>input_sequence_85751
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------------------------------------------------ATGGAGCTGGCCGCTTCAGCTTCGGTGTCCGT
CTGCTCGGCGTACCACCACCTCTCAACGCCGGCTGAGGCCAACGACGACAGCACACGGTCCCAACCGCAGCTGCAGCGCC
GGAGGAAACAGGCCGCCGGCAGTGGCATCGGCGGGCTCCGGTCCCGGTGCCATGCTGTTCTGAAGCAGCAGAGGACGAGG
CTGTACATCCTCCGGCGGTGTGTCTCGATGCTGCTGTGCTGGAACGAGCACGACATGTCCGACTGA--------------
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>chr1D_1_TraesCS1D01G119900
ATGATCTGGCCATTCAATACAAAAACTCATTGTACATACAGCAATGATCAAACTATATACTACCTCCGCCCCAAAAAGTT
TGCTTTAAATTTATCAGAATGGATGTATCTCTAAGACAAGTTTTTGGGGGCGGAGGAGTAGTAGCCACCACAAATCAGGA
GCGAGATACAAGAGACTAAATTCCTACTACCTCCTACGACACATGCAAGAGTTGCATTATTAAC-AAAAAAAAAAGCATG
TAATAGTACCATTGCTTACTTTTGATTAAGACCACCTTCACAGCACCCATAATTGAGGGACAGAGCGCCTATGTGTTCCA
AATCTTCTTTCTATTTTAATCACCTCCAGGCTGTAGGTCATACGCCGCAACAGCATCATGTTTTCAACTTAAGTGGTGAT
TGGTGATGTGACCATATTTTTCTTTCAATATGCACGACTCTGCATCAGATCCGAGTCAGGCACCCTGTTTTTCTACTCTA
TCCACGTACTTGAGCTAGCCGAACGTCACCATTAGCTATAGCGCACTAATCAATA-TCATCTGTACTACAGACATATTAG
TGCCGAGTGCAGACAAACGTCTCCAAATCATTGCAGTAATACAATAGAATCATACATTCCAACTGACAGAAGCATCTATA
AATTAGTGATGAGAAGAAACAAAAGATGTACTATGTCACAAGTAATATAATCATACTTTTTTGAGTTTATAAATCATACT
TAAACAACACCAAGAAGAACAAACAAGTCCGTCTAGTGTTCTCAATCCGTTGGTTAGGGGGCTGGACGGAT--TAGAGAA
ACTAAACCGAGGGTGGGGTAGAACCGTCATTACACCTATCAATGTCGGCTTACAATAACGAGCCGTCGTAATCGTGTGGG
TTCGGCTCGGGCCATATAAAACACAGGCCCCTCTCCAGGTTCGCCACACCACGCTATATCCTCTGCTCTACTGCTACAGT
TC----TTCTCCCGCGACAAGTTCGTTTTCTCCTTCGAAATCGCATCCATGGAGCTGGCCGCTTCAGCTTCGGTGTCCGT
CTGCTCGGCGTACCACCACCTCTCAACGCCGGCTGAGGCCAACGACGACAGCACACGGTCCCAACCGCAGCTGCAGCGCC
GGAGGAAACAGGCCGCCGGCAGTGGCATCGGCGGGCTCCGGTCCCGGTGCCATGCTGTTCTGAAGCAGCAGAGGACGAGG
CTGTACATCCTCCGGCGGTGTGTCTCGATGCTGCTGTGCTGGAACGAGCACGACATGTCCGACTGAGCTCACACGAAGGC
CCGGTGGTTTTTGTACGGGCTGGGTCAGGGCCGGGCCTGTA--GACCGGCTCGGTCTGTAGGAAGGAATGGTAGAGTGTT
TGGTGTATCATGTTCCATACTTGTTTATTAACAATTGTCATGACATGAGTTTTTTTTTTAATCTGATGATGTGTAAGTGA
ATGGGAAATGTGATGACATGTGATGGAATTGGTTGCTTATACCAGTACAACTTCTGGTCTTGGATCACC--GGTTATCTT
TACCGTCAACCGTTAGG---TCTTCTTTTGTTCGCATAAATTTTGGAGGGATTC-----GATATGAATTTTGTAGGAAAA
TTCCTTTGAACCCTTTGATTCGTGGGAATGGATTCCTAGGATAGGAAGTAATCATTCGCATATCAAAGGAGAAATATA--
----------------------------------------------------------------------------TTAG
CCTAGACCCAATAAAAAAATTGATATCACATGACTCAGATGACATCTTCTTCTTTTCTTTATAGGAAAGTGAGATGTATG
TTATCACACTATTTTTCTACTCCCATGGTATTCCTATCATATGAACCAGATGAGGCATTTTTTCTGTTTCATCTCCCCCA
TTAACCGCCCCCCTCCCCCGCACGCGAATTGCACGCTAAAAACTAAAGAAAACCCTCGGTTAAAATTCAG--AAAAAATG
CATGCTCTCGTGAGCCTTAGTCATCCTCTCCCTTTCCTGCACTACCGCTCGAAGCGCCACCGCCGCCACCCAGTAGCAGG
AGACGGTTATGAAGGTGGAGAATCAGAATCGAACTCTGCATTCCTGACCGTCTTCCCTAACTCCTCCCCTAAATAAGGCG
CCCAGGACTTGAACTTAAAACTCGGATTTATAACAATTTGG--CTCAAGAGAGAGGAAGGAGGGGTGGATTCC-GTGGAG
GCGAAGGAGCGATAGACGAAGCCGCCGGACGAGGAAGCGTCCGCCGAGGCCAATCCAGCATCATCCGATTATGCATGCTC
TGGCTTTGTCCTCATCGAGTTTTCTTTCGTGGAGCCAGCAG
>chr1B_112
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-------------------------------TAAGACAAGTTTTTTGAGGCGGAGTAGTAGTAGCTACCACAAATCAGGA
GCGAGATACAAGAGACTAAATTCCTACTACCTCCTACGACACATGCAAGAGTTACACTATTAAC-AAAAAAGAA--CATG
TAATATTACCATTGCTTACTTTTGATTAAGACCACCTTCACAGCACCCATAATTGAGGGACAGAGCACCTTTGTGTTCCA
AATCTTTTTTCTATTTTAATCACCTCCAGGCTGTAGGTCATACGCCGCAACAGCATCATGTTTTCAACTTAAGTGGTGAT
TGGTGATGTGACCATATTTTTCTTTCAATATGCACGACTCTGCATCAGATCCGAGTCAGGCACCCTGTTTTTCTACTCTA
TCCACGTACTTGAGCTAGCCGAACGTCACCATTAGCTA--GCGCACTAATCAATAATCATCTGTACTACAGATATATTAG
TGCCGACTGCAGACAAACGTCTCCAAATCATTGCAGTAATGTAATAGAATCATAAATTCCAACTGACAGAAGCATCCATA
AATTAGTGATGAGAAGAAACAAAAAATGTACTATGTCACAAGTAATATAATCATACTTTTTTGAGTTTATAAATCAT---
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>chr1A_216
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-------------------------------------------------------ATTATTAACAAAAAAAAAA--CATG
TAATAGTACCATTGCTTACTTTTGATTAAGACCACCTTCACAGCACCCATAATTGAGGGACAGAGCGCCTATGTGTTCCA
AATC-TTTTTCTATTTTAATCACCTCCAGGCTGTAGATCATACGCCGCAACAGCATCATGTTTTCAACTTAAGTGGTGAT
TGGTGATGTGACCATATTTTTCTTTCAATATGCATGACCCTGCATCAGATCCGAGTCAGGCACCCTGTTTTTCTACTCTA
TCCACGTACTTGAGCTAGCCGAACGTCACCATTAGCTA--GCGCACTAATCAATAATCATCTGTACTACAGACATATTAG
TGCCGAGTGCAGACAAACGTCTCCAAATCATTGCAGTAATGTAATAGAATCATAAATTCCAACTGACAGAAGCATCCATA
AATTAGTGATGAGAAGAAACAAAAGATGTACTATGTCACAAGTAATATAATCATACTTTTTTGAGTTTATAAATCATACT
TAAACAACACCAAGAAGAACAAACAAGTCCGTCTAGTGTTCTCAATCCGTTGGTTAGGGGGCTGGACGGAT--TAGAGAA
ACTAAACCGAGGGTGGGGTAGAACCGTCATTACACCTATCAATGTCGGCTTACAATAACGAGCCGTCGTAATCGTGTGGG
TTCGGCTCGGGCCATATAAAACACAGGCCCCTCTCCAGGTTCGCCACACCACGCTATATCCTCTGCTCTACTACTACAGT
TG----TTCTCCCGTGACAAGTTCGTTTTCTCCTTCGAAATCGCATCCATGGAACTGGCCGCTTCAGCTTCGGTGTCCGT
CTGCTCGGCGTACCACCACCTCTCAACGCCGGCTGAGGCCAACGACGACAGCACGCGGTCCCAACCGCAGCTGCAGCGCC
GGAGGAAACAGGCCGCTGGCAGTGGCATCGGTGGGCTCCGGTCCCGGTGCCATGCTGTTCTGAAGCAGCAGAGGACGAGG
CTGTACATCCTCCGGCGGTGTGTCTCGATGCTGCTGTGCTGGAACGAGCACGACATGTCCGACTGAGCTCACACGAAGGC
CCGGTGGTTTTTGTGCGGGCTGGGTCAGGGCCGGGCCTGTA--GACCGGCTCGGTCTGTAGGAAGGAATGGTAGAGTGTT
TGGTGTATCATATTCCATACTTGTTTATTAACAATTGTCATGACATGAGTTTTTTTTTTAATCTGATGATGTGTAAGTGA
ATGGGAAATGTGATGACATGTGATAGAATTGGTTGCTTATACCAGTACAACTTCTGGTCTTGGATGGAATTGGTTATCTT
TACCGTCAACCGTTAGGCCTTCTTCTTTTGTTCGCATAAATTTTGCAGGGATTCAGAAGGATATGAATTTTGTAGGAAAA
TTCCTTTGAACCCTTTGATTCATGGGAATGGATTCCTAGGATAGGAAGCAATCATTCGCATATCAAAGGAAAAATATA--
----------------------------------------------------------------------------TTAG
CCTAGACCCAATAAAGAAATTGGTATCACATGACTCAATA---ATATTTTTCTTTTTTATAGG---AAGTGAGATGCATG
TTATCACACTATTTTTCTACTCCCATGGTATTCCTATCATATGTATCAAATGAGGCATTTTTTCTGTTTCATCTCCCCCA
TTACT-GCCCCCCTTCCCCGCACATGAATTGCACGCTAAAAACTAAAGAAAACCCTCAGTAAAAATTCTGGAAAAAAATG
CATGCTCTTGTGAGCCTTAGTCATCCTCTCTCTTTCCTGCGCTACTGCTCGAAGTGCCATCTCCGCCACCCCGTAGCAGG
AGACGGTTCTGAAGGTGGAGAATCGGAATTAGACTCTGCATTCCTGACCGTCTTCCCTAACTCCTCTCCTAAATAAGGCG
TCCAGGACTTGAACTTAAAACTCGGGTTTATAGCAATTTGGCTCGAGAGAGAGAGGAAGGAGGGGGTGGACCCTGTGGAG
GCAAAGGAGCGATAGACGGAGCCGCCGGACGAGGAAGTGTCCGTCGAGGCCAATCCAGCATCATCCGATTATGTGTGCTC
TGGCTTTGTCCTCTTTGAATTTTCTTTCCTGG---------
>chr1B_706
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-------------------------------------------------------------------TACAAATCATACT
TAAACAACACCAAGAAGAACAAACAAGTCCGTCTAGTGTTCTCAATCCGTTGGTTAGGGGGCTGGACGGATTATAGAGAA
ACTAAACCGAGGGT-----AGAACCGTCATTACACCTATCAATGTCGGCTTACAATAACGAGCCGTCGTAATCGTGTGGG
TTCGGCTCGGGCCATATAAAACACAGGCCCCTCCCCAGGTTCGCCACACCACGCTAT--CCTCTGCTCTGCTGCTGCTAC
AGTTGTTTCTCCCGCGACAAGCTCGTTTTCTCCTTCGAAATCGCAATCATGGAGCTAGCCGCTTCAGCTTTGGTGTCCGT
CTGCTCGGCGTATCACCACCTCTCAGCGCCGGCTGAGGCCAACGACGACAGCGCGCGGTCCCAACCGCAGCTGCAGCGCC
GGAGGAAACAGGCCGCCTGCAGTGGCATCGGCGGGCTCCGGTCCCGGTGCCATGCTGTTCTGAAGCAGCAGAGGACGAGG
CTGTACATCCTCCGGCGGTGTGTCTCGATGCTGCTGTGCTGGAACGAGCACGACATGTCCGACTGAGCTCACACGAAGGC
CCGGTGGTTTTTTTACGGGCTGGGTCAGGGCCGGGCCTGTATAGACCGGCTCGGTCTGTAGGAA-GAATGGTAGAGTGTT
TGGTGTATCATATTCCATACTTGTTTATTAACAATTGTCATGACATGAGTTTTTTTTT--ATCTGATGATGTGTAAGTGA
ATGAGAAATGTGATGACGTGCGATGGAATTGGTTGCTTACT--AGTACAATTTCTGGTCTTGGATCAC--TGGTTATCTT
TACCGTCAACCGTTAGGCCT-CTTCTTTTGTTCGCATAAATTTTGC-----------AGGATATGAATTTTGTAGGAAAA
TTCCTTTGAACCCTTTGGTTCGTGGGAATGGATTCCTAGGATAGGAAGCAATCATTCATATATCAAAAAAAATATATACT
CCATCTGTATCTCAACTCTAGTATAACTTTGTACAAAAGTTAATACATTAGACACTTATTTTAAACGGAGGAAGCATTAG
CCTAGACCCAATAAAAAAATTGGTATCACGTGACTCATTGAC---ATTTTTTTTCTTTATAGG---AAGTGAGATGCATG
TTATCACACTATTTTTCTACTCCCATGGTATTCCTATCATATGGACCAAATGAGGCATTTTTTCTGTTTCATCTCCCCCA
TTACCG---CCCCTCCCCCGCACGCGAATTGCACGCTAAAAACTAAAAAAAAACCTCGGTAAAAATTCTGGAAAAAA-TG
CATGCTCTCGTGAGCCTTGGTCATCCTCTCCCTTTCCTGTGCTACTGCTCGAAGCGCCACCGCCGCCACCCCGTAGCGGG
AGACGGTTCTGAAGGTGGAGAATCGGAATCGGACTCTGCATTCCTGACTGTCTTCCCTAACTTCTCCCCTAAATAAGGCG
CCCAGGACTTGAACTTAAAACTCGGGTTTATAGCAATTTGG--CGAGAGAGAGAGGAAGGAGGGGTGGATCCC-GTGGAG
GCAAAGGAGCGATAGACGGAGCCACCAGACGAGGAAGCGTCCGTCGAGGCCAATCCAGCATCATCCGATTATGTGTGCTT
TGGCTTTGTTCTCTTTGAGTTTTCTTTCCTGG---------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-S-------S---------S--------------
-----------------------------------------------------S--------------------SS----
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------S-------------------------------------------------------------------------
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--------------------------------------SS----------------------------------------
----------------------------------------SS------------S---------------------S---
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-S------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
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-----------S--------------------------------------------------------------------
--------------------------------------------------------------------S-----------
---------------------------------------------S----------------------------------
------------------------------------------------S---------------------S---------
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----------------------S--------------SSSSSS--S--S-------S-S--SSSSS----------S---
-------------------------------------------S----S-------------------------------
---S-S------------------------------------------------------S-------S-----------
----------------------------------------S----S-------------------------S--------
--------S---------------S------S------------------------------------------------
-------------------------S------S-----------SSS-----------------------S---------
--S---------------S------------------------S-----------------------------SS-----
-------------S-S------------S---SSSSSSSSS
>forward_82
--------------------------------------------------------------CCTCCGCCCCAAAAAGTT
TG------------------------------------------------------------------------------
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>reverse_2112
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-------------------------------AACTCTGCATTCCTGACCGT-----------------------------
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