>input_sequence_85723
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------------------------------------------------------ATGGAGGGAACCATGAAGAACGGCGC
CAGGGTGATCAAGGGGAAGGTGGCGATGGCGTACTCCAAGTACGCCGGCAAGGCCCAGGTCAAGCCTGCCCCGAGCGTCA
CTACCGCACGCGCCTACCAGCCCAGGTACCCTTCTTCCATCGACGCCACCGCGAGCGCCCCCTACGCCGCGGCCGGTGAT
GTCGACGAGAGGGCCACGGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAGACGATGATGAGTTAG-----
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-------------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G426100
CTGCATGCACTTGCTAGTGGGCGTCCGTGTCTCTAGCCCTATCGTTAGTTTAGTTTCTGGAAACGTCTTGTTTCCTCATT
CGTGACTCGTGTACGTGCAACTGGCCTGCGTCGATGGATTGCTTGACACTCCATCCGTATCAAAATATAAAAGTTTTTAT
AGGCTAGAATGTTTAATATTTTGGTACAGA--------------------------------------------------
---------------------------------------------------------------GTCAGGATACAAGATGA
AATACCCTAAAAAAAGGATACAAGATGAAATTAACCTGATAGTCGTAGCTAGTCACAGGTTCAGGCTAGTACATCCAGCT
CTTGCTTATTTAGTTATTTCTCTTCCTTAGCCTCAACACCATGTACATCCAGCTCTTGCTTATTTAGTTATTTCTCTTCC
TTAGCTTCGTGCAACTGTGGCTTGTAAGATGCATCATACACGTACAGAACCTACAACAACTACACGAGGAGTTGATGGAT
GATTCACAGGGGATAGAGAGGAATCAGGAACCTGATGAGGATAACATTCGGAGCGCATACAGAATATCCGAAGCGACGAT
TTTCTCTCTCTGATCTGGAAAGGGCGAGAGGGCGGCGAAGAACCTTGGCAAGCATGTGCTCGTGCGTACGTGTATTTTTG
T----CACAAGACCAACCGT-------------------------ATATTATCATGGTGCACTGCTAGTCTGCTAGATGC
AATCATACAGACCACAAACCAGCTTAGGTTTCGTTGGGTAACACTTCCTCGTGCCACTTT-----GCACTGGACCCTCCC
AAAGCACGGGAATCTCTTGTCAGTGACACCTCCCAGATCCACTTTGCAGGAGCTAAGTTTCGTCGA-TGCACGCATGTTC
ATTATCCAT-----TGGCATCT-AAAGCCAAGATGTGAAATGGAATGGTATAGTCTTCAGTTTGTCTACCTATCTCATGC
--ACAAACCAGTAT--AAAAGGGG-T-AGCCACCTCTCCGGCG---------TTCCAGCATCGCAAAGCAAAGGCACACA
CAACACAAGTGCGCAGCCACAGAGCTTAGGCAGGATATAAAACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGC
CAGGGTGATCAAGGGGAAGGTGGCGATGGCGTACTCCAAGTACGCCGGCAAGGCCCAGGTCAAGCCTGCCCCGAGCGTCA
CTACCGCACGCGCCTACCAGCCCAGGTACCCTTCTTCCATCGACGCCACCGCGAGCGCCCCCTACGCCGCGGCCGGTGAT
GTCGACGAGAGGGCCACGGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAGACGATGATGAGTTAGATGAG
CTCCGTCGT---------GGCTGGTCAGGTCGGTCCAGGCTCCGGGAGAGGTTTTATATTTG--ATGG-AACATCTTCTG
GGTAGCCATGGATATATACA---TACATCTGTCTA----AGTGGTACACCATGTACTTTTCCTTC--TTT-TTTCTCT-C
CTTTTGC--AACTTCAGTTTGACCATAAGAGTGGGAAGAAAGGGATGAT---------------AACATAATCCTCATTT
CTGTAAAAAT----GCTGCGATGTGAATATATGATCCTTCATCAAA----GTGGAGTTTGTGTG-------CCGTTCATT
TTAGTTT--GCCCGACAGTTCATCTCGACCGTATAAAGGATCTTAAAATTTCAGTTCCTT-TTTGGATGTCGAGAGCTCC
TTTACAAGTGCCGTATCAAAATACAGTAGTAAAAATCATTTCGAAACATCACATCTTGTTTTTGCTTGAAACTATAAAAA
TAAGCAATCGTCTGGTTCCCATCCAAATCCACC-GTTTGGATGAAGCACCTTACTTAAACCAGATTTTTAATAGGCTTTC
CCTCTACATATGGATTATCACTGGTAAATATTTATATAT-----------------------------------------
----------------AGCTAATGAGCTCGCCCATGCACCGGCCGGATATAATTCTTCGAGTTGGAAAGGCGTGGAAGAC
TAATCGAGGAGTACTCGTAGCCCCTGCGTCATCCTCACTAGGGCGGCGGCGCATCCCCACCCACTCAAGGCCTCCACCCC
GTGCTTCCTCTCCCCTCGTCGCCGCTCCATGGCCTTCGCCGGGCAAAGC-------CCATGCGGATCCGGCGCCGGCTGG
GCTCTGACGTCCCTAGGGCGGCTAGTCGTCGTGTGGGGGCTCTTGCCGCGGCAGACGGCGCGACGCTCCTCCATGCGTGT
CGCGGGTGCCTA-GGGTGGCGGGCAGACGGTGGTGGCTCCGGTGGTGGAGCCCCGTACCCCTCGTGTCGCCTCCCCGAGC
GGGGCGACCGGGGCGGCCTCTCCTTCCCTCGCCACCTAAGCCCCCTCCCACCCCCTTCCTGTCGCTGCCGCCGACGGGG
>chr3A_2
-TGCATGCACTTGCTAGTGGGCGTCTGTGTCTCTAGCCCTATCGTTAGTTTAGTTTCTGGAAACGTCTTGTTTCCTCATT
CGCGACTCGTGCACGTGCAACTAGCCTGCGTCCATTGATTGATTGATTCTCCATCCGTATCAAAATATAAGAGTTTTTAG
AGGCTAGAATGTCTAATATTTTGGTACAGACGTAGTATCATGTTGCCATTGGTACATAAAAGCTCTTACAACACATGGGC
AGCTAAAAGCTTAGACGTGATCAGACTATTCCGACTGAAAAACAAAGTAATCGTTAGTCCATAGTCAGGATACAAGATAA
AATACCCTAAAAAAAGGATACAAGATGAAATTAACCTGATAGTCTTAGCTAGTCACAGGTTCAGGCTAGTACAGCCAGCT
CTTGCTTATTTTGTTATTTCTCTTCCTTAGCCTCAACACCATGTATGTTAAGTTGTTAAGCGTCGTCCCCA---------
--------GTGCAACTGTGGCTTGTAAGATGCATCATACACGTACAGAACCTACATTAACTACACGAGGTGGTGCTGGAT
GATTCACAGGGGATAGAGAGGAATCAGGAACCTGATGAGGATAACATTCGGAGCGCATACAGAATATCCGAAGCGACGAT
CTTCTCTTTGTGATCTGAAAAGGGCGAGAGGGCGGCAAAGAACCTTGGCAAGCATGTGCTCGTGCATACGTGTATTTTTG
T----CACAAGACCAACCGT-------------------------ATATTATCTTGGTGCACTGCTAGTCTGCTAGAAGC
AATCATACAGACCACAAACCAGCTTAGGTTTCGTTGGGTGACACCTCCTCGTGCCACTTTACTTAGCACTGGACCCTCCC
AAAGCACGGGAATCTCTTGTCAGTGACACCTCCCAGATCCACTTTGCCAGAGCTACATTTCCTTGGGTGCACGCATGTTC
ATTATCCTATCCTATGGCATCACAAAGCCAAGAAGTGACATGGAATGGAATACTCTTCAGTCTGTCTGCCTATCTCACGC
--ACTAACCAGTAT--AAATGGGG-T-AGCTACCCCTTCGT---------CATTCCAGCGTCGCAAAGCAAAGGCACACA
CAACACAAGTGCTTAGCCACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGC
CAGGGCGATCAAGGGGAAGGTGGCGATGGCCTACTCCAAGTACGCCGGCAAGGCCCAGGCCAAGCCTGCCCCTAGCGTCA
CTACAGCACACGCCTACCAGCCCAGGTACCCTTCTTCCATCGACGCCACCGTGAGCGCCCCCTACGCCGCCGCCGGTGAT
GTCGACGAGAGGGTCACGGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACAAGCAGAAGATGATGAGTTAGTTGAG
CTCCATCAT---------GGCCGGTCAGGTCAGTCCAGGCTCCGGGAGAGGTTTTATATTTG--ATGG-AACATCTTCTG
GGTAGCCATGGATA----CA---TACATGTGTCTA----AGTGGTATACCATGTACTTTTCC--CTTTTC---CCCCT-C
CTTTTGC--AACTTCACTTTGTCCATAAGAGTGGGAAGAATGGGATAAT---------------AACATAATCCCCATTT
CTGAAAATAT----GCTCGGATGTCA--ATATGATCCTTCATCAAA----GTTGAGTTTGTGTG-------TTGTTCATT
TTTGTTG---CCCGACAGTTCATCTCGACTGTGTAAAGGATCTTAAAATTTCAGTTCATT-TTTGGATGTCGAAAACTCC
TTTACAAGTGGCGTAACAAAATAGTAA---AAAAATCATTTACAAACATTCCATCTTGTTTTTGCTTGAAACTGTAAAAA
TAAGCAATCGTCTGGTTCCCATCCAACTCCACC-GTTTGGAGGAAGCACCATACTTAAACCAGATTTTTAATA-------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3B_376
--------------------------------------------------------------------------------
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--------GTGCAACTGTGGCTTGTAAGATGCATCATACACGTACAGAACCTACAACAACTACACGAGGAGTTGATGGAT
GATTCACAGGGGATAGAGAGGAATCAGGAACCCGATGAGGATAACATTCGGAGCGCATACAGAATATCCGAAGCGACGAT
CTTCTCTCTCTGATCTGGAAAGGGCGAGAGGGCGGCAAAGAACCTTGGCAAGCATGTGCTCGTGCATA------------
-----------------CGT-------------------------ATATTATCATGGTGCACTGCTAGTCTGCTAGATGC
AATCATACAGACCACAAACCAGCTTAGGTTTCGTTGGGTGACACCTCCTCGTGCCACTTT-----GCACTGGACTCTCCC
ACAGCACGGGAATCTCTTGTCAGTGACACCTCCCAGGTCCACTTTGCCGGAGCTAAGTTTCGTCGA-TGCACGCGTGTTC
ATTATCCAT-----TGGCATCT-AAAGCCAAGATGTGAAATGGAATGGAATAGTCTTCGGTCTGTCTACCTATCTCACGC
--ACAAACCAGTAT--AAAA-GGGGT-AGCCACCTCTCCGG---------CGTTCCAGCATCGCAAAGCAAAGGCAGACA
CAACACAAGTGCGTAGCCACAAAGCTTAAGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGC
CAGGGTGATCAAGGGGAAGGTGGCGATGGTGTACTCCAAGTACGCCGGCAAGGCCCAGGTTAAGCCTGCCCCGAGCGTCA
CTACAGCACGCGCCTACCAGCCCAGGTACCCTTCTTCCATCGACGCCACTGCGAGCGCCCCCAACGCCGCGGCCGGTGAT
GTCGACGAGAGGGCCACCGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAGACGATGATGAGTTAGATGAG
CTCCGTCGT---------GGCCGGTCAGGTCGGTCCAGGCTCCGGAAGAGGTTTTATATTTG--ATGG-AACATCTTCTG
GGTAGCCATGGATGTATACA---TACACGTGTCTA----AGTGGTACACCATGTACTTTTCCTTC--TTTCTTTCTCT-C
CTTTTGT--AACTTCAGTTTGACCATAAGAGTGGGAAGAATGGGATGAT---------------AACATATTCCCCATTT
ATGAAAAAAT----GTTGGTATATGAG-ATATGATCCTTCATCAAATTAAGTGGAGTTTGTGTG-------CCGTTCATT
TTAGTTG--GCCCGACAGTTCA-CTC------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3B_376
--------------------------------------------------------------------------------
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--------GTGCAACTGTGGCTTGTAAGATGCATCATACACGTACAGAACCTACAACAACTACACGAGGAGTTGATGGAT
GATTCACAGGGGATAGAGAGGAATCAGGAACCTGACGAGGATAACATTCGGAGCGCATACAGAATATCCGAACCGACGAT
CTTCTCTTTGTGATCTGGAAAGGGCGAGAGGGCGGCAAAGAACCTTGGCAAGCATGTGCTCGTGCATACGTGTATTTTTG
T----CATAAGACCAACCGT-------------------------ATATTATCATGGTGCACTGCTAGTCTGCTAGATGC
AATCATACAGACCACAAACCAGCTTAGGTTTCGTTGGGTGACACCTCCTCGTGCCACTTT-----GCACTGGACCCTCCC
AAAGCACGGGAATCTCTTGTCAGTGACACCTCCCAGATCCACTTTGCCAGAGCTATGTTTCGTTGGGTGCACGCATGTTC
ATTATCCTATCCCATGGCATCAAAACGCCAAGAAGTGACATGGAATGGAATACTCTTCAGTCTGTCGGCCTATCTCACGC
GCACTACCTAGTAT--AAATGGGG-T-AGCTACCGCTTCGT---------CATTCCAGCATCGCAAAGCAAAGGCACACA
CAACACAAGTGCGCAGCCACAAAGCTTAAGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGC
CAGGGTGATCAAGGGGAAGGTGGCGATGGCGTACTCCAAGTACGCCGGCAAGGCCCAGGTCAAGCCTGCCCCGAGTGTCA
CTACCGCACGCGCCTACCAGCCCAGGTACCCTTCTTCCATCGACGCCACCGCGAGCGCCCCCTACGCCGCGGCCGGTGAT
GTCGACGAGAGGGCTACGGCGTTCATACTGTCCGTCCGAAAGCACTTCAAGAACGAGCAGACGATGATGAGTTAGATGAG
CTCCGTCGT---------GGCCGGTCAGGTCGGTCCAGGCTCCGGGAGAGGTTTTATATTTG--ATGG-AACATCTTCTG
GGTAGCCATGGATATATACA---TATATGTGTCTA----AATGGTACACCATGTGCTTTTCCTCTTTTTT-TTTCTCT-C
CTTTTGT--AACTTCAGTTTGACCATAAGAGTGGGAAGACAGGGAAGAT---------------AACATAATCCCCATTT
CTGTAAAAAT----GCTGCGATGTGAATATATGATCCTTCATCAAA----GTGGAGTTTGTGTG-------CCGTTCATT
TTAGTTT--GCCCGACAGTTCATCTCGACCGTATAAAGGTTCTTAAAATTTCAGTTCCTAATTTGGATGTTGAGAACTCC
TTTACAAGTGCCGTATCAAAATACAGTAACAAAAATCATTTCGAAACATTACATCTTGTTTTTGCTTGAAACTGTAAAAA
TAAGCAATCGTCTGGTTCCCATCCAACCCCACC-GTTTGGATGAAGCACCTTACTTAAACCATTTTTT-AATAGGGTTTC
CCTCTACTTATGGATTATCATTGGTAAATATTTATATAGCTAGGTTATCTGAAATGTGCTCTCGCAAAAAAAAAGGTTAT
CTGAAATGTGATAACGAGATAATGAGCTCGCCCATGCACTGGCCGGATATAATTTTCCCAGTTGGAAAGGCGTGGAGGAC
TGATCGATGAGTACTCGTAGCCCCTGCGTCATCCTCACTAGGGCGGCGGCGCATCCCCACCCACTCAACGCCTCCTCCCC
ATGATTCCTCTCCCCTCGCCGCCGCTCCATGGCCTTCACAGGCTCGGCTCTGGCGTCCAAGCGGATCCGGCGCCGACAAG
GCTTTGGCGTCCCTGGGACGGCTAATCGTCAAGTGGGGGCTCTTTCCGCGGCCGATGGCGCGACGGTCCTCCATGCATAT
TGCAGGTGCCTTGGGGTGGCGGACGGACGGTGGCGGCTGCAGTGATGGAG------------------------------
-------------------------------------------------------------------------------
>chr3D_399
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------CATCATACGTGTACAGAACCTACAACAGCAACACAAGGAGTAGATGGAT
GATTCACAGGGGATAGAGAGGAATCAGGAACCTGATGAGGATAACATTCGGAGCACATACAGAATATCCGAAGGGACGAT
CTTTTCTTTCTGATCTGGAAAGGGCGAGGGGGAGGCAAAGAACCTTGTCAAGCATGTGCTCGTGCAACGTGTTGTATCAC
ACAAACACAACACCTACCGT-------------------------ATATTACCATGGCGCACA-----------AGATAC
AATCATACAGACCTCAAAGCAGCCTAGGTTTCGTTGGGTGACA-------------------------------CCTCCC
AAAGCACGGGAATCTCCTGCCAGTGACACCTCCCAGATCCACTTTGCCAGAGCAACATTTCGTTGGGTGCACGCATGTTC
ATTATCCTATCCTATGGCATCAAAATGCCAAGACGTGACATGGAATGGAATAGTCTTCAGTCTGTCCACCTATCGCACGC
--AGCAACCACTAT--AAAA-GGG-C-AGCTACCCCTTCGT---------CATTCCAGCATCGCAAAGCAAAGGCACACA
CAACACAAGTGCGCAGCCACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGC
CAGGGTGATCAAGGGGAAGGTGGCGATGGCGTACTCCAAGTACGCCGGCAAGGCCCAGGCCAAGCCTGCCCCGAGCGTCA
CCACCACACGCGCCTACCAGCCCAGGTACCCTTCTTCCATCGACGCCACCGCGAGCGCCCCCTGCACCGCGGCCGGTGAT
GTCGACGAGAGGGCCACGGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAGACGATGATGAGTTAGATGAG
CTCCGTCGT---------GGCCGGTCAGGTCGGTCCAGGCTCCGGGAGAGGTTTTATATTTG--ATGG-AACATCTTCTA
GGTAGCCATGGATATATACA---TACATGTCTCTA----CGTGGCACACCATGTCCTTTTCCTTTTTTTT---CCTCT-C
CTTTTGT--AACTTCAGTTTGACCATAAGAGTGG-AAGAAAGGGATGAT---------------AACATAATCCCCATTT
CC------------GCTGGGATGTGA--ATACGATCCTTCATCAAA----GTGGAGTTTGTGTG-------CCGTTCATT
TTTGTTG--GCCCCACAGTTCATCTCGACCGTGTAAAGAATCTTAAATTT-CAATTCC-TTTTT-TATGTCGAGAACTCC
TTTCCATGTGCCGTATCAAAATAGTAC-----AAATCATTTCGAAACATTCCATCTTATTTTTGCTTGAAACTGTAAAAA
TAAGCAATCTTCTGGTTCCCATCCAACGCCACC-GTTTGGATGAAGCACCTTAATTTAACCAGATTTTTAATAGA-TTTC
CCACTACATATGGATTATCACGGGTAAATATTTATATA------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3A_399
--------------------------------------------------------------------------------
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-------------------------------CATCATACATGTACAGAACCTACAACAACAACACGAGGAGTTGATGGAT
GATTCACAAGGGATAGAGAGGAATCACGAATCTGATGAGGATAACATTCGGAGCGCATACAGAATATCCGAAGCGACGAT
CTTCTCTTTCTGATCTGGAAAGGCCGAGAGGGCGGCAAAGAACCTTGGCAAGCATGTGCTGGTGCGTA------------
-----------------CGTGTATTTTTGTCACAAGACCAACTGTTCATTATCATGGTGCACTGCTAGTCTGCTAGATGC
AATCATACAGACCAC-AACCAGCTTAGGTTTCGTTGGGTGACACCTCCTCGTGTCACTTA-----CCACTGGACCCTCCC
GAAGCATGAGAATCTCCAGTCAGTGACACCTCCCAGATTCGCTTTGGCAGAGCTACGTTTCGTTGGGTGCACGCATGTTC
ATTATCCTATCCTATGGCATCAAAC--------------------------------------------CTATCTCACGC
--ACCAACCAGTAT--AAAA--GG-C-AGCTGCCTCTTCGT---------CATTCCAGCATCGCAAAGCAAAGGCACACA
CAACACAAGTGCTTAGCCACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGC
CAGGGCGATCAAAGGCAAGGTGGCGATGGCGTACTCCAAGTACGCCGGCAAGGCCCAGGCCAAGCCTGCCCTGAGC---A
CTACAGCACACGCCTACCAGCCAAGGTACCCTTTTTCCATTGACGCCACCGCGAGCGCCCCCTACGCCGCGGCTGATGAT
GTCGACGAGAGGGCCTCGGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAGACGATGATGAGTTAGATGAG
CTCCGTCGT---------GGCCCGTCAGGTCGGTCCAGGCTCCGGGAGAGGTTTTATATTTG--ATGG-AACATCTTCTG
GGTAGCCATGGATATATACA---TACATGTCTCTA----AGTGGCACACCATGTACTTTTCCTTTTTTTC---CCTCT-C
CTTTTGT--AACTTCAGTTTGACCATAAGAGTGG-AAGAAAGGGATGAT---------------AACATAATCCCCATTT
CCGAAAAAAAAAACGCTGGGATGTGA--ATACGATCCTTCATCAAA----GTGAAGTTTGTGTG-------CCGTTCATT
GTTGTTG--GCCCCACAGTTCATCTCGACCGTGTAAAGAATCTTAAATTT-CAATTCC-TTTTT-TATGTCGCGAACTCC
TTTCCATGTGCCGTATCAAAATAGTACTAC--AAATCATTTCGAAATATTCCATCTTATTTTTGCTTGAAACTGTAAAAA
TAAGCAATCTTCTGGTTCCCATCCAACGCCACC-GTTTGGATGAAGCACCTTAATTTAGCCAGATTTTTAATAGA-TTTC
CCACTACATATGGATTATCACGGGTAAATATTTATATA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr3D_446
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
GATTCACAAGGGATAGGGAGGAATCAGGAATCTGCCGAGGATAATACATTT----------GGATATCCGAAGGGATGAT
CTTTT-TTTCTGATCTGGAAAGGGCGAGCGAAAGGCAATGAACCTTGGCAAGCATGTGCGCGTGCATA------------
-----------------CATGGATTTTTATCACAGGACCAACCGTATATTATCATGGCCCA-----------CTAGATAC
AATCATGCAGACCACAAACCAGATTCACT-----------ACATCTCTTGGTGTCACTTA-----CCACTGGACCCTCCC
AAAGCATGAGAATCTCCTGTCAGTGACACCTCCCAGATTCACTTTGCCAGAGCTGCATCCCGTTAGGTGCACGCATGTTC
ATTATCCAC-----TGGCATCGAAATGCCAGGATGTGACATGGAATG------TCTATGGCCTTCCTAGCTACCACTTGG
--TCGTTCCAGTATAAAAGA-GGG-TTCTTCGGCA-TTCCA---------CATTCCAGCATCGCAAAAC-AAGGCGCACA
CAACACAAGTGCACGG-CACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAGCGGCGC
CAGGGGGATCAAAGGGAAAGTGGCTATGGTGTACTCCAAGTACGCCGGCAAAGGGCAGGCCAAGCCTGCGCCGAGCGTCA
CTACGGCGCACGCCTACCAGCCCAGGTATCCTTCTTCCATCGACGCGAGGGCGACCGCCCCCTATGCCGCCGCCGGTGAT
GTCGACGAGAGGGCCACGGCCTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAGAAGATGATGAGCTAGTTGAG
CTCCGTCGT---------GCC------GGTCAGTCCACGCTCGAGGAGAGGTTACATATTTG--ATGGAAACATCTTCTA
TGTAGCCATGGATACATACAGTATACATGTCTAGGTAGTAGGAGTACACCGTGTACTTCTTTTTCTGTTC---TCTCT-C
TTTTTTGTGAACTTCAGTTTGACCATCAGAGTGCGGAAGTAGGCAGGATAATATAAAGGGACCAAATATAAATCTCATTT
CTGAAGTCAT----GCTGGGATGTGA--ATATGATCTTCCATCTAA----GTGGAGTTTGTGAGATCTCCACCGTTCATT
CTTGTTTTGGTCCAACACCCAT-CTCGACTCTG---AGAATTTTTAAATTTCAGTTCCT--------TGTGGAGAACGTC
TTCACAAGTGCCATTTCAAAACAGTTC---------------CAAACATTTCATCTTGTTTTTGCTTGAAACTGTAAAAA
TAAATAATCATCATGTTACCATCCAACTCCACCGGTTTGGATGAAGCACCACTTA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr3B_446
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
GATTCACAAGGGATAGGGAGGAATCAGGAATCTGCCGAGGATAATACATTT----------GGATATCCAAAGGGATGAT
CTTTTTTTTCTGATCTGGAAAGGGCGAGAGAGAGGCAAAGAACCTTGGCAAGCATGTGCTCGTGCATA------------
-----------------CATGGATTTTTATCACAGTACCAACCGTATATTATCATGGCCCA-----------CTAGATAC
AATCATGCAAACCACAAACCAGATTCACT-----------ACATCTCTTCGTGTCGCTTA-----CCACTGGACCCTCCC
AAAGCATGAGAATCTCCTGTCAGTGACACGTCCCAGATTCACTTTGCCAGAGCTGCATCCCGTTAGGTGCACGCATGTTC
ATTATCCAC-----TGGCACCGAAAGGCCAGAATGTTACATGGAATG------TCTATGGCCTTCCTAGCTACCACTTGG
--TCATTCTAGTATAAAAGA-GGG-T-AGCTACCTCTTCGGCATTCCACACATTCCAGCATCGCAAAGC-AAGGCGCACA
CAACACAAGTGCACAGCCACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAGCGGCAC
CAGGGGGATCAAAGGGAAAGTGGCTATGGTGTATTCCAAGTACACCGGGAAAGGGCAGGCCAAGCCTGCACCGAGCGTCA
CTACGGCGCACGCCTATCAGCCCAGGTATCCTTCTTCCATCGACGCGAGGGCAAGCGCCGCCTATGCCGCCACCGGTGAC
GTCGACGAGAGGGCCACGGCCTTCATACTGTCCGTCCGAGAGCGCTTCAACAACGAGCAGAAGATGATGAGCTAGTTGAG
CTCCGTCGT---------GGCCGGTCAG-----TCCAGGCTTCAGGAGAGATTACATATTTG--ATGGAAGCATCTTCTA
TGCAGCCATGGATACATACAGTATACATGTCTAGGTAGTAGTAGTACACCGTGTACTTCTTTTTCTGTTC---TCTCT-C
TTTTTTGTGAACTTCAGTTTGACCATAAGAGTGTGGAAGTAGGGATGATAATATAAAGGGACCTAATATAAATCTCATTT
CTGAAGTCAT----GCTGGGATGTGA--ATACGATCTTCCATCTAA----GTGGAGTTTGTGAGATCTCCACCGTTCATT
CTTGTTTTGGTCCAACACTCAT-CTTGACCG-----AGAATTTTTAAATTGCAGTTCCTTTTTTGGATGTGGAGAACCTC
TCTACAAGTGTCGTTTCAAAATAGTTG---------------GAAACATTTCATCTTGTGTTTGCTTGAAACTGTAAAAA
TAAATAATCGTCATGTTACAATCCAACTCCACCGGTTTAGATGAAGCACCT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr3D_871
TCTAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------C--------------------------------------------CTATGTCACAC
--ACCAACCAGTAT--AAAA--GGGCAAGCTACCTCTTCGT---------CATTCCAGCATCGGAAAGCAAAGGCACACA
CAGCACAAGTGCACAACCACAAAGCTTAGGTAGAATCAAACACGGTGAAACCAAATGGAGGGAACCATGAAGAGTGGCGC
CAGGGGGGTCAAGGGGAAGGTGGCGATGGTGTACTCCAAGTACGCCGGCAAGGCCCAGGCCAAGCCTGCCCCGAGCGTCA
CTGCCGCACACGCCTACCAGCCCAGGTACCCTTCTGCCATTGACGCGACGGCGAGCGCCGCCTATGCCGCCACCGGTGAC
GTCGACGAGAGGGCCACGGCCTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAGAAGATGGTGATTTAGCTGAG
CTCGGTTGAGGTCGGCCGGCC------GGTTGGTCCAGGCTACAGGAGAGATTTTATATTTAAAATGG-AACATCTTCGT
GGTAGCCATGGATACATAGT-------TGTGTCTA----GGTGGTACACCATGTACCTTTTCTTTTCTTT---TCTCT-C
--TTTTGTGGACTTCAGTTTGACCATAAGAGTGG-AAGAAAGGGGTGAT---------------AATATAAATCCCATTT
CTGAGACC------------ATGTGA--TTATGATCCTCAATCAGA----ATGGAGTTTGTGTCATCTCCACTGTTCATT
CTTGTTC--GTCCAACACTCCATCTCGTCGGTGTAAAGAAATTTAAAATTGCAGTTCCTTTTAT-GATGTTGGGAACCTC
TTTACAAGTGCCGT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr3B_871
TCTAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------C--------------------------------------------CTATGTCACAC
--AGCAACCGGTAT--AAAA--GGGCAAGCTACCTCTTCGT---------CATTCCAGCATCGGAAAGCAAAGGCACACA
CAACACAAGTGCACAACCACAAAGCTTAGGTAGAATCAAACACGGTGAAACCAAATGGAGGGAACCATGAAGAGCGGAGC
CAGGGGGATCAAGGGGAAGGTGGCGATGGTGTACTCCAAGTACGCCGGCAAGGCCCAGGCCAAGCCTGCCCCGAGCGTCA
CTACCGCACACGCCTACCAGCCCAGGTACCCTTCTTCCATTGACGCGACGGCGAGCGCCGCCTATGCCACCACCGGTGAC
GTCGACGAGAGGGCCACGGCCTTCATACTGTCTGTCCGGGAGCGCTTCAAGAACGAGCAGAAGATGGTGATTTAGCTGAG
CTCGGTCGT---------GGTCGGCC------------------GGTGAGATTT-----------TGG-AACATCTTCTC
GGTAGCCATGGATACATACT-------TGTGTCTA----GGTGGTACACCATGTACATTTTCTTTTCTTT---TCTCTCC
--TTTTGTGGACTTCAGTTTGACCATAAGAGTGG-AAGAGAGGGATGAT---------------AATATAAATCCCATTT
CCGATACCATT-----TGGGATGTGA--ATATGATTCTCAATCAGA----ATGGAGTTTGTGTGATCTCCACTGTTCATT
CTGGTTC--GTCCAAGACTCCA-CTCGACCGTGTAAAGAAATTTAAAATGGCAATTCC-TTTAT-GATGTCAAGAACCTC
TTTACAAGTGCCGTTTCAAAAT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>SNPs
S------------------------S------------------------------------------------------
--S--------S----------S---------S--S-----S----SS----------------------S--------S
------------S-------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------S----------------------------S------
-----------S---------------------------------SS-SS--S-S--SSSSS-SSSSSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-----------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----S-----------------------------------
-----------------------------------------------S--------------------------------
------------------------------------------------S------------S------------------
------------------------------------------S-------------------------------------
---------------------S-----------S--SS--S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
----------------------------SS-------------------S-----------------------S------
--------------------------S------------------------------------------------S----
--------------------------------------S-----------------------------------------
------------------S--------------------S--------------S-S-S-----------------S---
-S-----S------------------------------------------------------------S------S----
S--S--------------S------------------S-S--SSSSSSS----------S---------------S-SS-
---S--S-------S--S------S-----SS------------S-------S--S---------S----------S-S-
S--S-------S----------S-S--------S----S-S---S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_127
--------------------------------------------------------------------------------
---------------------------GCGTCGATGGATTGCTTGAC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>reverse_2135
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CTTCGAGTTGGAAAGGCGTG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
