>input_sequence_85713
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---ATGCCGATAAGGAGCGCCCCGTGTGCGTGGACGGTGGAAGAATTCAAGAAGTGGGTCGACGTGAACGGCGACGGCCG
GATCAGCAAGGCCGAGCTCCGCCAGGCCATCCGCCGCCGGGGCTGCTGGTTCGCCACCGTTAGGGCCGGCCGCGCCGTCC
GCCGCGCCGACAGGGACCACAACGGCTACGTCGACGACGCCGAGCTGGAGCACCTCGTCGCTTTCGCGCGGGAACACCTC
GGCATGAACATCTCTGCCCGTTAG--------------------------------------------------------
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>chr2D_1_TraesCS2D01G173500
CCTCCCGGACGAAAGTCCAAAATCCATCTTGGATTGGGACGGCGGCGGCGCCCTGCGCGTCGTACCCTCCATAAAGGCGC
TGT-CTGGGAGGCTTGGGTGTTCGGGGGAGAGTTGCTATGGATGAAGGGCTCTGCGTATCAGCTCAAGTAGCGGCAATGG
TGTGGAGGTTGGCAGGAGGAGCGGCGTTCTAACCGCGTCAGATGCGTCTGGTAAGAGATGTCAAGTCATACCTGGCCGAC
AGGTGCTATGTTGTGTCATGCCTGGTCGGCAGGTGCTACGCATGACAGATCTTTCAGAGTCTCGGCGTCGGGATTGACGA
GCGCAGGGCGGTGGAGTCGTTGGGCGCCGTGGTGGCGTCGATGTATGGCCGGACTGGCAAGGATGATGCGGATCTCTCTC
CTGAAGATGGGACAGCGGTTTCGATGATGATGGCGGCTTATAAAACGTGTGCATGTAGTGTACGCTTTAGGTCTGTTGCA
CTGGTTGTCTGTTTCGATACGTTATGTGGATGGATCGGCGACGGCATCG-CTATAGATATGGGGAGTGAGAGCTCTCTGT
ATTATCA----------TGCGAGTGGTGGCTTCGGATGGCTTGATGTATGTTTTTATAAGA------------CCCTTGT
GAAATAATTAATAAAGATGGCTGCATGGATCGACTGATGCAGAG--GTTAGGGGTTTAACCTCCTTTTTCAAAAAAAGAA
AACGATGTCATATATATGCACTTGCTCGTTACTAGCATCGCGGTAAGTGTAGCGACTAAACAAATGATCGATGCGATGCT
CAAACCTGAAATTTACCTTTGCCGCCCCCCTCCAATAACTGAGATGAGATTCGGATTCTGATCAACACCCCTCGCAGCCT
GCAGATAGA----AACGA-------ATAAAGTCACGAGATGCTTCCAGGACCGGATCGACTATA----A-AAGGAGGCAC
AACCGCGAGAA-CTCGGCAGTCTCCGGCTGCAAGGACTAGGATAAGCTGGTTCTGAGCTTCTAGACACCATAGCCCATAG
GCCATGCCGATAAGGAGCGCCCCGTGTGCGTGGACGGTGGAAGAATTCAAGAAGTGGGTCGACGTGAACGGCGACGGCCG
GATCAGCAAGGCCGAGCTCCGCCAGGCCATCCGCCGCCGGGGCTGCTGGTTCGCCACCGTTAGGGCCGGCCGCGCCGTCC
GCCGCGCCGACAGGGACCACAACGGCTACGTCGACGACGCCGAGCTGGAGCACCTCGTCGCTTTCGCGCGGGAACACCTC
GGCATGAACATCTCTGCCCGTTAGCTACCTCGGTAGAGCTTCACCTGCTCAGACTAATGCCGAATATGGCAACATAGTGT
CTAAGCCTAGTGTCGTGTGATGGGTTCAGCTTGACATGTGAACTTCTCCTGAAACCTGAATAATATGTGT--AAATCCAG
GAGAATTTGTTAAGGTTTGTTACGACGACGACGTCTGCTACTATGTATGCAGTTGCTTAATTTTGAGTGTTTCTGCTGTA
AAATTTGGAAGTTGCATGAAGTATATATAGATTGGGCAAATTTGACCTGTGGACGAAATCAAATCACAGAATGAACTGCC
CGTGAAACTATTTCACGCAGCTGATCTTTTTATGTGACGCCC-GACACGAAGGCGCCACACTACACTGTGCAACGCCTCA
CAGATAGGCGCTACACGCCTGGCCAGAGTTGCATCCCAGACTGCCTAAAAATTACTAAATCATTGTGCAAAGCCTAAGAG
CTAGGCGCTGCACTGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACTAGTGGTTGCACTATAAAATAAAGCAACCACT
AGTGCAACGCCTAGAAGCTAGGCGCTACACTGTATAACT----GTATAGTGTGGCGCCTAACTCTAAGGCGCTGCACACT
GACTTAGTAATTTTTGAATCACACGGGTGCGACACTGGCCAGGCGTGTAGCACCTATCTATGAGGCGTTGCACAGTGTAG
TGTGGCGCCTTCGTGTTGGGCGTCACACGAAAAGGTAAGCCGCGTGAAATAGTTTCACGGGCAG----TTCATTGTGTGA
TTTGATTTCATCCATAGGTCAAATTTGTCAATTTTGCCATACAGATTGTCCTCGTGGCTTGCGCATTTTGACTACGTGAG
TGGTTTTTCTACGCCCCAGCTCGGTGCACCCACGCTACGTTCACGCAAGAAAACTTAGCAAAATATTTTTCTAAAAAAAT
CTGAAACTTTGTGGAAATGATTATAAACAAATGTTATAGATGCTTGTAAATTTTGGCGCTCAAGGGACATCTGAG
>chr5A_1
CCTCCCGGACGAAAGTCCAAAATCCGTCTTGGATTGG-ACGTCGGCGGCGCCCTGCGCGTCGTACCCTCCATGGAGGTGC
CGTCTTGGGAGGCTTGGGTGTTCGGGGGAGAGTTGCTGTGGGTGAAGGGCTCCGCGTGTCAACTCCGGTAGCGGCAATTG
TGTGGAGGTTGGCAGGAGGAGCGGCGTTCTAACCGCGTCAGATGCGTCTTGTAAGAGATGTCAAGTCATGCCTGGCCGAC
AGGTGCTACGCTGTGTCATGCCTGGTCGGCAGGTACTACGCATGACAGATCTTCCAGAGTCTCCGCGTCGAGATGGACGA
GTGCAGGGCGGTGGAGTCGTTGGGCACCGTGGTGGCGTCGACGGATGGCTGGACTGGCAAGGATGATGCGGATCTCCCTC
CTTAATATAGGACAGCGGTT-CGAGGATGATGGCGGCTTCTAAAACGTGTGCATGTGTTGTAAGCTTTAGGTCTGTTGCA
CCGGTTGTTTGCTGCGATACGTTATATGGATGGATCGGCGACGACATCGGCTATAGATATGACGAGTGGGAGCACTCCAT
ATTATCAAGTTTGTAGGTGTAAGTGGTGGCGTCGGGGGGCTTGATGTAT-----------ATTT-TTGTTAGATCCTTGT
GAAATAATTAATAAAGATGGTTGCATGCATCGATTGATGCA--GAGGCC-GGGGTTTAACCTCCCTTTAAAAAAAG----
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>chr2D_3
--TCCCGAACGGAAGTCCAAAATCCGTCTTGGATTGG-ACGGTGGCGGCGCCCTACCCGTCGTAACCTTCATGGAGGCGC
CGTCTTGGGAGGCTTGGGTGTTCGCGGGAGAGTTGCTATGGGTGAAGGGCTCCGCGTGTCAGCTCCAGCAGCGGCAATGG
TGTGGAGGTTGGCAGGAGGAGCGGCGTTCTAACCGCGTCAGATGCGTCTGGTAAGAGATGTCAAGTCATGCCTGGCCGAC
AGGTGCTACGCTGTGTCATGCCTAGTCGGCAGGTGCTATGCACGACAGATCTTCCAGAGTGTCCGCGTCGGGATGGACGA
GTGCAGGGCGGTGGAGTCGTTGGGCGTCGTGGTGGCGTCAACGGACGGCTGGACTGACAAGAATGATGTGAATCTCTCTC
CTGAAGATGAGACAGCGGTT-CGATGAAGATGACGGCGTCTAAAACGTGTGCATGTTGTGTACGCTTTAGGTCTGCTGCA
CCGGTTGTTTGTTCCGATACGTTAGATGGATGGATCGGCGACAGCATCGGCCATAGATATGAGGAGTGAGAGCACTCCAC
ATTATCAATTTTATAGGTGTGAGTGATGGCTTCGGATGGCTTGATGCAT-----------A------------CCCTCGT
GGAATAATTAACAAAGATGGCTGCATG-----------------------------------------------------
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>chr2B_3
--TCCCGGACGAAACTCCAAAATCCTTCTTGGATTGG-ACGGCGGCGGCGCCCTTCGTGTCGTAACCTCCATGGAGGCGC
CGTCTTGGGAGGCTTGGGCGTTTAGGGGAGAGTTGCTATGGGTGAAGGGCTTCGCGTGTCAGCTCCAGCAGCGGCAATGG
TGTGGAGGTTGGCAGGGGGAGCGGGGTTCTAACCGCGTCAGATGCGTCTGGTAAGAGATGTCAAGTCATGCCTGGCCGAT
AGGTGCTACGCTGAGTCATGCCTAGTCGGCAGGTGCTACACACGACAGATCTTTCAGAGTGTCCACGTCGGGATGGACGA
GCGCAGAGCGGTGGAGTCGTTGGGCGCCGTGGTGACGTTGACGGATGGACGGACTGGCAAGATAGATGCGGATCTCTCTC
CTGAAGATGGGACAGCGGTT-CGATGATGATGGCGGCCTCTAAAACGTGTGCAAGGGGTGTATGCTTTAGGTTTGCTGCA
CCGGTTATTTGTTCCGATACGTTAGATGGATGGATCGGCGACGACATCAGCTTTAGATATGGGGAGTGAGAGCCCTCCAC
ATTATCAAGTTCGTAGGTGTGAGTGGTGGCTTCGAGTGGCTTGATGTAT-----------GTTTCTGGTCAGATCCTCGT
GAAATAATTAATAAAGATGGCTGCATGCATCGATTGATGCAAAG--GCCGGGGGTTTAACCTCCATTTCAAAAAAA----
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>chr4D_3
--TCCCGGACGAAAGTCCAAAATCCGTCTTGGATTGG-ACGGTGGCGGCGCCCTTCGCGTCGTAACCTCCATGGAGGCGC
CGTCTTGGGAGGCTTGGGCGTTCGGGGAAGAGTTGCTATGGGCGAAGGGCTTCGCGTGTCAGATCCAGCAGCGGCAATGG
TGTGGAGGTTGGCAGGAGGAGCGGCGTTCTAACCGCGTCAGATGCGTCTGGTAAGAGATGTCAAGTCATGCCTGGCAGAC
AGGTGCTACGCTAAGTCATGCCTAGTCAGCAGGTGCTACGCATGACAGATCTTCCAGAGTGTCCGCGTCGGGATGGACGA
GCGCAGAGCGGTGGAGTCGTTGGGCGCCGTGGTGGCATCGACGGATGGCTGGACTGGCAAGAATGATGCGGATCTCTCTC
CTGAAGATGGGACAGCGGTT-CGATGATGATGGTGGCCTCTAAAACGTGTGCAAGGGGTGTACGCTTTAGGTTTGCTGCA
CCGGTTGTTTGTTCTGATACGTTAGATGGATGGATCGGCGACGGCATCGGCTTTAGATATGGGGAGTGAGAGCACTCCAC
ATTATCAAGTTTGTAGGTGTGAGTGGTGGCTTCGGGTGGCTTGATATAT-----------GTTCTTG-TCAGACCCTCGT
GAAATAATTAATAAAGATGGCTGCATGCATCGATTGATGCA--G--GCCGGGGGTTTAACCTCCATTTTCAAAAAAA---
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>chr3D_3
--TCCCGGACGAAAGTCCAAAATCAGTCTTGGATTGG-ACGACGGCGGCGCCCTTCGCGTCGTAACCTCCATGGAGGCGC
CGTCCTGGGAGGCTTGGGCGTTCGGGGGAGAGTTGCTATGGGTGAAGGGCTTCGCGTGTCAGCTCCAGCAGCGGCAAAGG
TGTGGAGGTTGGCAGGAGGAGCGGCGTTCTAACCGCGTCAGATGCGTCTGGTAAGAGATGTCAAGTCATGCCTGGCCGAC
AGGTGCTACGCTGAGTCATGCCTAGTCGGCAGGTGCTACGCATGACAGATCTTCCAGAGTGTCCGCGTCGGGATGGACGA
GCGCAGAGCGGTGGAGTCGTTGGGCGCCGTGGTGGCGTCGACGGATGGACGGACTGGCAAGAATGATGCGGATCTCTCTC
CTGAAGATGGGACAGCAGTT-CGATGATGATGGCAGCCTCTAAAACGTGTGCAAGGGGTGTACGCTTTAGGTTTGCTGCA
CCGGTTGTTTGTTCCGATACGTTAGATGGATGGATCGGCGACGGCATCGGCTTTAAATATGGGGAATGAGAGCACTCCAC
ATTATCAAGTTTGTAGGTATGAGTGGTGGCTTCGGGTGGCTTGATCTAA-----------TTTCTTG-TCAGACCCTCGT
GGAATAATTAATAAAGATGGTTGCATGCATCGATTGATGCATAG--GCCGGGGGTTTAACCTCCATTTCAAAAAAAAAAA
TCGAT---------------------------------------------------------------------------
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>chr1D_3
--TCCCGGACGAAAGTCCAAAATCCGTCTTGGATTGG-ACGGCGGCGGCTCCCTTCGTGTCGTAACCTCCATGGAGGCGC
CGTCTTGGGAGGCTTGGGGATTCGGGGGAGAGTTGCTATGGGTGAAGAGCTTCGTGTGTCAGCTCCAGCAGAGGCAATGG
TGTGGAGGTTGGCAGGAGGAGCGGCGTTCTAACTGTGTCAGATGCGTCTGGTAAGAGATGTCAAGTCATGCCTGGCCGAC
AGGTGCTACGCTGAGTCATGCCTAGTCGGCAAGTGCTACGCACGACAGATCTTCCAGAGTGTCCGCGTCAGGATGGATGA
GCGCAGAGCGGTGGAGTCGTTGGGCGCCGTGGTGGCGTCGACGGATGGACGGACTGGCAAGAATGATGCGGATCCCTCTC
CTGAAGATGGGACAGTGGCT-CGATGATGATGGCGGCCTCTAAAACGTGTGCAAGGAGTGTACGCTTTAGGTTTGCTGCA
CCGGTTGTTTGTTCTGATACGTTAGATGGATGGATCGGCGACGGCATCGGCTTTAGATATGAGGAGTGAGAGCACTCCAC
ATTATCATGTTTGTAGGTGTGAGTGGTGGCTTCGGGTGGCTTGATGTAT-----------ATTCTTT-TCAGAACCTCGT
GAAATAATTAATAAAGCTGGCTGCATGCATCGATTGATGC--------CGGGGGTTTAACCTCCATTTCCAAAAAAAAAA
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>chr1A_3
--TCCCGGACGAAAGTCCAAAATCCGTCTTGGATTGG-ACGGCGGCGGCGCC-TTCACGTCGTAACCTCCATGGAGGCGC
CATCTTGGGAGGCTGGGGCATTCGGGGGAGAGTTGCTATGGGTGAAGGGCTTTGCGTGTCAGCTCCAGCAGCGGCTATGG
TGTGGAGGTTAGCAGGAGGAGCGGCGTTCTAACCGGGTCAGATGCGTCTGGTAAGAGATGTCAAGTCATGCCTGGCCGAC
AGGTGCTACGCTGAGTCATGCCTAGTCGGCAGGTGCTACGCACGATAAATCTTCCAGAGTGTCCGCGTCGGGATGGACGA
GCGCAGAGCGGTGGAGTCGTTGGGCGTCGTGGTGGCGTCGACGGATGGCCGGACTGGCAAGAATGATGCGGATCTCTCTC
TTGAAGATGGGACAGTGGTT-CGATGATGATGGCAGCCTCTAAAACATGTGCAAGGGGTGTACGCTTTAGGTTTGCTGCA
CCGGTTGTTTGTTCTGATACGTTAGATGGATGGATCGGCGACGGCATCGGCTTTAGATATGGAGAGTGAGAGCACTCCAC
ATTATCAAGTTTGTAGGTGTCAGTGGTGGCTTCAGGTGGCTTGATGTAT-----------GTTTTTG-TCAGACCCTCGT
GGAATAATTAATAAAGATGGCTGCATGCATCGATTGATGCA--GAGGTCGGGGGTTTAACCTCCATTTCCAAAAAAA---
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>chr7D_3
--TCCCGGATGAAAGTCCAAAATCCGTTTTGGATTGG-ACGGCGGCGGCGCCCTTCGCATCGTAACCTCCATGGAGGTGC
CGTCTTGGGAGGCTTGGGCGTTCGGGGGAGAGTTGCTATGGGCGAAGGGCTTCGCGTGTCAGATCCAGCAGCGGCAATGG
TGTGGAGGTTGGCAGGAGGAGCGGTGTTCTAACCGCGTCAGATGCGTCTGGTAAGAGATGCCAAGTCATGCCTGGCAGAC
AGGTGCTACGCTGAGTCATGCCTAGTCAGCAGGTGCTACGCACGACAAATCTTCCAGAGTGTCTGCGTGGGGATGGACGA
GCCCAGAGCAGTGGAGTCGTTGGGTGCCGTGGTGGCGTCGACGGATGGCCGGACTGGCAAGAATGATGCGGATCTCTCTC
CTGAAGATGGTACAGTGGTT-CGATGATGATGGCGGCCTCTAAAACGTGTGCAAGGGGTGTACGCTTTAGGTTTGCTGCA
CCGGTTGTTTGTTCCGATACGTTAGGTGGATGGATCGGCGACGACATCGGCTTTAGATATGGGGAGTGAGAGCACTCCAC
ATTATCAAGTTTGTAGGTGTGAGTGGTGGCTTCGGGTGGCTTGATGTAT-----------GTTCTTG-TCAGACCCTCGT
GGAATAATTAATAAAGATGGCTGCATGCATCGATTGATGCA--GAGGCCGGGGGTTTAACCTCCATTTCCAAAAAAA---
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>chr2B_8
-------GACGAAATTCCAAAATCCGTCTTGGATTGG-ACGGCGGCGGCGCCCTTCGCGTCGTAACCTCCATGGAGGCGC
CGTCTTGGGAGGCTTGGGCGTTCAGGGGAGAGTTGCTATGGGTGAAGGGCTTCATGTGTCAGCTCCAGCAGCGGCAATGG
TGTGGAGGTTGGCAGGGGGAGCGGCGTTCTAACCGCGTCAGATGCGTCTGGTAAGAGATGTCAAGTCATGCCTGGCCGAC
AGGTGCTATGCTGAGTCATGCCTAGTCGACAGGTGGTACGCATGACAGATCTTTCAGAGTGTCCGCGTCGGGATGGACGA
GTGCAGAGCGGTGGAGTCGTTGGGCGCCGTGGTGGCGTCGACGGATGGACGGACTGGCAAGAAAGATGCGGATCTCTCTC
CTGAAGATGGGACAGCGGTT-CGATGATGATGGCGGCCTCTAAAACATGTGCAGGGGGTGTACGCTTTAGGTTTGTTGCA
CCGGTTGTTTGTTCTGATTCGTTAGATGGATGGATGGGCGCCGACATCGGCTTTAGATATGGGGAGTGAGAGCACTCCAC
ATTATCAAGTTTGTAGGTGTGAGTGGTGGCTTCGGGTGGCTTGATGTAT-----------GTTTCTTGTCAGATCCTCGT
AAAATAATTAATAAAGATGGCTGCATGCATCGATTGATGCA--AAGGCCGGGGGTTTAACCTCCATTTCCAAAAAAATGA
A-------------------------------------------------------------------------------
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>chr2A_708
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-------------ATATGCACTTGCTCATTACTAGCATCGCGGTAAGTGTAGCGACTAAACTAATGATCGATGCGATGCT
CAAGGCTGAAATTTACCTTTGCTGCCCCCCACCAATAACTGAGACGAGATTCGGATTCTGATCAACACCCCTCGCAGCCT
GCAGATAGA----AACGAATAAACTATAAAGTCACGCGATGCTTCCAGGACCGGATCGACTATA----AAAAGGAGGCAC
GACCGCGAGAAGCTCGGCAGTCTCCAGCTGCAAGGACTAG-ATAAGCTGGTTCTGAGGTTCTAAACACCAAATAGTATAG
GCCATGCCGATAAGGAGCGCCCCGTGTGCGTGGACGGTGGAGGAATTCAAGAAGTGGGTCGACGTGAACGGCGACGGCCG
GATCAGCAAGGCCGAGCTCCGGCAGGCCATCCGCCGCCGGGGCTGCTGGTTCGCCACCGTTAGGGCCGGCCGCGCCGTCC
GCCGCGCCGACAGGGACCACAACGGCTACGTCGACGACGCCGAGCTCGAGAACCTCGTCGCTTTCGCGCGGGAACACCTC
GGCATGAACATCTCTGCCCGTTAGCTACCTCGCTAGAGCGTTACCTGCTCAGACTAATGCCCAGTAT-------------
-------------CGTGTGATGCGTTCAACTTGACATGGAAGCTTCTCCTGAAT----AATACTATGTGTAAAAATCCAG
GAGAATTTGTCAAGGTTTGTTACGACGACGACGTCTGCTACTATGTATGCAGTTGCTTAATTGTGAGTGTGTCTGCTGTA
AGATTTGAAAGTTGCATGAAGT----------------------------------------------------------
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>chr2B_708
ATATGC--------------------------------------------------------------------------
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--------------------CTTGCTCATTACTAACATTGCAGTAAGTGTAGTGG-----CTAATGATCGATGCGATGCT
CAAGCCTGAAATTTACCTTTGTCTCCCTCCACCAATAACTGAGATGGGATTCGGATTCCGATCAACACCCCTCGCAGCCT
GCAGATAGATAGAAACGA-------ATAAAGTCACGAGCTGCTGCGTGGATTGGATCAACTCAACTATAAAAGGAGGCAC
GACCGCGAGAAAA--------------CTGCAAGGAC-----TAAGCTGGTTCTGAGCTGCTAGACACCATATAGCATAG
GCCATGCCGATAAGGAGCGCCCCGTGTGCGTGGACGGTGGAAGAATTCAAGAAGTGGGTCGACGTGAGCGGCGACGGCCG
GATCAGCAAGGCCGAGCTCCGCCAGGCCATCCGCCGCCGGGGCTGCTGGTTCGCCACCGTTAGGGCCGGCCGCGCCGTCC
GCCGCGCCGACAGGGACCACAACGGCTACGTCGACGACGCGGAGCTCGAGAACCTCGTCGCTTTCGCGCGGGAACACCTC
GGCATGAACATCTCTCCCCGTTAGCTAGCTCGCTAGAGCGTTACCAGTTCAGCCTAATGCCCAGTATGGTAACATAGTAT
CTAAGCCTAGCATCGTGTGATGGGTTCAACTTGACATGCCAACTTCTCCTGAA-------TAATATGTGT--AAATCCAG
GAGAATTTTTTAAGGTTTGTTACGACGACGTCGTCTGCTACTATGTATGCAGTTGCTTAATTGTGAGTGTTTGTGCTGTA
AATTTTGAAAGTTGCATGAAGT----------------------------------------------------------
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>chr1A_1506
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------------------------------ATTTGACAAATTTGACCTGTGGACGAAATCAAATCACAGAATGAACTGCT
CGTGAAACTATTTCACGCGGCTGACCTTTTTGTGTGACGCCC-GACACGAAGGCGTCAAACTACATTGTGCAACGCCTCA
CAGATAGGTGCTACACGCCTGACCAACGTTGCACCCCAAACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTACGGG
CTAGGCACTGCACTGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACTAGTGGTTGCACTATAAAATGAAGCAACCACT
AATGCAACGCCTAGAAGCTAGGCGCTACACTGCATT------------GTGTGGCGCCTAGCTCTCAGGCGCTGCACACT
GACTTAGTAATTTTCAGATCACATGAGTGCGACGCTGGCCAGGCGTGTAGCGCCTATCTGCGAGGCGTTGCACAGTGTAG
TGTGACGCCTTCGTGTCGGGCGTCACACAAAAAAGTCAGCCGCGTAAAATAGTTTCACGGGCAG----TTCATTCTGTAA
TTTGATTTCGTCCATAGGTTAAATTTGTCAATTTTGCC------------------------------------------
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---------------------------------------------------------------------------
>chr6D_1506
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------------------------------ATTTGACAAATTTGATCTGTGGACAAAATCAAATCACAGAATGAACTGCC
CGTGAAACTATTTCACGCGGCTGACCTTTTTGTGTGACGCCC-GACACGAAGGCGCCACACTATATTGTGCAACGCCTCA
CACATAGGCGCTACACGCCTGGCCAGCGTTGCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCTTAAGAG
ATAGGCGCTGCACCGTATAGTGTGGCGCCTAGCTCTCAGGAGATGCACTAGTGGTTGCACTACAAAATGAAGCAACCACT
AGTGCAACGCCTAGAAGCTAGGCGCGACACTGTATAGTGT---ATACAGTGTGGCGTCTAGCTCTCAGGCGCTGCACACT
GACTTAGTAATTTTCGGATCACACGGGTGTGACGCTGGCCAGGCATGTAGCGCCTATCTGTGAGGCGTTGTACAGTGTAG
TATGGCGCCTTCGTGTAGGGCGTCACACAAAAAGGTCAGCCGCGTGAAATAGTTTGACGAGCAG----TTCATTCTATGA
TTTGATTTCGTCCATAGGTCAAATTTGTCAATTTTGCC------------------------------------------
--------------------------------------------------------------------------------
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>chr3A_1506
--------------------------------------------------------------------------------
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------------------------------ATTCGACAAATTTGACCTGTGGATGAAATCAAATTACAGAATGAATTGTC
CGTGAAACTATTTCACGTGACTGAC-TTTTTGTGTGACGCCCAGACACGAAGGCGCCACACTACATTGTGCAACGCCTCA
CAGATAGGCGCTACACGTCTGACCAACGTTGCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAG
CTAGGCGCTGCACTGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACT
GGTGCAACGCCTAGAAGCTAGGCGCTACACTGTATATTGTGG------------TGCCTAACTCTCAGGCGCTGCACACT
GACTTAGTAATTTTCGGATCACACGGGTGCGACGCTGGCTAGGCGTGTAGCGCCTATCTGTGAGGCGTTGCGTAGTGTAG
TGTGGCGCCTTCGTGTCAGGCGTCACACAAAAAGGTCAGCCGCGTAAAATAGTTTCACGGGCAG----TTCATTCTGTGA
TTTGATTTCGTTCATAGGTTAAATTTGTCAATTTTGCC------------------------------------------
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---------------------------------------------------------------------------
>chr5D_1506
--------------------------------------------------------------------------------
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------------------------------ATTTGACAAATTTGATCTGTGAACGAAATCAAATCACGAAATGAACTGGA
CGTGAAACTATTTCACGCGGCTGACCTTTTTGTGTGACGCCC-GATACGAAGGCGTCACACTACACTGTGCAACGCCTTA
CAGATAGGCGCTACACGACTGGCCAGCGTTGCATCCCAAACTGCCT-AAAATTACTAAGTCATTGTGCAGAGCCTAAGAG
CTGGGCGCTGCACTGTATAGTGGGGCGCCTAGCTCTCAGACGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACT
AGTGCAACGCCTAGAAGCTAGGTGCTACACTGTATAGTGTGGCATACAGTATGGCGCCTAGCTCTCAGGCGCTGCACATT
GACTTAGTAATTTTCGGATCACACGGGTGCGACGCTGGCCAGGCGTGTAGCGCCTATTTGTGAGGCGTTGCACAGTGTTG
TGTGGTGCCTTCGTGTCGGGCGTCACACAAAAAGGTCAGCCGCGTGAAATAGTTTTACGGGTAG----TTC----TGTGA
TTTGATTTCATCCATAGGTCAAATTTGTCAATTTTGCC------------------------------------------
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---------------------------------------------------------------------------
>chr5B_1506
--------------------------------------------------------------------------------
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------------------------------ATTTGACAAATTTGACTTGTGGACGAAATCAAATCATAGAATGAACTGCC
CGTGAAACTATTTCACACGGCTGACCTTTTTGTGTGACGTCC-GACACGAAGGTGCCACACCACAATGTGCAACGCCTCA
CAGATAGGCGCTACACGCCTGGCCAGCGTTGCACCCCAGACTGCCTAAAAATTGCTAAGTCAATGTGCAGAGCCTAAGAG
CTAGGCGCTGCACTGTATAGTGTGGTGCCTAGGTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACT
AGTGCAACGCCTAGAAGCTAGGCGCTACACTGTATAGTGTTG------------TGCCTAGCTCTCAGGCGCTGCACACT
GACTTGGTAATTTTCGCATCACACGGGTGCGACGCTGGCCAGGCGTGTACCGCCTATCTGTGAGGCGTTGCACAGTATAG
TATGGCGCCTTCGTGTCGGGCGTCACACAAAAAGGTCAGCCACATGAAATAGTTTTACGGGCAGTTTATTT----TGTAA
TTTAATTTCGTCCATAGGTTAAATTTGTCAATTTTGCCA-----------------------------------------
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---------------------------------------------------------------------------
>chr2D_1510
--------------------------------------------------------------------------------
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----------------------------------GGCAAATTTGACCTGTGCACGAAATCAAATCATAGAATGAACTGTC
CGTGAAACTATTTCACGCGGCTGACCTTTTTGTGTGACGCCC-GACACGAAGACGCCACACTACACTGTGCAACGCCTCA
CAGATAGGCGCTACACGCCTGTCCAGCGTTGCACCCCAGACTGACTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAG
CTAGGCGCTGCACTGTATAGTGTGGCGCCTAGCTCTCAGGCACTGCACTAGTGGTTGCACTATAAAATGAAGCAACCACT
AGTGCAACGCCTAGAAGCTAGGCGCTACACTGTATAGTGTGG------------GGCCTAGCTCTCACGCGTTGCACACT
GACTTAGTAATTTTCGGATCACACGGGTACGACGCTGGCCAGGCGTGTAGCGCCTATCTGTGAGGCGTTACATAGTGTAG
TGTGGCGCCTTCGTGTCGGGCGTCACACAAAAAGGTCAGCCGCGTGAAATAGTTTCACGGACAATTCATTC----TGTGA
TTTGATTTCATCCATTGGTCAAATTTGTCAATTTTGCCA-----------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr3D_1512
--------------------------------------------------------------------------------
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------------------------------------CAAAATTGACCCGTG--CGAAATCAAATCACAGAATGAACTGTC
CGTGAAACTATTTCATGCGGTTGACTTTTTTGTGTGACGCCC-GACACGAAGGCGTCACACTACACTGTGCAACGCCTCA
CAGATAGGCGCTACACGCCTGGCCAGCGTTGCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAG
CTAGGCGCTGCACTGTATAGTGTGGCGGCTAGCTCTCAGGCGCTGCACTAATGGTTGCACTACAAAATGAAGCAACCACT
AGTGCAACGCCTACAAGCTAGGCGCTACACTGTATAGTGTGGCGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACT
GACTTAGTAATTTTCGGATCACACGGGTGCGACGCTGGCCAGACGTGTAGTGCCTATCTGTGAGGCGTTGCACAGTATAG
TGTGGCGCCTTCATGTCGGGCGTCACACAAAAAGGTCAACCGCGTGAAATAGTTTCACGGGCAGTTCATTC----TGTGA
TTTGATTTCGTCCATAGGTTAAATTTGTCAATTTTGCC------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr1D_1512
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CAAATTTGACCTGTGGACGAAATCAAATCACAGAATGAACTGCC
CGTGAAACTATTTCACGCGGCTGACCTTTTTGTGTGACGCCC-GACACGAAGGCGTCACACTACACTGTGCAACGCTTCA
CAGATAGGCGCTACACGCTTGGCCAGCGTTGCACCCGAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAG
CTAGGCGCTGCACTGTATGGTGTGGCGCCTAGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATAAAGCAACCACT
AGTGCAACGCCTAGAAGCTAGGCGCTACACTGTATAGT------------ATGGCGCCTAGCTCTCAGGTGCTGCACACT
GACTTAGTAATTTTAGGATCACACGGGTGCGACGCTGGCCAGGCGTGTAGCGCCTATCTATGAGGCGTTGCATAGTGTAG
TGTGGCGCCTTCGTGTCAGGCGTCACACAAAAAGGTCAGCCGCGTGAAATAGTTTCACGTATAGTTCATTC----TGTGA
TTTGATTTCATCCATAGGTCAAATTTGTCAATTTTGCC------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>chr1D_1512
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CAAATTTAACCTGTGAACGAAATCAAATCACAGAATGAACTGTC
CGTGAAACTATTTCACGCGGCTGACCTTTTTGTGCGACGCCT-GACACGAAGGCACCACACTACACTGTGCAACGCCTCA
CAGATAGGCGCTACACGACTGGCCAGCGTTGCACCCCAGAGTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAG
CTAGGCGCTGCACTGTATAGTGCGGCGCCTAGCTCTCAGGCGCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACT
AGTGCAACGCCTAGAAGCTAGACGCTACACTGTATAAT------------ATGGTGCCTAACTCTCACGCGTTGCACACT
GACTTAGTAATTTTCGGATCACATGGGTACGACGCTGGCTAGGCGTGTAGCGCCTATCTGTGAGGCGTTGCACAATGTAG
TGTGGCGTCTTCGTGTCGAGCGTCACACAAAAAGGTCAGCCGCGTGGAATAGTTTCACGGGCAGTTCATTC----TATGA
TTTGATTTCATCCATAGGTCAAATTTGTCAATTTTGCC------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>SNPs
-------------------------S-----------S----------------------------------SS------
S----------------------------------------S---------------S-------S--------------
---------------------------------------------------------------------S----------
----------S----------------------------------------------------S----------S-----
-----------------------------------------S-S------------------------------------
--------------------S------------------S----------------------------------------
-S------S----S-----------------------------------------------------------S---SS-
-------------------S-----------------------------SSSSSSSSSSS--------------------
---------------------------S-----S-------S------SS--------------S------------S--
-SSSSSSSSSSSS--------------S---------------------------------S------------------
---S--------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
S------------------------S--------------S-------------------------------SSS-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---S-----------------------------
--------------------------------S------S-S-------------------S-S-----S--------S-
----------SS----------------S---------SS-------------SSSSS----------------------
--------------------------------------------------------------S-----------------
-------S--------------SSSSSSSS---S----------------------------------------------
------------------S-----S------S------------------------------------------------
--------------------------S-------------------------------S----------S----------
--------------------------------------------------------------------------------
-------------------------------------SS--------------------------S--------------
--------------S-S----------------S-----------------S----------------------------
----------------S-----------S-------S-------------------------------------S-----
---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_674
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AGATGGCTGCATGGATCGAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>reverse_2159
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TGGTTTTTCTACGCCCCA--------------------------------------------------------------
---------------------------------------------------------------------------
