATTTGTATT------------------TTACTTTT
TCTTCTGTCGATCATGCTACACGGTTTCTTCTTTCAACCTTTGAATTGGTTGGTTCAAGCATTCCGTGGGCATCCAAGGA
AATTTAACGCCACGGAACAA-TTTAACAGTCAAAATCCACGCCGTATTGT------------------------------
-------------AAGTCGATTCCTTGGACGCGAAACCTTGGGGCATCTTGGAAGGAACCATGGAGCCAAACCCACTCTT
CACAAGCCGTGCGGGACACCCACATCTCTACCCGTAACGGTATAAAACCCGACTCCCACCTATAATCCACAATTTCACCG
AAGAACCC--AAGACCCCGAGGGCATGTCAGTCGGCCAGAAGTACGCCGAGGACGCGAGCGCCGGCTTGCCGAAATCGTC
GTCCAGCGGTGCGCGGTATGACCGCCTCTTGTCTGGCCTTGCCGCCGGTGCGTTCGCAGACATAGAACCTGACAAGCTCA
AGGGCGAAATCCAGCGATGGGCCAAGGCGGTCGGGGCGCTGCTGCGCCAGCTGAGCTTCGGCGCCTGGCCTGAGAAGAGC
GACGGCTCGTCGGAGCACCGGAACGCGGGCGACGAAAGATGATTCGGCTTGGACTGGACAGCTGATGGCACTTCACAG--
--------------------------------------------GCGACGGCCGACAAGATGCTGCTGAAGATTTCATTA
ATTCATTCATTAGTTCGTTGTATGTACTCTGATCTACTCCATCCGTTTCTAAATATTTGTCTTTCTAGACATTTTAAATG
GATTACCACACACGGATGTATATAGACATATTTTAGAGTGTAGATTCACTTATTTTGCTCCGTATGTAGTCACTTATTAA
AATATCTAGAAAGACAAATATTTAGGAACTGAGGGAGTATGTCTCTCCCATAGTCCCATTCTTAACAAA-----TAGAAT
AAAATTTGGGCAGCAAATATGATACTCCC------CC-------------------------------------------
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-------------------------------------------------AAAATAAATGTCGCTGATTTAGTACAAAACG
GAGGGAGTAGTA---ACCTGTGAATAACAATAAACAGCAGCAAGCAC-GGTCTTTTTTCCTCAGCAAATTGGCGGGCTAA
TTTTGCACTGTTGTGAACCATGGTCCTCAAAATAATACTCACACCACAGATGTATCTCGCTTGCAAGGAAACCACCCGTA
ACATCT-TCACAATGATGGGCAACATGCCCCCACCCAATCTCCTATAAATTATCTCGTAGCAATATATACATTTACCAAT
GGGAACAGTTAGCAACACCAGGACGTCAGTAATTAGAGCACTAAAATTTCTACACTGCCTACACGAGATTGACAAATCTC
TGCTCTATCCTAGTTTACAAAACTAGCTTTGCCTTCTAAATACTGAAGGTGGTAATGCTCCTCACTCCCATTTCCTATCA
AGTTTTGAAATGCTCCTCAATAGTTGTTGAGAGCAGACAGTCTGTGCCTGAGCTACATACCGCACTCGATTTGCTCTCAC
CCATGCAGGCTCCTAATTGAACAAAAAGAGGAAAAGCCCACATTCAGTTTCTAAGATAAATTTGTGCCGCAAACAAAGGC
ATTGATATAAATACCACTACATATGCACAAAGCATAACGGTGAAGAAAATCACCTCAGGGACAAAGTGCGAGAAGC
>chr3D_616
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-------------------------------------------------------ATGTGCTCGGTGAGGTGCT-AACTT
ATATCAACTGGGTATTGTGCGTGGGAACTCAAGTATGCAACTTGTATTTGTCTTTTGGTTATCAGATGGGCATTACTTTT
TCTTCTGCCGATCGTCTT--ACGGTTTCTTGCTTCATCCTTTGAATTGGTTGGTTAAAGTATTACGTGAGCATCCAAGGA
AATTTAATGCCACGGAACAA-TTTAACAGTCAAAATCTACGCCCTATGGAATCGCGTGCACATGAAATTGCGAAATCGAT
CTGTGCAGCCGAAAAGTCGATTCCTTGGACGCGAAACCTTGGGGCATCTTGGAAGGAACCATGGAGCCAAACCCACTCTT
CCCAAGCCGTGCGGGACACCCACATCTCTACCCGTACCGGTATAAAACCCAGCTCCCACCTATAATCCACAATTTCACCG
AAGAAACCAAAAGACCCAGGGGGCATGTCAGTCGGCCAGAGGCCCGCCGAGGACGCGGGCGCCGGCTTGCCGAAGCCGTC
GTCCAGCAGCGCGCGGTATGACCGCATCTTGTCTGGCCTTGCCACCGGCGCGCTCGCGGATATAGAGCCTGACAAGATCA
AGGGCGACATCCGGCGATGGGCCAAGGCGGTCGGGGCGCTGGTGCGCCAGCTGAGCTTCGGCGCCTGGCCTGAGAAGAGC
GACGGCTCGTCGGAGCACCAGAACGCGGGCGGCGAAAGATGTTTCGGCTTGGACTGGACAGCTGATGGCATTTCACAGCC
ATCAATCCAGGAACGACACTGATATGACTGGTAACCATCTACAGGCGACGGCCGAGAAGATGCTGCTGAAGATTTCATTA
ATTCATTCATTAGTTCGTTGTATGTACTCTGATCTA--------------------------------------------
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---------------------------------------TGTCTCTCCAATAGTTCCATTCTTAACAAATAC-GTAGAAT
AAAATTTGGGCAGCAAATATGATACTCCCTTTGTTCC-------------------------------------------
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-------------------------------------------------AAAATAAGTGTCGCCGATTTAGTACAAAACG
GAGGGAGTAG----TACCTGTGAATAACAATAAACAGCAGCAAGCACAGTTTTTTTTTCCTCGGCAAATTGGCGGGCTAA
TTTCGCACTGTTGTGAACCATGGTCCTCAAAATAATACTCACACCACAGATGTATCTCGCTTGCAAGGAAACCGCCCGTA
ACAGCCATCACAATGATGGGCAACATGCCCCCACCCAATCTCCTATAAATTAT---GTAGCAATATATACATTTACCAAT
GGGAACAGTTAGCAACACCAGGACGTCAGTAATTGGTGCACTAAAATTTCTACACTACCTACACGAGATTGGCAAATCTC
TGCTCTATCCTAGTTTACAAAACTAGCTTTGCCTTCTAAATACTGAAGGTGGTAATGCTCCTCACTCCCATTTCCTATCA
AGTTTTGAAATGCTCCTCAATAGTTGTTGAGAGCAGACAGTCTGTGCCTGAGCTACATACCGCACTCGATTTGCTCTCAC
CCATGCAGGCTCCTAATTGAACAAAAAGAGGAAAAGCCCACAATCAGTTTCTAAGATAAATTTGTGCCGCAAACAAAGGC
ATTGATACAAATACCACTACATATGCACAAAGCGTAATGGTGAAGAAAATCACCTCAGGGACAAAGTGCGAGAAGC
>chr3B_616
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-------------------------------------------------------ATGTGCTCGTTTAAGTGCT-AACTT
ATATCAACTTGGTATTTTGCGTGGGAATTTAAGTATGCAACTTGAATTTGTATT------------------TTACTTTT
TCTTCTGTCGATCGTGCTACACGGTTTCTTCTTTCAACCTTTGAATTGGTTGGTTCAAGTATTCCGTGAGCATCCAAAGA
AATTTAACGCCACGGAACAAATTTAACAGTCAAAATCTACGCCATATGGA------------------------------
-------------AAGTCGATTCCTTGGACGCGAAACCTTGGGGCATCTTGGAAGGAACCATGGAGCCAAACCCACTCTT
GACAAACCGTGCGGGACACCCACATCTCTACCCGTACCGGTATAAAACCCAGCTGCCACCTATAATCCACAATTTCACCG
AAGAAACCAA--GACCCCGCTGGCATGTCAGTCGGCCAGAGGGCCACCGAGGAAGCGGGCGCCGGCTTGCCGAAGCCGTC
GTCCAGCGGCGCGAGGTATGACCGCCTCTTGTCTGGCCTAGCAGCCGGCGCGCTCGCGGACATAGAGCCTGACAAGCTCA
AGGGCGACATCCAGCGATGGGCCAAGGCGGTCGGGGCGCTGGTGCGCCAGCTGAGCTTCGGCGCCTGGCCTGAGAAGAGC
GACGGCTCGTCGGAGCACCGGAACGCGGGCGGCGAAAGATGATTCGGCTTGGACTGGACAACTGATGGCACTTCACAGCC
ATCAATCCAGGAACGACACTGATATGACTGGTAACCATCTACAGGCGACGGCCAACAAGATGCTGCTGAAGATTTCATTA
ATTCATTCATTAATTCGTTGTATGTACTCCGATCTA--------------------------------------------
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---------------------------------------TGTCTCTC--------CCATTCTTAACAAATACAGTAGCAT
AAAATTTGGGCAGCAAATATGATACTCCTAGTGAGACTTTTGACCATATTGGGGACAGATCCAGGAGCAAAATGAATGGA
TGGGCAGAGCGGCTACTAGCTTGTGCTGGGAGGGAAACTCTTATTAAATCAGTGATCCAGGCCATTCCAACCTTCAGTAT
GAGTTGTTTTCGTCTAACGAAGAAGGTTTGCAAAGGCCTCACCACTAGTATGGCCAAATTCTGGTGGAGTGGATCTCTTG
ATCGACGATCTATGCATTGGCTATCGTGGGAGAAACTTGCATCACCGAAGTGTTAGGGAGGAATGAGTTTTCGCGATCTT
GAGTTATTCAACCTGGCACTGCTTGGTAAGCATGGATGGAGATTTATTACTAATCCTAACTCTTTATGTGCCCAAGTGAT
GAAGGGGCGTTATTTTCCGGATTGTGATTTTATGGAGGCTTCAGTACCACACACATCGTCTGCTATTTGGCGAGCGATCA
TCGCCGGAAGGGAAGCTCTCCATGTTGGTCTCATTAAGAGGGTGGGGGACGGCAACACTATCTCGATTTGGGAAGATAAG
TGGATCCCGGGCCTTTCATCTCTGTCCCCTACGGTGATGCCGGGAGGGACTCTTGCCACCGTCGGTGAGCTCATCGACCA
TGACAACGGGACGTGGCGGCGGGAATTGATCTACAATGTTTTCATTCGACCGGACGCCGACGCCATATTGAATATCCCCT
TGCGCCACAATGGGGGTGATGATTTTCGAGCTTGGGTTTTTGAAAGAAGCGGCAACTACTCCGTAAAATCTGCGTACCGT
GCTCTCGTGACTCGGAAAGAGCGGCTAGCTCAAGAGGAAGGGGCGGTTACAAACTCCTCACAGACCGATGAACGGATGTG
GAAGTCGCTTTGGAAGCTTAGGGTTTTGCCGAAGGTACGTGTATTCTGGTGGCGGGTTATTCGTCGCATTCTTCCAGATG
AGTGCACGCTTCGGTCGTCATATTAAACCTATAAGCAGATGCAATGTCTGCCATGCAATGGATGAGGATCTCATGCACGC
CTTAGTGCATTGCTCTCATGCCAAACTTTTCTGGGAGCAGGCTCACGGTCTCTTTGGCGTTCGACGGCCGCGGCTGCACC
CTGATACATGGTCTCGTGATATCATATGTGATGATCAATTCACGGACACTGAAAGGGCCCAAATGATCTCTGTTATGTGG
GCAATCTGGCACTCGAGAAATCGAGTGACTCATGATGATGACCAGCTGGAGCCTTTCACTTCGGTGAGGCGGATTCGGGA
GGACTTGGCATTGCTGGATATCCCGCATTCTCATGCTGCAGTGCTACCAGGTCATGGTTGGAGACCGCCGGACTCAGGGG
TGGTTAAGATCAACACGGATGCAGCTTTGAGTATGGATTCCGACAAGGTGGGTGTGGGTGGTGTAGCACGTTCTAACACA
ACCTTGTTGGGTGCTTGGAGTAAACCTCATATTGGGGTCACGGATCCTTTTATCGGTGAGACGTTTGCGCTTCGAGATGG
AGTTATTTTTGCAAATCTACGGGGCTTCTCACATGTGATAATGGAAACGGATTGCCTGGAGATTGTTAATCTCTGGAACA
CTCGCCACAACAGCCTCTTTGTGGTGGCACCTTTACTTGTCGAAATTGGAGAGCTAGCTGCTACTTTTTCTTCTTTTTTA
TTCAACATGTAATGCGAGCAGCCAATGTACCGGCCCACCTTTGTGCAAAACATGCATGTACACTGGTGGTCACCGAGAGT
TGGACTGACTTGAGACCCACTTTCCTGCTCACCAGCTTTTTGGCTGATGATGCCAGGAGCTCGTTCGTTGAATAAAAGCT
CTCAGGTTTAAACGCAAAAAAAATTATGATACTCCCTCCCTCTGTCCCAAAAATAAATGTCGCTGATTTAGTACAAAACA
GAGGGAGTAGTACCTACTTGTGAATAACAATAAACAGCAGCAAGCAC-GTTTTTTTTTCCTCGGCAAATTGACGGGCTAA
CTTTGTACTGTTGTGAACCATGGTCCTCAAAATAATACTCACACCACAGATGTATCTCGCTTGCAAGGAAACCATCCGTA
ACAGCC-TCACAATGATGGGCAACATGCCCCCACCCAATCTCCTATAAATTAT---GTAGCAATATATACATTTACCAAT
GGGAACAGTTAGCAACACCAGGAGGTCAGTAATTAGAGCACTAAAATTTCTACACTACCTACACGAGATTGACAAATCTC
TGCTCTATCCTAGTTTACAAAACTAGCTTTGCCTTCTAAATACTGAAGGTGGTAATGCTCCTCACTCCCATTTCCTATCA
AGTTTTGAAATGCTCCTCAATAGTTGTTGAGAGCAGACAGTCTGTGCCTGAGCTACATACTTTACCCGATTTGCTCTCAC
CCATGCAGGCTCCTAATTGAACAAAAAGAGGAAAAGCCCACATTTAGTTTCTAAGACAAATTTGTGCCGCAAACAAAGGC
ATTGACACAAATACCACTACATATGCACAAAGCGTAACGGTGAAGAAAATCACCTCAGGGACAAAGTGCGAGAAGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-----
----------------S-------S-------------------------------------------------------
-------------S---------------------------------------------S--------S-----------
-------------------------------------S-----S---S-S------------------------------
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------------------------------------S-------------SS----------------------------
-----S-------------S--------------------S-SS-------------S----------------SS----
---------S--------------------------------------S---S----S--------S-------------
-------S---------------------------------S--------------------------------------
-------------------------------S------------------------------------------------
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------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----S-------------------------
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-------------------------------------------------S-S----------S-----------------
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---S-S-----------------------------------------------SSS------------------------
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-------S-------------------------S------------------------------------------
>forward_145
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---------------------------------------------AGAGAGAGAGGGAGGGAGGA---------------
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>reverse_1187
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------------------------------------------------------------------ACCTGACAAGCTCA
AGGGC---------------------------------------------------------------------------
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>forward_1083
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-----------------------CATGTCAGTCGGCCAGAAGT-------------------------------------
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>reverse_3897
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--------------------------------------------------------GCCTACACGAGATTGACAAATCT-
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