>input_sequence_85692
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-----------------------------------------------------------------------ATGGGCTCG
GCAACAGTCCTGGAGGTGATCCTCGCCATCATCCTGCCTCCCGTCGGCGTCTTCCTGCGCTACAAACTCGGCGTAAGTGG
TTACTCTTTCTACTGTGTACG-----GGCTTCGCTGTGCCTTATTT-TAGTCCCGTATCTGATCTGGTTATTACTGGTGT
CGATGCGTCGATTCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCATACTGGGGTACATACCGGGGATCATCTACGCGG
TGTACGTGCTGGTAGTTTAA------------------------------------------------------------
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>chr4B_1_TraesCS4B01G197300
GAGCCGCGATGACCCGCTGTGCTGCGATGGATCATCGCCGCGCTGTTGTTGTTGCCGAACGCCCTGCTCCGCCGATGAAG
GGGTGCGGCTCGTGCTTGCAAGCCGGGCGGTGCTGCTTCCGCGATGACTCGCGTTGTTGCTTCATGTGGCACAATGTGTG
TTGGCCGATCCAACGGCTGCGCGGGGAAGGTTCCGGCGGCCTGCAACCCGACTGATTTCTTCACGAAATCGACCGCTCGA
TCCATAGCAGCCGTCATTTCAAATAGTTTTGAAGCTAGTCTTGCTAAATTTCAGTCAACTGAGACGTAGTGTCTCGGTCG
ATGCTATATTCATGGATATTATTTTAAGATCCGTGTAAATTTTCTTTTAAGTTATTTTTTCCTGCATGTTATATATCATT
TGATTGATATTAGACGTAGCCACAGCTTTTAAAAAACTGCTCTGTGGCGGACAATCAAAATTGGACGTCTAGTACCACGC
GGAGCACACAAGGACGAACCCACCACAGCTGTGGTGGCTGCAAAAGCAACCGCTCCAGCTAAGAAAACTTTGGAAACACC
CCAAACGGTGCCGTGCCGACATGCATAGATATTT-TTTTTCTGACGGGAGTGCCGACATGCATGGATACAACGAGCCAGG
TCCAAAAAGGACAGGCACAGCGCATCGGACAAGAACACGCCACCAGCAAACAGAGA-TTTTTAAGAGGGAGGAGGTTAAT
CTAATCTTCAGAGCTACAGCACCCCATATTCGCACG-GTCTCCAGAAGAAGATGCTACGTGGAGTGCAGGTGGCCAAATC
---ACCTGCCAGCCCGGGGACACGTACACCACCTCCACATCAAAGTATCAAACCACACCAGT---TACTAAAAACACCCG
AAGTCTTGTCTATATAAATGGACGTGTACTACATGATCTGGCAATCCAAATCATCCA--------ATCCAGTCGCCTCTT
TCAG-----AAG-----GGAAAGCAGAGAGAAAGAAAGGAGAG----GGCCTCGAGTGAAGTGAGCAAGCCATGGGCTCG
GCAACAGTCCTGGAGGTGATCCTCGCCATCATCCTGCCTCCCGTCGGCGTCTTCCTGCGCTACAAACTCGGCGTAAGTGG
TTACTCTTTCTACTGTGTACG-----GGCTTCGCTGTGCCTTATTT-TAGTCCCGTATCTGATCTGGTTATTACTGGTGT
CGATGCGTCGATTCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCATACTGGGGTACATACCGGGGATCATCTACGCGG
TGTACGTGCTGGTAGTTTAAGCAAACAGCCTCTGCTGCAGGATCCAGGCTTGGACGAGCGAGTCGCTGTGCACGAGCAAC
TGATGCTGTCTGTGTTAAGATAGCATGTCT----------TTGTGTAAGCTTGTATGTATTGAATATTGTGGATTTCATT
TTTTTTTTGGAACTTGGTATTGTTGATCCTGTGA-------TGTCACGAGTGTACGTAGCTCGAGGGCTTTAGGGCATTC
GTCGGCTCCAGTGTTTGTGATCTTAAATTTAAAGTACTCTACTTCGGAAGCAATCGAAGTGGGAGGTCAGTACTGTTGCA
AGTGTTTCAGAAACAGAG-AAAAAATGCATGCATGATGGAACAACAACTCCATCTGTCCCATAAGGTGCATGCAGCATGA
TGGAACACCAACTCCATCTGTCCCATAAGGGCATCTCCGACGGCAACACCCCCACCCTCGAGAAAAACCTCCTGCTTCCG
TCCGCCGGGGGGGGGGGGTCCGTGGACACGGTTGACAAAATTCATGCAAACACGGCCGGATTTCATGCAAACTTGATCGG
TTTTCATACAAACATAACGGATTTAATACAAAACCGGACGCAGACAGTTACATTTTGAAAATATTTTAACTAAAAAGTTA
AAAACTATGTGCACGTACGGTCGCGACGTGCC------------------------------------------------
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-------------------------------------------------GGCGATGGCCATCCTGGGACCCAAGCGGCGG
CGGCCTCGCGTGTTCCATTTCCCCTCTAAGTTGCCAGCGGACATGGACGCGGATGCGCTGGCCACTGACTCGTCGATCTC
-CTCCGCGCACCCGCCTTCTTTCTCTGTCTGCATGGCGTGGCTACGCGTGCCCTCGACTGTGGATGGTGCGGTCGTAGGC
ACTGGAGGGGCGGTACGACGCAACGTTATCCATGCCCATGCCGCCGTGCTTCCCTTCGTGCCAGCCTAGAGCAACTCGCC
ACTCCTCTGTGAGCTGGCTTGGAGCGGTGAGTTGCTGAACCACGCGTCGAATTGGACCGGCAACTTGCTCCATCGGCATA
GGGAAGGGAGGTGGAG
>chr4D_312
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-----------------------------------------------------------------------TCTCGATCG
ATGCTATTCATGA-GATATTATTTTAAGATCTGTGTAAATTTTCTTTTAAGTTATTTTTTTCTGCGTGTTAT--ATCATT
TGACTGAGGTTAGACGTAGCCACAGCTTTAAAAAAGCTGCTCTGTGGCGGACAATCAAAATTGGACGTCTAGTACCACGC
GGAGCACACAAGGACGAACACA----------GGTGGCTGCAAAAGCAACCGTTCCAGCTATG-AAACTTTGGAAACACC
CCAAACGGGTCCGTGCCGACATGCATAGATATTTCATTTTCTGACGGGAGTGCCGACATGCATGGATACAACGAGGCAGG
GACAAAAAGAG-AGGCACAGCGCATCGGACAAGAACACGCCACCAGCAAACAGAGATTTTTTAAGTGGGAGGAGGTTAAT
CTAATCTCCAGAGCTCCAGTACCCCATATTCGCACGCGTCTCGAGAAGAAGATGCTACGTGGAGTGCAGGTGGCCAAACT
AGTACCTGCCAGCCCGGGGACACGTACACCACCTCCACATCAAAGTATCAAACCACACCAGT---TACTAAAAACACCCG
AAGTCTTGTCTATATAAATGGACGTGTACTACATGATCTGGCAATCCAAATCATCCA--------ATCCAGTCGCCTCTT
TCAG-----AAG-----GGAAAGCAGAGAGAAAGAAAGAAGCCAGAAAGCCTCGAGTGAAGTGAGCAAGCCATGGGCTCG
GCAACAGTCCTGGAGGTGATCCTCGCCATCATCCTGCCTCCCGTCGGCGTCTTCCTGCGCTACAAACTCGGCGTAAGTGG
CTACTCCTTCTAATTTGTACTACTCCGGTTTCGATGTGCCTTGTTT-TAGTCTGGTATCTGATCTAGTTACT---GGTGT
GGTTGTA-----TCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCATACTGGGGTACATACCGGGGATCATCTACGCGG
TGTATGTGCTGGTAGTTTAAGCAA-CAGCCTCTGCTGCAGGGTCCGGGCTTGGACGAGCGAGTCGCTGTGCACGAGCAAC
TGATGATGTCTGTGTTAAGATAGCATGTCT----------TTGTGTAAGCTTGTATGTATTGAATATTGCGGATTTCAAT
T-TTTTTTGAAACTTGGTATTGT--------TGA-------TGTCACGAGTGTACGTAGCTCGAGGGCTTTAGAGCATTC
GTCGGCTCCAGTGTTTGTGATCTTAAATTTAAAGTA-----CTTCGGAAGCAATCGAAGTGCGAGGTCAGTACTGTTGCA
AGTGTTTCACAAACAGAGAAAAAAATGCATGCATGATGGAACAACAACT-------------------------------
----------ACTCCGTCTGTCCCATAGGGGCAT----------------------------------------------
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>chr4A_428
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--------------------------TTTAAAATAATTGCTCTGTGGCGGACAATCCAAATTGAACGTCTAGTACCACAC
GGAGCACACAAGGACGAACCCACCACAGCTGTGGTGGCTGCAAAAGCAACCGCTCCAGCTAGGAAAACTTTGGAAACACC
CCAAACGGGGCCTTGCCGACATGCATAGATATTTCTTTTTCTCACGGCAGTGCCGACATGCATGGATACAACGAGTCGGG
GACAAAAAGGACAGGCACAGCGCATCGGACAAGAACACGCCACCAGCAAACAGAGA-TTTTTAAGAGGGAGGAGGTTAAT
CCAATCTTCAGAGCTACAGCGCCCCATATTCGCACGCGTCTC---AAGAAGATGCTACGTGGAGTGCAGGTGGCCAAACC
---ACCTGCCAGCCCGGGGACACGTACACCACCTCCACATCAAAGTATCAAACCACACCAGT---TACTAAAAACACCC-
AAGTCTTGTCTATATAAATGGACGTGTACTACATGATCTGGCAATCCAAATCATCCA--------ATCCAGTCGCCTCTT
TCAG-----AAG-----GGAAAGCAGAGAGAAAGAAAGGAGCTAGAAGGCCTCGAGTGAAGTGAGCAAGCCATGGGCTCG
GCAACAGTCCTGGAGGTGATCCTCGCCATCATCCTGCCTCCCGTCGGCGTCTTCCTGCGCTACAAACTCGGCGTAAGTGG
TTACTTTTTCTACTGTGTACG-----GGCTTCGCTGTGCCTTATTT-TACTCCCGTATCTGATCTGGTTATTACTGGTGT
GGATGTGTCGATTCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCATACTGGGGTACATACCGGGGATCATCTACGCGG
TGTACGTGCTGGTAGTTTAAGCAA-CAGCCTCTGCTGCAGGGTCCAGGCTTGGACGAGCGAGTCGCTGTGCAAGAGCAAC
TGATGCTGTCTGTGTTAAGATAGCATGTCT----------TTGTGTATGCTTGTATGTATTGAATATTGCGGATTTCATT
T-ATTTGGGGAGCTCGGTATTGTCGATCCTGTGA-------TGTCACGAGTGTACGTAGCTCGGGGACTTTAGGGCATTC
GTCGGCTGTAGTGTTTGTGATCTTAAATTTAAAGTA--------------------------------------------
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>chr4D_755
GTCCCAA-------------------------------------------------------------------------
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---------------------------------------------AAAAAGTTGCTACGCGGAGTGCAGGTGGCCAAGCC
---ACGTGCCAGGACAGGGACACATACACCACCTACAAAGGCCAAAG-CAGACCAGAACAGT---TACTAAAAACACCCG
AAGTCTTGTCTATATAAACGGACGTGTACAC---GATCTTGCAATCCAAATCAACCGCCCACCCCATCCAGGCGCTTCTC
GCTTTCAGAAAG-----AGGAAGGACAGAGAAAGAAAGAAGCCAGAAAGCCTCGAGTGAAGTGAGC----CATGGCCTCA
GCAACGTTCATAGAGGTGATCCTCGCCATCATCCTGCCTCCGGTCGGCGTCTTCCTGCGCTACGGCCTCGCCGTAAGTGG
CTACTCTTTATAATTTGTACCT-----GTTTCGCCGTGCCTTGTTTGTAGTCTCCTATCTGATCTGGTTATTACTGCTGT
GGATATGTGGATTCAGGTGGAGTTCTGGATCTGCCTCTTGCTGACCCTACTGGGGTACATACCGGGGATCATCTACGCGG
TGTATGTGCTGGTGGCTTAAGCAA-CGGCCTCTGCTGCAGGGTCCAGGCTTGGACGAGCGAGTCGCTCTGCAAGAGCAAC
AGGGGCTGTCTTCAGAGGGCATGTGTTGATCAGTTCGTGCTTGTTTATGTATGTATTGATTGAGTATTGTGGATTTTTC-
T-TTCTTTGGAACTCGGTATTGT--------TGACCTGTGATGT------------------------------------
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>chr4A_778
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------------------------------------------------------------GGACTGCAGGTGGCCAAGCC
---GCGTGCTGGGGCAGGGACACGTACGCCACCTCCAAAGCAAA--------CCAGAACAGTTACTACTAAAAACAACTG
AAGTCTTGTCTATATAAACGGACGTGTACAC---GATCTTGCAATCCAAATCAACCACCCACCCCATCCAGGCGCTTCTC
GCTTTCGGAAAAAGGAAAGGAAGAACAGAGAAAGAAAGAAGCCAGAAAGCCTCGAGTGAAGTGAGC----CATGGCCTCA
GCAACGTTCATAGAGGTGATCCTCGCCATCATCCTGCCTCCGGTCGGCGTCTTCCTGCGCTACGGCCTCGCCGTAAGTGG
CTACTCTTTCTAATTCGTACG-----GGTTTCGCCGTGCCTTGTTTGCAGTCTCCTATCTGATCTGGTTATTACTGCTGC
GGATGTGTCGATTCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCTTACTGGGGTACATACCGGGGATCATCTACGCGG
TGTATGTGCTGGTGGCTTAAGCAA-CGGCCTCTGCTGCAGGGTCCAGCCCTGGACGCGCGGGCGGCTGTGCAAGAGCAAC
AGATGCTGTGTTCAGAGACCATGTGTTGATCAGTTCGTGCTTGTTTATGTATGTATTGATTGAGTATTGTGGATTTTTC-
T-TTCTTTGGGACTCGGTATTGT--------TGACCTGTGATGTGATGAGTGT---------------------------
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>chr3D_1739
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---------------------------------GACGAAATTCATGCAAACACGGCCGGATTTCATGCAAACTCGACCAG
ATTTCATACAAACATGACGGATTTCATACAAACTA-GACGCAAACGGTTACATTTTGGAAATATTTTAATTTAAAA-TTT
AAAACTATGCGCACGTACAGTCGCGCGGAGCTCCACTCCCACAACATGAATACACTACACTAGTCTATGACCGGCCGTGG
CAGATCCTTTTGTCATCGGACTGCCGGGAGTCCCGGAGGCATTTCTCCCCCGTATATTCCCTATGTCTGGCTGCGCCGCT
CATCGGAGTGTGGCGAAGAGGGTGCTTCAGCCGGAGGGGAAGGGTGCTTCCGTGGACGCCCAAACCAGTGTGGTCAAAGA
TAAAGAAGAAACCGGGCACGTCACCGGCTGTACAAGCCGACGATGCGCTGGCGGTGGCCTTCCTCGGACCCAAGCGGCGG
CGGCCTCCCGTGTTCTACTTTCCCTCGAAGTTGCCAGCGGATGTGGACGCGGATGCGCTGGCCACCGGCTCGTAGATCTC
GCTCCGCGCACCCGCCTTCTT-CTCTGTCTGCATGGCGCGGCTACGCACGCGC-CGACGGCGGATGGCGCGGTCGTAGGC
ACTGGAGGGATGGTACGACGTGACGTCGTCCATGCCTATGCCCCCGTGCTCCCCTCCGTGCCAGCCTAGAGCAACTCGCC
ACTCCTCCACGAGCTGGCTTGCAGCAGCGAGTTGCTGAACCACGCGCCGGATTGGGGCGGCAACTTGCTCCCGCGGTCTA
GGAGAGGTGGGTGGAG
>SNPs
-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---
-------SSSSSSS-----------------S----------------------------S----S------SS------
---S---SS--------------------S--------------------------------------------------
-------------------------------------------------------------S------------------
--------S------------------------------------------------------------------S----
SS------------------------------------------------------------------------------
------------------------------------------S-----------------------------------S-
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-----------------------------------------SS-------------------------------------
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S----S--------------------------------------------------------------------------
------------------------S----------------S--------------------------------------
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-S---------------------S--------------------------------------------------------
------------------------------------SSSSS--------------------S------------------
---------S---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----S-----------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------------------------------S--S-S-
S--------------S--------S-------SSSS------S--S-----------S-----------S-S----S--S
---------S--------S------SS-S--S------------------------------------------------
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-----------------------------------------------------S-----S----S---------------
-------S-------S-S--S-----S--------------SS----------------------S-S-----S------
---------------------S----------------S--------SS--S-S----S-S------S------------
---------SS---------SS----SS--------S-----S-------S----S------------------------
-------SSS-----------S---S-S------------------S--S-----SS--------------SS---SS--
--SS---SS-------
>forward_151
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---------------------------------------------------CGTTGTTGCTTCATGTGGCA---------
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>reverse_1874
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---------------------------------CCGGACGCAGACAGTTACAT---------------------------
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