>input_sequence_85730
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------------------------------------------------------ATGGATATCTTCAGCCGCTCCGCAGC
TGTGCTCTTCACCTCTTCTTCGGGCATGTATTCAACAGCGCCGTCCGTGATGTCATCCAGCCAGCCCTGGAGGTCCGACT
CGATCTCTCTTGTGATCGATTCATCAGATGCACGCACGACAAACTTGCATATCATCGTGGTTGTCTCGTCACCCAGATCA
ACATTTCGGCTGACCTCACTTGCACCGAAGATCATCATGCCCACAAACCCACCAAACCATGTCTTTGCAGCGTAA-----
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>chr4B_1_TraesCS4B01G094300
ACAGCCGCGTCCGCGCCCAGGTCATTGCTCCTTCCCCGCCTCCTCCTCACCGCGAGACTATCTTCCGGTTCCGGGCTCGC
TTCGACTCCCATGCAGCTCGCTCGCTGTCCAGAACAACTTGCCGAGTTCACGACGAGCAAGGCCGGCGCCTTGTTATGGG
GTAAGCGCTCGGCTGCAGGAGGCGGCGAGAGGTTGGTGGCGGCGACGGCGCCGCCGGGTGGTCGGGGCTCGGGAGGGAGT
TGGGAGTTCGCACTTCGCAGACCGCGCAGAGAGGGACAGACTAGAAAGAGAGGCCAGGTGGGCCATGCATGTCATAGGCC
GCACGGACAGACAAGTAGGGTTCATTTCGCCTGACCCAACAGTCAGTGAGCACGAATCTAAAAAAAACAGTCAGTGAGCA
TAATAGGAGAAGGAATTAATTCAGCAC-----ATGGATGGGATTTCCTTCAAATACTCCCTCCGTTTCAATAATGCTAGA
TACATCCATTTGAGCAACAAGAGGGAGTACTATTGTACAAAAGATTCACAACAAATTGGGAAGGAAAAAATCATTCTCAT
TCACACTAATGCTTTGGGCTATGTTACAAAAAGAAAGAAACATCATTCGTCATACAACAATATCTGTGAATACAATGAAC
AAATCAGGAAATCGGCAGGATCATACATACTCAAAAATCAAAATGCCGGCCGGCTGAAAAGG--AAATCAAAATGTGGCT
TGAGGAAAAGGCGGATACAAAATTATACATGTGGAGCGCAAACCAGCCAGG-------CTCACTGTGCCTTCATGGCTTT
CTCCTTGCAGAGCTGGTGCCACTCCTGGAGCACGGCTGCTTGGAGCGCACGGTGCTCGGCTTCCTCCGCCGTGAGCTTGG
AGAGCGTCGAGGGGCCCTTGGGGTTCCCAAACCCGTCCAACTCCTCGCTCTGCTTCCTCTCCTCTTCCTCTTCTTGCTCG
GTTTTCGCGGGCGGCATCTTAGGTTTGGCTGCCTTGAGTAGCGCTATCCTCTCCATGGATATCTTCAGCCGCTCCGCAGC
TGTGCTCTTCACCTCTTCTTCGGGCATGTATTCAACAGCGCCGTCCGTGATGTCATCCAGCCAGCCCTGGAGGTCCGACT
CGATCTCTCTTGTGATCGATTCATCAGATGCACGCACGACAAACTTGCATATCATCGTGGTTGTCTCGTCACCCAGATCA
ACATTTCGGCTGACCTCACTTGCACCGAAGATCATCATGCCCACAAACCCACCAAACCATGTCTTTGCAGCGTAACACAA
CTGTGGAAGATACATGTGTTATATAACCTTACAAAAATGTTAACTCTGCACAGGATAGAATCAAGACCATGTCATGACAC
CGTCCAAGTGACTATCAGTCAAATGCTTACCTGGAACCCAGCAACTGTTCGGATGAAATGAGAGCAGACTTGATGGAAGG
GCTTGGAATAAATTGACTTCAACCCACTGAGGAAAGGAGAGCTATCATACTGCTGAGCTGCAGTGGCCTTGAAACCACTA
CCTTCATATGTGTATGTGCCAGTGCACTCAACCATGGCTGGCAAGCTTGGCCATAGACGAAAATACTCAACTGGAGAGCA
TTCATATGGCAAGAGAAGTTCAGCGAGAGGGATCTTGTAGGGCTGACACCGTAAAACAACCGGCTCCCCAAGCTCTGGCC
GGAGCGCGCGCTTCTGCCTCGTCATTTGTGAGTCCTCTTCTGCATAATCTCCTTCATAGTCTGCCGATCCTCCACTTCCG
TAGAATGGGTAATACAGGACTTGAACCCAGAGAGAGCATCTCTCAAAATGTGAAACTCCCACAGTGACACTACTTTGGAC
TGGATCCTGCAGAATTGACAAAGCATTTTCCAAATAAATTAGATGCAAATATGGATTAGCCAATCTGAGATGGCAGTACT
TACCCAATGATATAA-----------------------------------------------------------------
------------------------------------------------------------TATTTATTATCACTATTCTA
TTTTTATCAATTGCCCACATTTTTTAGCGCAACTCGTCTGGAAACAAGATACTGTCACTAGTAGTTAAGTTACTTGAAAG
CCGCCGCGATGCTAGA-----TGGCTCTTTGAAAATCACTTATATTTAACATCATGACCATGATAGTGGATTTCATAGTC
TCCACTACCACATTATATCTGGTGTGCAATATAATGTGAGCTCAACTGGCTAGACAGGTATACACTACATTGGGAGGTA-
TGGTCTTTAAATTTTGCCAGGAAATAGATTGAGAAGTTCATTAGCTAAGGAAGAAAATCTTTCACTGTAAACTATATTCA
AATAAT
>chr4D_1
ACAGCCGCGTCCGCGCCCAGGTCATTGCTCCTCCTCCGCCTCCTCCTCGCCGCGAGACTATCTTCCGGTTCCGGGCTCGC
TTCGACTCCCATACAGCTCGCTCGCTGTCCAGACCAGCTTGCCGAGTTCGCGACGAGCAAGGCCGGCGCCTTGTTATGGG
GTAAGCGCTCAGCTGCAGGAGGCGGCGAGAGGTTGGTGGCGGCGACGGCGCCGCCGGGTGGTCGGGGCTCGGGAGGGAGT
TGGGAGTTGGCACTTCGCAGACCGCGCAGCGAGGGACAGACTAGAGAGAGAGGCCAGGTGGGCCACGCATGTCATAGGCG
GCACGGTCAGACAAGTAGGGTTCATTTCGCCTGACCCAACAGTCAGT----------------------------GAGCA
TAATAGGAAAAGGAATTAATTCAGCACCTAAAATCGATGGGATTTCCTTCAAAA--------------------------
----------------------------ACTGTCGTACGAAAGATTCACAACAAATTGGGGAGGAAAAAATCATTCTCAT
TCACACTAATGCTTTGAGCTATGTTACAAAAAGAACGAAACAT-------GGTACAACAATATCTGTGAATACAATGAAC
AAATCGGGAAATCGGCAGGATCATACATACTCAAAAATCAAAATGTCAGCCGGCTGAAAAAG--AAATCAAAATGTGGC-
TGAGGAAAAGGCGGATACAAAATTATACAGGTGG----------AGCCAGG-------CTCACTGTGCCTTCATGGCTTT
CTCCTTGCAGAGCTGGTGCCACTCCTGGAGCACGGCTGCTTGGAGCGCACGGTGCTCGGCTTCCTCCGCCGTGAGCTTGG
AGAGCGTCGAGGGGCCCTTGGGGTTCCCAAACCCGTCCAACTCCTCACTCTGCTTCCTCTCCTCTTCCTCTTCTTGCTCG
GTTTTCGCAGGCGGCATCTTAGGTTTGGCTGCCTTGAGTAGCGCTATCCTCTCCATGGATATCTTCAGCCGCTCCGCAGC
TGCGCTCTTCACCTCCTCTTCGGGCATGTATTCAACAGCTCCGTCCGTGATGTCGTCCAGCCAGCCCTGGAGGTCCGACT
CGATCTCTCTTGTGATCGATTCATCAGATGCACGCACGACAAACTTGCATATCATCGTGGTTGTCTCGTCACCCAGATCA
ACATTTCGGCTCACCTCACTTGCACCGAAGATCATCATGCCCACAAACCCACCAAACCATGTCTTTGCGGCGTAACACAA
CTGTGGAAGATACATGTGTTATA--ACCTTACAAAAATGGTAACTCTGCACAGGATAGAATCAAGACCATGTCATGACAC
CGTCTAAGTGACTATCAGTCAAAAGCTTACCTGGAACCCAGCAACTGTTCGGATGAAATGAGAGCAGACTTGATGGAAGG
GCTTGGAATAAATTGACTTCAACCCACTGAGGAAAGGAGAGCTATCATACTGCTGAGCTGCAGTGGCCTTGAAACCACTA
CCTTCATATGTGTATGTGCCAGTGCACTCAACCATGGCTGGCAAGCTTGGCCATAGACGAAAATACTCAACTGGAGAGCA
TTCATATGGCAAGAGAAGTTCGGCGAGAGGGATCTTGTAGGGCTGACACCGCAAAACAACTGGCTCCCCAAGCTCTGGCC
GGAGCGCGCGCTTCTGCCTCGTCATTTGTGAGTCCTCTTCTGCATAATCTCCTTCATAGTCTGCCGATCCTCCACTTCCG
TAGAATGGGTAATACAGGACTTGAACCCAGAGAGAGCATCTCTCAAAATGTGAAACTCCCACAGTGACACTACTTTGGAC
TGGATCCTGCAGAATTGACAAAGCATTTTCCAAATAAATTAGATGCGAATATGGATTAGCCAATCTGAGATGGCAGTACT
TACCCAATGATATAA-----------------------------------------------------------------
------------------------------------------------------------TATTTATTATCACTATTCTA
TTTTTATCAATAGCCCACATTTTTTAGCGCAACTCGTCTGGAAACAAGATACTGTCACTAGTAGTTAAGTTACTTGAAAG
CCACCGCAATGCTAGATGGCCTGGCTCTTAGAAAATCACTTATATTTAACATCATGATCATGATAGCGGATTTCATAGTC
TCCACTACCACATTATATCTGGTGTGCAATATAATGTGAGCTCAACTGGCTAGACAGG--TGTACTACATTGGGAGGTGG
TGG-CTTTAAATTTTGCCAGGAAATAGATTGAGAAGTTCACTAGCCAAGGAAGAAAATCTTTCACTGTAAACTATATTCA
AATAA-
>chr4A_1
ACAGCCGCGTCCGCGCCCAGGTCATTGCTCCCCCTCCGCCTCCTCCTCGCCGCGAGACTATCTTCCGGTTCCGGGCTCGC
TTCGACTCCCATACAGCTCGCTCGCTGTCCAGACCAACTTGCCGAGTTCGCGACGAGCAAGGCCGGCGCCTTGTTATGGG
GCAAGCGCCCGGCCGCAGGAGGCGGCGAGAGGTTGGTGGCGGCGACGGCGCCGCCGGGTGGTCGGGGCTCGGGAGGGAGT
TGGGAGTTCGCACTTCGCAGACCGCGCAGCGAGGGACAGACTAGAGAGAGAGGCCAGGTGGGCCACGCATGTCATAGGCG
GCACGGTCAGACAAGTAGGGTTCATTTCGCCTGACCCAACAGTCAGT----------------------------GAGTA
TAACAGGAAAAGGAATTAATTCAGCACCTAAAATCGATGGGATTTCCTTCAAAA--------------------------
----------------------------ACTATCGTACGAAAGATTCACAACAAATTGGAGAGGAAAAAATCATTCTCAT
TCACACTAATGCTTTGAGCTATGTTACAAAAAGAACGAAACATCGTTTGTGGTACAACAATACCTGTGAATACAATGAAA
AAATCAGGAAATCGGCAGGATCATACATACTCAAAAATCAAAATGTCGGACGGCTGAAAAAAATAAATCAAAATGTGGCT
CGAGGAAAAGGCAGGTACAAAATTATACAGGCGG----------AGCGCAGACCAGGCCTCACTGTGCCTTCATGGCTTT
CTCCTTGCACAGCTGGTGCCACTCCTGGAGCACGGCTGCTTGGAGGGCACGGTGCTCGGCTTCCTCCGCTGTGAGCTTGG
AGAGCGTGGAGGGGCCCTTGGGGTTCCCAAATCCGTCCAACTCCTCGCTCTGCTTCCTCTCCTCTTCCTCTT---GCTCG
GTTTTCGCGGGCGGCATCTTAGGTTTGGCTGCCTTGAGTAGCGCTATCCTCTCCATGGATATCTTCAGTCGCTCCGCAGC
TGTGCTCTTCACCTCCTCTTCGGGCATGTATTCAACAGCGCCGTCCGTGATGTCGTCCAGCCAGCCCTGGAGGTCCGACT
CGATCTCTCTTGTGATCGATTCATCAGATGCACGCACGACAAACTTGCATATCATCGTGGTTGTCTCGTCACCCAGATCT
ACATTTCGGCTCACCTCACTTGCACCGAAGATCATCATGCCCACAAACCCACCAAACCATGTCTTTGCGGCGTAACACAA
CTGTGGAAGATACATGTGTTATA--ACCTTACAAAAATGGTAACGCTGCACAGGATAGAATCAAGACCATGACATGACAC
CGTCTAAGTGATTATCAGTCAAATGCTTACCTGGAACCCAGCAACTGTTCGGATGAAATGAGAGCAGACTTGATGGAAGG
GCTTGGAATAAATTGACTTCAACCCACTGAGGAAAGGAGAGCTATCATACTGCTGAGCAGCAGTGGCCTTGAAACCGCTA
CCTTCATATGTGTATGTGCCAGTGCACTCAACCATGGCTGGCAAGCCTGGCCATAGACGGAAATACTCAACTGGAGAGCA
TTCATATGGCAAGAGAAGTTCGGCGAGAGGGATCTTGTAGGGCTGACACCGTAAAACAACCGGCTCCCCAAGCTCTGGCC
GGAGCGCGCGCTTCTGCCTCGTCATTTGTGAGTCCTCTTCTGCATAATCTCCTTCATAGTCTGCCGATCCTCCACTTCCG
TAGAATGGGTAATACAGGACTTGAACCCAGAGAGAGCATCTCTCAAAATGTGAAACTCCCACAGTGACACTACTTTGGAC
TGGATCCTGCAGAATTGACAAAGCATTTTCCAAATAAATTAGATGCAAATATGGATTAGCCAATCTGAGATGGCAGTACT
TACCCAATGATATAATACTCCCTCCGCCCGGAAATACTTGTCACCAAAATGAATAAAAGAGGATGTATCTAGACGTCTTT
TAGTTCTAGATACATCCCTTTCTATCCATTTTGATGACAAGTATTTTCGGACGGGGGGAGTATTTATTATCACTATTCTA
TTTTTATCAATAGCCCACAT-TTTTAGCGCAACTCATCTGGAAACAAGATACTGTCACTGGTAGTTAAGTTACTTGAAAG
CCGCCGCAATGCTGGATGGCCTGGCTCTTTGAAAATCACTTATATTTAACATCATGATCAT-------------------
---------------TATCTGGTGTGCAATATAATGTGAGCTCAACTGGCTATACAAG--TATACTACATTGGGAGGTGG
TGGTCTTTAAATTTTGCCAGGAAATAGATTGAGAAGTTCACTAGCCAAGGAAGAAAATCTTTCACTGTAAACTATATTCA
AATAAT
>SNPs
--------------------------------S-S-------------S-------------------------------
------------S--------------------S---------------S------------------------------
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-----------------------------S---------------S-------------------S-------------S
------S----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
--------S-------------------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S---------------------S-------------------
----------------S------------------S--------S--S--SS----------------------------
---------------------------------------------S--------------S-------------------
-----------------------------S----SSSSSSSSSS------------------------------------
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---------------S--------------------------------------S-------------------------
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-----------S--------------------------------------------------------S-----------
-----------------------SS--------------S----------------------------------------
----S---------------------------------------------------------------------------
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---------------------S----------------------------------------------------------
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-----------S--------------------------------------------------------------------
-------S-------------------------------------------------S--------S-------------
----------------------------------------------------------SS--S---------------S-
----------------------------------------S----S----------------------------------
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>forward_371
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-------------------------------TGACCCAACAGTCAGTGAGC-----------------------------
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>reverse_1212
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-----------GACCTCACTTGCACCGAAGA-------------------------------------------------
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>forward_372
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--------------------------------GACCCAACAGTCAGTGAGCA----------------------------
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>reverse_1622
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---------------------AGCGAGAGGGATCTTGTAGG---------------------------------------
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