>input_sequence_85758
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--------------------------------------------------------------------ATGGCGATCCAC
CTGCTGGCGTTCATGGCGGCCAAGGGTTTCGTGCAGGTGTTCCAGGTCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTG
GCTGCCGCTCCCGCGCAACCTGCCGGAGGTCTGCGTCGTCGTCTGCGGCGCGCTCGCCTCCCACGTCGCCTGGCTGCGCC
GCGCGTACGCCCGCCGCCGCTCCATAAGCCGCGACGATAACGACAACGAGCTGCACCGCCAGGCGCTCGTCGACGCC---
GCGTACT--GA---------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G541700
TACGCCACCGTCGGCGAGATGTGGTCAGGACTCAAGACTGAGAGTGAGGATACAGTGGAGACGTGGGGGAAAGGGCGTGT
GACGGCTAGGGTTAGCTAATTGAGGGAGAGGCATATGGCGCTGGTGTGGTCGATTTGTTGGGTTGGGCCTTCACATTCCA
GATCAAGGAATCTAGCGACGGCCCATACGCACAGAACAATCAACCACTGTACAGGTTTTAGACATTTTCGGGCCGAGCCG
GGCCGAGCTAATTTCGGGTTGAAAATTAAAGCCCGAGCCTGGCCCGGATGTTACTTCGGGCTGCAAATCAAAGCTCGAGC
CCTGCCCGAGGTGCAAGCCCAGCTCGGCCCGGACCGGGTTTTTTTGGCCGGGTTGCGGGCCGGGCTGCCCATGCCCAGGT
TTACGTTCAATTCATCGTTGGCAAGCGGGCTTCGCGGTGCTTGTGTAGGAGTTCAAGAGCATTTTGGTTCTAGATGTATC
GATTTCAAGTTTTGGTCTGATTTT--GTAATTAATTAGGGAAAACTCCGTTTAAAAATCAACGAATTATACAATGTTTTG
ATCTTCCTTTTGAAAAATTCTACTAGTGCTAATCTATAAAAATCTAAATATACTTACGGCAAAAATATTGAAATATTTGG
AGACTTTTCCTGCCGACTGTCCTAGTCATCCTGGCCGTCCCACCTGACCGGAAACCGTCACATCTTTACCCAG-TTGACC
CCACGGGATATCGCCACGTCGAGA------------CGTCACAA-TGTTATCCAAATCTGGCCAAGTTGTCGGTCCTACC
AAGGCACCAC--TAAAAAAACAATATAAAATGATC-TTCCCGCTCGCACCCGGGGAAGGCCGCAACCTCCCGCCCCGCCC
CGCCCCACCACCGGCAAAAGCAAAACCGCGCCACCACGGCAGCGACATAGCACCATTCTGAATCAACACATTTCCTCCTT
GCCCCAC---------ACCCAGCGAGCGACGATCCGTCGGGCACTCGGGCTAGCTCCTGTTGGCGGCGATGGCGATCCAC
CTGCTGGCGTTCATGGCGGCCAAGGGTTTCGTGCAGGTGTTCCAGGTCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTG
GCTGCCGCTCCCGCGCAACCTGCCGGAGGTCTGCGTCGTCGTCTGCGGCGCGCTCGCCTCCCACGTCGCCTGGCTGCGCC
GCGCGTACGCCCGCCGCCGCTCCATAAGCCGCGACGATAACGACAACGAGCTGCACCGCCAGGCGCTCGTCGACGCC---
GCGTACT--GAGATGCTGGAGCAGAAGCAGGACGGTTTTTCCTTTTCATTT----TGATTTGTAGGTTTCTTGTTCACGG
G-----CTGCATGCTCGATCCTTGCAGTATTCCCGAGCGTCCCGTGACATGTGTATGTTGGCTGTAAGTTGTAGTAACAT
TCAATCTGTAGATACGAGTAAATTCTAGTACTAAAACCGACGGATTCTGTCGTGATTATTCGCTTTGGTCAATTGCTCAA
GCATCTCCAATACAACGGTACTAGAGT---TATTTCTTCAGGATTTTTTCCATGGCAAGAACAGAGTACTTGTATTTGTT
TTGACTTTTGACCCGGGTGGCATTGGCAAGAACAGAGGAAACTTCGTCCTGTATCATACCGAGTACGTAACGTACGTGCC
ACAATGTGCCAGCTCCTTCACGTCATCTTCTTATCGACTCGTCCTAGCTACTCTCTGGTTAACCTAACTAATATTCAGTC
GAGATCATCATGCTAAGTACTAGTACTG----------------------------------------------------
-----------------------------------------------------------CATTGCTGAG-----TCAGCT
GCACCACCATTCTTGAAGCAAAGAGGGGCATTAATTAGTCTAGTAGATCATGCTTGTTGTGTTACTCACAAGTTAGAAAT
--------------ATCTGGCCCCGGCCCA-AAAAAATTGCAAAACATACTGAG-----CACCTGATAAGTACATGCAAT
AGATAAACTATAGTGTCTTATCTGAAACGGTGAAGGCGGCTAAAAGTAATATAATTTTCTGTTG-----TTGAT----GA
CTTTTCTACTCAGCATGATGGCGTGAGTTGTTAGCATTCTTAACCGACTATTATACGACCACTGATTGTTAAACGACAAG
GGCATTTGTCCATCTTTCACGGCATCTTTCACGACCAGTCACCCCTTCTTCTCGACAGTTCTAGCTTGTGCGCGAACCCT
GTACTACTACATATAGCTGAACAGCAGAAACA--ACCTCTGAAAGCCAGATTCAGATAATCAGATTTGTGCGTGAAAACC
TGGCGGAATCGTATACATCATTTGACGGATGCTCAGAAGTAGTACTAACC
>chr2D_405
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----GTTCAATGCACCGTTGGCGAGCGGGCTGAGCGGTGCTTGTGTAGGAGTTCAAGAGCATTTA-GTTCTAGATGTATC
GATTGTAAATTTATGTATGATTTCCCGTAATTAATTAGGGGACGCTCTGTTTAAAAATCAACGAATTATACAATGTTTTG
ACCTTGGTTTTGAAAAATTCTACTAGCACTACTG----AAAATCTAAACATAGTTACGGCAAAAAAG--GAAATATTTGG
AGACTTTTCCTGCCGACCGTCCTAGTCACCCTGGCCGTCCCACCTGACCGGAAGCCGTCACATCTTTACCCAGCTTCACC
CCACGGGATAACGCCACGTCGAGGCGTCATGTTGCTCGTCACAA-TGTTATCCAGTTCTTGCCAAGTTGTCGGTCCTCAA
GG-----CAC--TACTAAAGCAATATAAAAAGGTGGTTCCCGCTCGCACCCGGGGAAGGCCGCAACCTCCCGCCCCGCCC
CACCCAGCCACCGGCAGAAGCA------CGCCACCACGGCAGCGACACAGCACCATTCTGAACCAACACATTTCTTGCTT
GCCGCAG----CAGCTGCACACCCAGAGACGATCCGTTGAGCTACTAGCTTCTTGGC----GGCGGCGATGGCGATCCAC
CTGCTGGCGTTCATGGCGGCCAAGGGCTTCGTGCAGGTGTTCCAGGTCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTG
GCTGCCGCTCCCGCGCAACCTGCCGGAGGTCTGCATCGTCGTCTGCAGCGCGCTCGCCTCCCACGTCGCCTGGCTGCGCC
GCGCCTACGCCCGCCGCCGCTCCCGAAGCCGCGACGACGACGACAACGAGCTCCACCGCCAGGCGATAGTCGACGCCTCC
GCATACTGAGAGATGCTGGAGCAGGAGCAGGACGGTTTTTCCTTTTCATTT----TGATTTGTAGGTTTGCT-------G
G-----CTGCATGTTCGATCATTGTG---TTCCCGAGCGTCCCGTGACATGTGTATGTTGGCTGTAAGTTGTAGTAACAT
TCAATCTGTAGATACGAGTAAATTCTAGTACTAAAACCGACGGATTCTGTCGTGATTATTCGCTTTGGTCAATTGCTCAG
C------------------------------ATTTCTTCAGGAATTTTTCCATGGCAAGAACAGAGTACTTTTATTTGTG
------TTTGACCGGGGTGGCATTGGCAAGAACAAAGGAAACTTCGCGGTAGATCACACCAA---------GTACATACC
AAAATGTGCCAGTTCCTTCACGTCATCTTCTTATCAACTCATCCTAGCTACTGTCTGAT-----TAAGTAATATTCAGTC
GAAATCATCATGCTAAGTACTCCCTTTGTTCGGAAGTACTTGTCCTAAAAATAGTTGAAAATGGATGTATCTATAACTAA
AATAAGTCTAGATACAACCATTTTAGGACAAATATTTTCGGACGGAGGGAGTAGGTGCCCATTGCTGAGTCAGCTCAGCT
GCACCACCATTCTTGAAGCAA-------------TTAATCTAGTAGATCATGCTTGTTGTGGTACTTACAAGTTACAAAT
--------------ATCTGGGCCCCAA--A-AAAAAACTGCAAAACATACTGACCACCTCACCTGATAAGTACATGCGCT
AGGTAAAGTACAGTGTCTTATCTGTCACGGTGAAGGCGGCTAAAAGTAAAAGAATTTTTCTCTTGTTGATTGAT----GA
CTTTTCTACTCAGCATGATGGCGTGAGTTGTTAGCATTCTTAACCGACTATCACGCGACCACTGATTGTTAAACGACAAG
GGCATTTGTCCATCTTTCACGGCATCTTTCACGACCAGTCACCCCTTCT---CGACAGTTCTAGCTTTTGCGCGAACCCT
GCACTACTACTTATAGCTGAACAGCAGAAACCATACCTCTGA--------------------------------------
--------------------------------------------------
>chr2A_742
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------------------------------------CGTCACAATTGTTATCCAAATCTGGCCAAGCTGTCGGTCCTACC
AAGGCACCACTATACAAAAACAATATAAAAAGGTGGTTCCCGCTCGCACCCGGGGAAGGCCGCAACCTCCCGCCCCGCCC
CACCCCGCCACCGGCAAAAGCA------CGCCACCGCGCCAGCGACACAGCACCATTCTGAACCAACACATTTCCTCCAT
GCTACAGCCTACAGCAACACACCCAGCGACGATTCGTCGAGGTAGCTTGTG-TTGGC----GGCGGCGATGGCGATCCAC
CTGCTGGCGTTCATGGCGGCCAAGGGGTTCGTGCAGGTGTTCCAGGTCTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTG
GCTGCCCCTCCCGCGCAACCTGCCGGAGGTCTGCGTCGTCGTCTGCAGCGCGCTCGCCGCCCACGTCGCCTGGCTGCGCC
GCGCCTACGCCCGCCGCGGCTCCCGAAGCCGCGACGACGACGACAGCGAGCTCCACCGCCAGGCGCTCGTCGACGCCTCC
GCGTACTGAGATGCC--------GGAGCAGGACGGTTTTTCCTTTTTCATTCTGATGATTTGTAGGTTTGCT-------G
GCTGCACTGCATGTTCGATCATTGTG---TTCCCGAGCGTCCCGTGATATGTGTATGTTGGCTGCAAGTTGTAGTAGCAT
TCAATCTGTAGATACGAGTAAATTCTAGTAGTAAAACCGACGGATTCTGTCGTGATTATTCGCTTTGGTCAATTGCTCCA
GCATCTCCAATGCAACGGTACTAGAGTTACTATTTCTTCAGGAATTTTTCCATGGCAAGAACAGAGTAGTTTTATTTGT-
------TTTGACCGGGATGGCATTGGCAAGAGCAGAGGAAGCTTCGTCGTAGATCATACCGAGTACGTAACGTACGCGCC
ACAACGTGCCAGG-CCTTCACGTCATCTTCTTATCGACTCATCCTAGCTACTCTCTGGT-----TAACTAATATTCAGTC
GAGATCATCATGCTAAGTAAG-----TGCATTG-----------------------------------------------
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-------------------------------------------------CTGAG-----CACCTGATAAGTACATGCACT
AGGTAAAGTATAGTGTCTTATCTGACACGGTGAAGGCGGCTAAAAGTAAAAGAATTTTCTCTTG-----TTGAT----GA
CTTTTCTACCCAGCATGATGGCGTGAGTTGTTAGCATTCTTAACCGA-TATTATGCGACTACTGATTGTTAAACGACAAG
GGCATTTGTCCATCTTTGACGGCATCTTTCACGACCAGTCATCCCTTCT---CGACAGTTTTAGCTTTTGCGCGAGCCCT
GTAGTACTACATATAGCTGAACAGCGGAAACGACACCTCTGAAAGCCATATGCAGATAATCAGATTTGTGCGTG------
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>chr5A_1520
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--------------------------------------------TTTTTCCATGGAAAGAACAGAGTACTTTTATTTGT-
------TTTGACCGGGATGGCATTGGCAAGAGCAGAGGAAACTTTGTCATAGATCATACCAAGTAGGCAATGTACGCGCC
ACAAGGTGCCAG-TCCTTCACGTCATCTTCTTATCGATTCATCCTAGCTACTATTTGAT-----TAACTAATATTCAGTC
GAGATCATCATCCTAAGTATG-----TG----------------------------------------------------
-----------------------------------------------------------CACTGCTGAGTCAGCTCAGCT
GCACCACCATTCTTGAAGCAAAGAGGGGCATTAATTAGTCTAGTAGATCATGCTTGTTGTTTTACTTACAAGTTACAAGT
TATAAGTTACAAAAATCTGGTCCCAAA--A-AAAGAACTACAAAACATACTGAG-----CACCTGATAAGTACATGCACT
AGGTAAAGTATAGTGTCTTATCTGACACGGTGAAGGTGGCTAGAAGTAAAAGAATTTTCTCTTG-----TTGATTGAAGA
ATTTTCTACTTAGCATGATGGCGTGAGTTGTTAGCATTCTTAACAGACTATTATGTGACTACTGATTGTTAAACGACAAG
GGCATTTGTCCATCTTTCACTGCATCTTTCCCAAGCAGTCATCCCTTCT---CGACGGTTCTAGCTTTTTCAAGAACCCT
GTACTACTACATATAGTTGAACAGCAGAAAC-------------------------------------------------
--------------------------------------------------
>chr2A_1652
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----------------TTCATGTCATCTTCTTATCGATTCATCCTAGCTACTGTCTGAT-----TAACTAATATTCAGTC
AAGATCATCATCCTAAGCATG-----TG----------------------------------------------------
-----------------------------------------------------------CACTGCTGAGTCAGCTCAGCT
GCACTACCATTCTTGAAGCAAAGAGGGGCATTAATTAGTCTAGTAGATCATGCTTGTTGTTTTACTTACAAGTTACAAGT
TA-------CAAAAATCTGGTCCCCAA--AAAAAGAACTGCAAAACATACTGAG-----CACCTGATAAGTACATGCACT
AGGTAAAGTATAATGTCTTATCTGACACGGTGAAGGCGGCTAGAAGTAAAAGAATTTTCTCTTG-----TTGATTGAAGA
CTTTTCTACTTAGAATGATGGCGTGAGTTGTTAGCATTCTTAACAGACTATTATGTGACTACTGATTGTTAAACGACAAG
GGCATTTGTCCATCTTTCACGCCATCTTTCCCGAGCAGTCATCCCTTCT---CGACAGTTCTAGCTTTTGTGAGAACCCC
GAACTACTACATATAGCTGAACAACAGAAAC-------------------------------------------------
--------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------S--S-------S--------SS-------------------------------SS--------------
----SS--S---SS--S------S----------------S-SS---S--------------------------------
-S---SS-------------------SS---S-SSSSS----------S---S------------SSSS-----------
-----------------S----------S------------------------S----------------------S---
----------S------------S--------------------------------------------------------
--------------S---------------S-S-S---------------------------------------------
-S----S---------------SSSSSS-------------------S--------------S-----------------
---S--S-----------S--S-S---------------S--SSS-S--S-SSSSS-SSSS-------------------
--------------------------S-----------------------------------------------------
----------------------------------------------S---------------------------------
----S------------------SS------------SS-------------S---------------------------
------------------------S--------------------------------------------SS-SSSSSSS-
-------------S------S---SSSSS---------------------------------------------------
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-----------S-------------------------------S---------------------------S-------S
SSSSSS-------S----------------------------------S-SS----------------------------
------------S---------------------------S------------------SSSSS----------------
---------------------SSSSS------------------------------------------------------
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------------------------------------------------------------------S--------S----
--------------------S---SSSSS--------S----------------------------------------S-
--S----S-----------------S-----------------------S-S--------S-------------------
------------------------------------------------------S-------------------------
-------------------------------------------------SSS---------------S------------
-------------------------------S----------------S--S----------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_314
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------------------------------------------------------TTCGGGCTGCAAATCAAAGC------
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>reverse_1224
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-----------------------ATAAGCCGCGACGATAACGA-------------------------------------
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>forward_322
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--------------------------------------------------------------GCAAATCAAAGCTCGAGC
CC------------------------------------------------------------------------------
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>reverse_1381
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--------------------CTTGCAGTATTCCCGAGCGT----------------------------------------
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