>input_sequence_85754
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-------------------------ATGGCTGGTCCGGCGAAGGCGTCGTGGATGGTGGCCATGAGCGTGGGCGCCGTGG
AGGCGCTCAAGGACCAGGCTGGCCTCTGCCGCTGGAACTATGCCCTCAAGTCCATCCACCGGGCA------GCCAAGGCC
A------ACGTCCGCGCCAGCGTCTCGCAAGGCACGAAGCAGCTTCCGGCCT---------CCGTGGTGGAGAGGCGGCA
AGCGGAGAAGGCCGAAGAGGAGCTGAGGACGGTCATGTACCTCAGCTGCTGGGGCCCAAATTAG----------------
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>chr2A_1_TraesCS2A01G532100
GGGGCAGAGAGGGGCCGTAGTGGGAAGTGTGGACGACGACCGGTCCACGGCTTCCCATTTAAAGAAGGACGGCGACCGTT
CGCTGGGCGGATGACAGGTGGGGCCACCCCGCCCGTGCGCATTGATGTTGGCGGGTCGGAGGTAGGTGGCCCCCTGCCAC
GCGGCCCCGACGCGGACGTACGAAGCGCCCATTCGTTGTCCGCCGCGATCCAAACCCGGCGCATGTTTGCGTTCGAAATG
GGTCGGCCCGGACACAAAATGGACCAGATGGGTTCGGACCGTCGCGCACTGGGCCGCCTTGTTTGTCTCTTTTACCCCAA
ACGAATGAGGCCGGACAAAATGGGGTCGCGCGGTGGAGTTGACCTCAGATGGCAGGAGAGGAGGACGAGACTTGGAGCAT
AGAAAGGAGATGGGAAGCGTGTGCCTGATCCGATGTGACAAACACGTCCGGACTTCCCATACTCGCTCAATATTTGAACT
ACATATGAAGGGTACCGGTGGGTCCAGGCATTTAAAGCCGGTTTGAGGTGTCTGTATAGATTGATTTGTTTACCGGTCAT
TGACCGGACCGTCGGGCGTACGACGAGGGTTTGAGGCGCCCGGTCTAAAACGAAAATGAACTATTATCTCATATCTGCCG
GGTTGTCCGG------TCCCAGTAGACAAAACCAGCTGCTCTGCCGC-AGAGAAACACAAGATGGGGCGAGGT-GGCAAC
CACCTGCACCGGCCG---TGCGTCGACAGCGAGAGGTGTGGG------AAGCAAAG---------GTGGGTCCGAAAGCA
CTCGGTATCCT-AGAAAACCAGCGCCCGCTGCCCGCCTGTTTTGCTCCGGCCCTCCCGTGTATATAACCGCGTCTCACTC
CCACTCTTCCACGGTTCCACCCATCAACAGAAAC-AGCTTCAGTTCAGTGACACAGTTCAAGAAAATTCCACTAC-----
------TACCATA---CACA--G-------------C----AATCACAAGCCAGTCTCCAGTCTCCAGCAAGGCATCAAG
ACCAAGAAGAA----GGAGAAAGAGATGGCTGGTCCGGCGAAGGCGTCGTGGATGGTGGCCATGAGCGTGGGCGCCGTGG
AGGCGCTCAAGGACCAGGCTGGCCTCTGCCGCTGGAACTATGCCCTCAAGTCCATCCACCGGGCA------GCCAAGGCC
A------ACGTCCGCGCCAGCGTCTCGCAAGGCACGAAGCAGCTTCCGGCCT---------CCGTGGTGGAGAGGCGGCA
AGCGGAGAAGGCCGAAGAGGAGCTGAGGACGGTCATGTACCTCAGCTGCTGGGGCCCAAATTAGGATCACTAGTAGCTTA
GGGGTGTTGCGTTCGTTGTAGCTTGTGCTTATGT------GACAATACCCTTATGATCG-ATTGTAAATACAGCTCG---
--ATGATGATGATGA---AAATTTCTGC-------TATGAGTTTACAC--CATCCT-CCTTGTCCATGTGCTTCTGTGAC
TATTTTCTGAAAGGCCAAAGATCAATCCTTATCAGGAGAG---CAAGAAAGTTCAGAGTTACACAGGCAGAGGAGTAGCT
CAGAGCAGCTTCAGCTACTTGTTCAGAACAGAATAGCCCGACTCTGAACACCGGATGGAACATCGGGCTGCCCTCCAAGA
TCTCACATCTCCTGTGGTCAAATCAAATCGGACATCTCCATATCGCTGCGGCGGAGGCCATTAGAGATTATGGCGTCGCG
TCCCTTCCAACCAATTTCTTCTCTGATTACTTTGATGGGGAACATGCATATGCGCCCCTTGCAACCAAATTCTTCTCTGG
TTATTTTGATGGGGAACATGGATATGCTCTGTTGCTGGAGTCGACATGGCTCACAGAAGGTGGAGCTTCCGGGCATGCAA
GAGAGGGAGAAAGTTCAGAGTTACACACAACACCGGGAGAGTAACTCAGCAAAGCGAGCCGCGTACAGAAAACAGAGCAG
CTTCAGGTGCCAGAAAGATATCAAGCGTTCCTACTCCATCGAGGGAACCGCGTTGGTGTTTATATTGATGTGTAGCCGCA
GCTTTTGGCTTGGCGTACAAGATAATACAAGAGGAGTTTGAGATGAATACAAGAGAGGGAAGGAGGTTGAGATTACAACA
CGTATATTCTAACACCCTCCCTTAATCTCAACTAACCTAAGTTAAGATTATTCTTGAATTCTTCAAATGGTCTTGCTGGC
AAAGCTTTTGTAAAACCATCGGCCACTTGATCCTTGAAAGGAATAAACCGAATCTCAAGTTTCTTTGCTGCAACTCTTTC
TCGCACAAAGTGAAAATTAATTTCTATGTGCTTTGTCCTGGCATGAAATACT
>chr2A_606
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---------------------------------------------TAAAAGGAAAATGAAG---TATCTCATATATGCGG
ATTTGGTCTGGTCCCATCCCAGTGGACAAAACCAGCCGCTCTGCCGC-AAAAAAAACAAG--------------------
-------ACCGGCCG---GGCGTCGACAGCGAACGGTGCGGCGCAAGCAAGCAAGCAAAGGTGCAGTGGGTCCAAAAGCA
CCCGGTTTCCT-GGAAAACCAGCACCGGCAG-TCGCTTGTTTTGCTTCGTCTCGCCC--GTATATAACCCCGTCCGACTC
CCACTCTTCCT--------ACCATCAACACAAACAGGCATCAACTCACTGAGACAGTTCAACAAAATCAAACTAGCTCTG
TTCAACTTCGCAAGTCCACACAA-------------G----GATCACAAGTCAGTCTCCACTCTCCAGCAGTGCAGCAAG
AACAAGAAGC-GCAGGAG--AATCAATGGCTGGTCCGGCGAAGGCGTCGTGGATGGTGGCCATGAGCGTGGGCGCCGTGG
AGGCGCTCAAGGATCAGGCCGGGCTCTGCCGCTGGAACTATGCCCTCAGGTCCATCCACCGGGCT------GCCAAGGCC
A------ACGTCCGTGGGGGCGCCTCGCAGGGCACCAAGCAGCTTCCGGCCTCCGCGGTGGCTGTGGCGGAGAGGCGGCG
AGCGGAGAAGGCCGAGGAGGGGCTGAGGACCGTCATGTACCTCAGCTGCTGGGGCCCAAATTAGGAGTACTAGTAGCTTA
GGGATGTTGTGTTCGTTGCAGGTTGTGCTTATGC-------ACAACCCC---ATGATCGATTTGTAAATACAGCAAG---
--ATGATGATGATGA---AAATTTCGGC-------TATGAATTTATCT--CACCCT-CTTTGTCCATGTGCATCCATGAC
TAATTTTTGAAAGGCAAAAGCTTGATGCTTGTCAAAAGAG---GAACAATGTTCAGAGTTACA-----------------
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>chr2D_606
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---------------------------------------------TAAAAGGAAAATGAAG---TATCTCATATCTGCGG
GATTGGTCTGGTCCCATCCCAGTGGACAAAACCAGCCGCTCTGCCGC-AGA-AAAAACAAGACGGGGCGAGGTGGGCAGC
CACCTGCAACGGCCG---GGCGTCGACAGCGAGAGGAGCGGCGCAAGCAAGCAAAT---------GTGTATCCGGAAGCA
CCCGGTTTCCT-GGAATACCAGCACCGGCAG-CCGCTTGTTTTGCTTCGGCTCTCCC--GTATATAACCCCGTCCCACTC
CAACTCTTCCT--------ACCATCAACACAAACGAGCATCAGCTCACTGAGACAGTACAAGAAAATCAAACTAGCTCTG
TTCAACTTCGCAAGTCCACT--A-------------G----GATCACAAGTCAGTTTTCACTC-CCAGCAGCGCGGCAAG
AACAAGAAGTAT-AGGAG--AAGCCATGGCTGGTCCGGCGAAGGCATCGTGGATGGTGGCCATGAGCGTGGGCGCGGTGG
AAGCGCTCAAGGACCAGGCCGGGCTTTGCCGCTGGAACTATGCCCTCAGGTCCATCCACCGGGCA------GCCAAGGCC
A------ACGTCCGCGGCGGCGTCTCGCAGGGCAGCAAGCAGCTTCCGGCCTCCGCGTCGGCGGTGGCGGAGAGGCGGCG
AGCGGAGAAGGCCGAGGAGGGGCTAAGAACGGTGATGTACCTCAGCTGCTGGGGCCCAAATTAGGAGTACTAGTTGGTTA
GGGGTGTTGTGTTCGTTGCAGCTTGTGCTTATACTTATGCGACAACCCC---ATGACCG-TTTGTAAATACAGCACG---
--ATGATGATGATGATGAAAATTTCGGC-------TATGAATTTATAT--TACCCT-CCTTGTGCATGTTCTTCCATGAC
TATTTTTTGAAAGGCCAAA-------------------------------------------------------------
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>chr2A_667
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--------------------------------CAGTTGGTCTGCTGAAAGA-AAAAACAAGATGAGTCGTGGTGGGCAGC
TACCTGCACCG---G---GACGTCGGCAGCGAGGGATGCGGCGCAAGCAAGCAAAG---------GTGGATCCGAAAGCA
CCCGGGTTCCT-GGAAAACCAGCTCCCGCGG-CCGCCTGTTTTGCTCCGCCTCTCCC--GTATATAACCCCGTCTCACTC
CCACTCTTCTT--------CCCGTCGACACAAACGAGCATCAGTTCAGTT-------------CTTTCACAA---CCG--
--CAACTCCGCAAGTCCAGT--ACTACTAGACATACGCGGCGATCACAAGCCAGTCTCCACTCTCCAGCAAGGCATCAGG
ACCAAGAAGAA----GAG--AAGAGATGGCTGGTCCGGCGAAGGCGTCGTGGATGGTGGCCATGAGCGTGGGGGCGGTGG
AGGCGCTCAAGGACCAGGCCGGACTCTGCCGCTGGAACTACGCGCTCAAGTCCATCCACCGAGCTGCCAAGGCCAAGGCC
A------ACGTCCGCGCCGGCGGCTCGCAGAGCACGAAGCAGCTTCCGGCTTCCACGGCGGCCCTGGTGGAGAGGCGGCG
AGCGGAGAAGGCGGAGGAGGCGCTGAGGACGGTCATGTACCTCAGCTGCTGGGGACCCAATTAG----------------
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>chr2A_701
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-------------------------------------------------------------------CGAGGTGCGCAGC
CACTTGCACAGGGACGTCGACGTCGACAGCGGCAGATGCGGCGCAAGCAAGCAAAG---------GTGGATCTGAAAGCA
CCTGGTTTCCT-GGAAAACCAACGCCTGCAG-CCGCCTGTTTTGCTCCGGCTCTCCC--GTATATAACCCCGGCCCACTC
CCAA---TCCT--------CCCATCAACACAAACGAGCATCAATTCAGTGAGATAGTTCAGAAAACC------AGCTCTG
TTCTTTTAGCATA---CACA--A-------------G----GATCGCAAGTCAGTCTCCACTCTCCAGCAGCGCAGCAAG
AACAAGGAGG---AGGAG--GAGAGATGGCTGGTCCGGCGAAGGCGTCATGGATGGCTGCGACGAGCGTCGGCGCGGTGG
AGGCGCTCAAGGACCAGGCCGGGCTCTGCCGCTGGAACTATGCCCTCAGGTCCATCCACCGTGCA------GCCAAGGCC
A------ACGTCCGCGGCGGCGTCTCGCAGGGCACGAAGCAGCTTCCGGCA---------GCTGTGGCGGAGAGGCGGCG
AGCGGAGAAGGCCGAGGAGGGGCTGAGGACGGTGATGTACCTCAGCTGCTGGGGCCCAAATTAGAAGTACCAGTAGCTCA
GG------------------------------------------------------------------------------
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>chr2B_770
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---------------------------------------------------------------------------AAGCA
CCCGGTTTCCTTGGAAAACCAGCGCCCGTGG-CTGCCTGTTTTGCTCCGGCTCTCCCGTGTATATAACCCCGCCCCCCTC
CCACTCTTGCT--------CCCATCAACACAAACCAGCCTCAATTCAGCGAATCAGCTCTGTGCTTTCAGTA---CCA--
--CAACTTCGCAAGTCCACT--ACTACTATACACTTG----GATCACAATTCAGTATC--CTCGCCAGCAGCGAAGCAAG
AACA------AGGAGGAG--GAGAGATGGCTGCTCCGGCGAAGGCATCGTGGATGGTGGCCATGAGCGTGGGCGCCGTGG
AGGCCCTCAAGGACCAAGCCGGGCTCTGCCGCTGGAACTATGCCCTCAAGTCCATCCACCGGGCA------GCCAAGGCC
A------ACGTCTGCGGCGGCATCTCGCAGGGCACCAAGCAGCTTCTGGCCTCCGCGTCGGCCGTGGCGGAGCGGCGGCG
AGCGGAGAAGGCCGAGGAGGGGCTGAGGACCGTGATGTACCTCAGCTGCTGGGGCCCAAATTAGGAGTACTAGTAGCTTA
GGGGTGCTGTGTCCGTTGCAGTTTGTGCTTACGT------GACAACGCC---ATGATCG-ATTGTAAATACAGCACG---
--ATGATAATGATGA---AAATTTCGGC-------TATGAGTTTATATATCACCCT-CCCTGTCCATGTGCTTCTGTAAC
TATTTT--GAAAGGCCCAGTGTTGATGTTTGTCAAGAGAG---GAACAATGTTCAGAGTTGCATGGGGAGAGCAGCTCAG
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>chr2B_771
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----------------------------------------------------------------------------AGCA
CCCGGTTTCCT-GGGAAACCAGCGCCCGCGG-CCGCCTGTCTTGCTCCGGCTCTTCCGTGTATATAACCCCGGCCCCCTC
CCACTCTTGCT--------CCCATCAACACAAATCAGCGTCAATTCAGCGAGATAGTTCAAGAGGATCAGCTCTGCCG--
--CAACTTCGCAAGTCCACT--ACTGCCATACAAAAG----GATCACAATTCAGTATC--CTCGCCAGCAGCGAAGCAAG
AACAAGGAGGAGGAGGAG--GAGAGATGGCTGCTCCGGTGAAGGCGTCGTGGATGGTGGCCATGAGCGTGGGCGCCGTGG
AGGCCCTCAAGGACCAAGCCAGGCTCTGCCGATGGAACTACGCGCTCACGTCCATCCACCGGGCA------GCCAAGGCC
AGGACCAACGTCCGCGGCAGCGTCTCGCAGGGCCCCAAGCAGCTTCCGGCCTCCGCTGCGGCTGTGGCGGAGAGGCGGCG
AGCAGAGAAGGCCGAGGAGGGGCTGAGGACAGTCATGTCCCTCAGCTGCTGGGGGCCAAATTAGGGGTATTAGTAGCTTA
GGGGTGTTGTGTTCGTTGCAACTTGTGCTTT------TGCGACAACCCC---ATGATCG-TTTGTAAATACAGCACG---
--ATGATGTTGATGA---AAAATTCGGC-------TATGA----------------------------------------
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>chr2D_998
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----------------------GAGATGGCTGGTCCGGCGAAGGCTTCGTGGATGGTGGCGATGAGCGTCGGCGCCGTGG
AGGCGCTCAAGGACCAGGCGGGGCTCTGCCGCTGGAACTATGCGCTCAGCTCCATCCATCGGGCC------GCCAAGGCA
AAGGCCAACGTCCGCGGCGGCGTCTCGCAAGGCAAGAAGCAGCTTCCGGCCTTTGCGGCGGCCGTGGCGGAGAGGCGGCG
AGCAGAGAAGGCCGAGGAGGGGCTGAGGACGGTCATGTACCTCAGCTGCTGGGGCCCAAACTAGGAGTACTAGTAGCT-A
GAGGTGTTGTGTTCGTCGGAGCAAAGTAAGCAACCATGGCTGATTGCCCTTTCCCCACG-ATTGTAAGATACCATAATGA
TTATGATGATGATGA---AAATTTTGGCCTCAGTTTATGACTCTACAT--CACCCTACCTTGCCCTTGTGCTTCTGTGAC
TACTTTCCGAAAGGCCGAAGGCCAATCTTTATCAAAAGAGGCAGAAAAATGTTGAGAGTTGCACAGGCAGAG--------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------SSSS--------------S-
-S---SS-S--------------S---------------------------S---S----------------------S-
------------------S-------------------S--S--------------------------------------
-S----S-----S----------------S-S-------------------S-----------------S----------
----------SSSSSSSSS----------S--------S------------S---------------SS-----S-----
----------------------S-------------S----S------------------S-------------------
----------------SSSS------------------------------------------------------------
-------------------S--S---------------------------------------------------------
-------------------------------------------------------------------------------S
---------------S----S---------------------------------------------SS------------
---------S--------S--------------------------SS--S------------------------------
-------------------------S---------------------S----S---------------------------
--------------------S-------------S--------S--S--S----------------------S--SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_468
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------------------------------------------------CGGACTTCCCATACTCGCTC------------
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>reverse_2025
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------------------------GCGTTCCTACTCCATCGAGG------------------------------------
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