>input_sequence_85666
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------------------------------------------------------------------------------AT
GAATGCTGCAACAAGTCTAGAACCTAGAGCAAAGGCTACCCTGGTTCTCGGAGGGGAATCGTTCGCAGTCAGCTCCGAGT
CCGGCACCCTGTCGGAGCAGCTGGCGGCGATGAGGGAGAAGAGCATGGTGATCCTCAAGGAGTACATCACCAAGCACAAC
GTCCCGAACGATGTCCCTGATGAATCCATTGAGGGCCCATCGGATGAGGAGGGCGAGGCACTTGCTAAAAACCCGCCCAA
GAAATCAAAGAAGCAGAAGTGA----------------------------------------------------------
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>chr7A_1_TraesCS7A01G534300
AAAAAATCAATAAACCTTTCACCTAAAAAAGAATCAATAAATCTCCCAATTTTTTTAAAAATATTTCTTGCTTTTCTTAA
GGGGTTTTGGTTTTTGTTCTTCGGGGTCAAGAGTTTTTTTTTAGATATATCTTCGGGGTCAAGAGTGACTCCACGGATTG
TGCCAGCCTAACTTCGCTTTCCGGCCCACTAGTTCCTGCTCGGCCCAGGCCAGCCGCTCCTCTCCTC--CTCACCTCTCC
AGCGCGTGCTGCCCTAACTGACGCCGTGGAAGTGCGCGCCGCCGCCCGCTCTCTCCCCGGTCG------CGCCGCCGCCG
CCTCTCCGCAGCCCGAGCGTAAGATCTCAATCAACCTCTCTTCCTATGTCATCCTACTCCACCTCT------TGCAGCGT
CCGTTGCTTGCGGCATCGCTGCATCTGAC--------------------GGGGGCTCTCATCTGTGTGTTGGATCCATGT
ATAAATTGGTCAGGCGAGCTGCAAAATTCTGTAATCATAGACTGCGGCATATGT--TTTTTTGTGTGTGTTTGGTTCTGT
ATGCAAGCATTTTTTAGCTCTGTAGAAAGGATTTGGTCACTCTGTGTTCTGTAAGGGGTAGCTGTGTTGGTACAAATGTG
CAAGTGCAATATCAACAGCTAGCCAGATTCTGATCCCCATCAGTACTTCTTTCACTCCAGTATTTGTTTCATCCTCAATT
CTCCCTAGATTGCGTCTCTGGAAGGCAGCGGAACAATCTTCCGCTGCAGAGTTCATTATTAGTTTCAGGACTCCACAAAA
AA--AAAGCTTCAGAACTGCCTCTAATTGCCATGCTAGGATGATAACCAGCAGCATTTTGCTTTGCACCGGTGAACAGTT
TACAGACCATTCCCTGAATGAATGCTCCATCCTAATGAAATTGTGGAATCGGCATTTTCTGAATACGCCGTACAACTGAA
ACTGTGGAACCGGTGTCAACCTTTCCTTACCTCTGCTACCATGTTTATTCTCAGGTTAATAATCCCTGGACGATGGAGAT
GAATGCTGCAACAAGTCTAGAACCTAGAGCAAAGGCTACCCTGGTTCTCGGAGGGGAATCGTTCGCAGTCAGCTCCGAGT
CCGGCACCCTGTCGGAGCAGCTGGCGGCGATGAGGGAGAAGAGCATGGTGATCCTCAAGGAGTACATCACCAAGCACAAC
GTCCCGAACGATGTCCCTGATGAATCCATTGAGGGCCCATCGGATGAGGAGGGCGAGGCACTTGCTAAAAACCCGCCCAA
GAAATCAAAGAAGCAGAAGTGATTGTCCTGAATCTCATCTGATTTATCGTGCCCTTTCTTAGTCCTCTCTTGCAAAGATC
TGAGAACATGCTGTTACCCCTTGCTAGCTGTTCCTTTGACACTGAACGACCAACAATTTATTCTTAGGCA------CACT
AGCTGCTTGTGTATCAAATCGA----TGTGTGCAAGCGACGCTCAATGTTGTTATCTGATAATATGTGTGTGCAAGGAAA
GTTTGCATCTTTCTTTCTGTACAACTCG-TTGTTAGAAGATGTTCTGCTTTTCGCTGGTAATATATGAGCTTCAGCACTA
AAGTCCATTGCAGTTAAATCATTTGTCAGATGTTTTGCTTTTGAGGATAATGAATGAGCTTCAGCACAAGTGAAATGATC
ATCCTAATCTGGTTTGACTTGGCACACACTTTCTTGGTACCCCAGCAAAGGTCAGAGAACATGCTGATCCCC--TTGCTA
GCTGCTGTTCCTTTGACACGAAAAGGTCAGAACTATTGTTAGCAGCAA---ATCTGCTTGTGTAGGAAATTGCTGCTGGT
GCTTGTGCAAACGGTGCTCAATGTTGTTGTCTAATATGATGGTAGGTGCAGGGGAATTCGCTCCTTTCTGTACGACTCTT
TGGGTATGTGATGATTTGCTTTGAGGAGAATATATGACTGGGCTTCAGCACATGAGTTCTTAATTTTCTGTTGCTTGTCC
ATGTTATGTGCAGTAAGGCGTCAACAACCTGAAATCCAACAAGCAACAGCTCCTGATAGCAGTCAAAATTCCCATAAAAG
ATATTGTGTGTACACTACATGCGTCAGTTAGTCTTCCTCGGTGTACTACTGATGATCTCTCAGTTCAAAATGTTGAAAAG
CTTCGCGGGCTCTGTCAGTTTTGTTCCTCACTCACTTGGAGATGGCACAAGTCCAAAGATCAAATTATTGTTACGAGCTA
AGTTGCAGTTGCGAGAAATCGCTTCTGGTGCATGTGCAAGTGATGCTCAATGTTATCCCTTGATATATGCAGGGTAAG
>chr7B_163
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--CCAGCCTAACTTCGCTTTCCGGCCCACTAGTTCCGGCTCGGCCCAGGCCAGCCTCTCATCTCCTCCTCTCACCTCTCC
AGCGCGTGCTGCCCTAACTGACGCCGTGGAAGTGCGCGCCGCCGCCTGCTCTCTCCCCGGTCGAGCCACCGCCGCCGCCG
CCTCTCCACAGCCCGAGCGTAAGATCTCAGTCAACCTCTCTTCCTGGCTCCTCCTCCTCCACCTCCACCCCCTGCTGCAT
CCGTTGCTTGCGACATCGCTGCACCGTAGGTAGGCAGGATCTGTCTGACAGGGGCTCTCATCTGTGTGTTGGATCCATGT
ATAAATTGGTCTGAAGAGCTACAAAATTCTGTAATCATAGACTGCGGCATATGTAATTTTTTGTGTGTGTTTGGTTCTGT
ATGCAAGCATTTTTTAGCTCTGTAGAAAGGATTTGGTTGCAGTTTGTTCTGTAAGGGGTAGCTGTGTTGGTACAAATGTG
CAATG------TCAACACCTAGCCAGATTCTAATCCCCATTAGTGCTTATTTCACTCCAGTATTTGTTTCATCCTCAATG
CTCCCTAGATTGCGTCGCTGGAAGGCAGCGCAACGATCCTCTGATGCAGAGTCCATTATTAGTTTCAGAACTCGACTAAA
AA--AATGCTTCAGAACTGCCTCTAATTGCCATGATAGGAT---AACCAGCAGCATTTTGCTTTGCACCGGTGAACAGTT
TACAGATCATTCTCTGAATGAATGCTCCATGCTAATGAAATTGTGGAATCGGCATTTTCTGAATACGCCGTACAACTGAA
ACTCTGGAACCGGTGTCAACCTTTCCTTACTTCTGCTACCATGTTTATTCTCAGGTTAAT---CCCTGGACGTTGGAGAT
GAATAGTGCGACAAGTCTAGAACCGAGAGCAAAGGCCACCCTGGTTCTCGGAGGGGAATCATTCACAGTCAGCTCCGAGT
CGGGCACCCTGTCTGAGCAGCTGGCGGCGATGAGGGAGAAGAGCATGGTGATCCTCAAGGAGTACATCACCAAGCACAAC
GTCCCAAATGATGTCCCTGATGAATCCATCGAGGGCCCATCGGATGAGGAGGGTGAGGCACTTGCTAAAAACCCGCCCAA
GAAATCAAAGAAGCAGAAGTGATTGTCCT---------------------------------------------------
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---------------AAATCATTTGTCAGATGTTTTGCTTTTGAGGATAATGAATGAGCTTCAGCACAAGTGAAATGATC
ATCCTAATCTGGTTTGACTTGTCACACACTTTCTTGGTACCCCTGCAAAGGTCAGAGAACATGCTGATGCCCCTTTGCTA
GCTGCTGTTTCTTTGACACGAAAAGGTCAGAATTATTGTTAGCAGCAA---ATCTGCTTGTGTAGGAAATTGCTGCTGGT
ACTTGTGCACACGGTGCTCAATGTTGTTGTCTCATATGATGATAGGTGCAGGGTAATTCGCTCCTTTCTGTATGACTCTT
TGGGTATGTGATGATTTGCTTTGAGGAGAATCTATGACTGGGCTTCAGCACAAGAGTTCTTAATTTTCTGTTGATTGTCC
ATGTTATGTGCAGTAAGGCACCAACAACCTGAAATCCAACAAGCAACAGCTCCTGATAGCAGTCAAAATTCCCATAAAAG
ATATTGTGTGTACACTACATGCGTCAGTTAGTCTTCCTCGGTGTACTAC---TGATCTCTCAGTTCAAAGTGTTGAAAAG
CTTCGCAGGCTCTGTCAGTTTTGTTCCTCACTCA----------------------------------------------
------------------------------------------------------------------------------
>chr7D_254
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---------------AAGTGACGCCGTCGAAGCGCGCGCCGCCGCACGCTCTCTCCCCGGCCGAGCCTCCGCCGCCGCCG
CCTCTCCACAGCCCACGCGTAAGATCTCAGTCAACCTCTCTTCCTAGCTCCCCCCGGGCCCCCCT-------------AT
CCGTTGCTTGCGGCATCGCCGCACCGTAGGCAGGTAGGATCTGTCTGATGGGGGCTCTCATCTGTGTGTTCCATCCATGT
ATAAATTGGTCTGGAGAGCTGCAAAATTCTGTAATCATAGACTGCGGCGTATGT-----TTTTTGTGTGTTTGGTTCTGT
ATGCAAGCATTTTTGAGCTGTGTAGAAAGAATTTGGTTGCAGTGTGTTCTGTAAGGGGGTAGCTGCAA------------
-----------------------------CTAATCCCCATCAGTACTTCATTCACACCGGCATTTGTTTCATCATCAGTT
TTCG-TAGATTGTGTCTCTGGAAGGCAGCGGAACGATCTTCTGCTGCAGAGTCCATTATTAGTTTCAGAACTCAACTAAA
AACAAAAGCTTCAGAACTGCCTCTAATTGCCATGATAGGAT---AACCAGCAGCATTTTGCTTTGCACCAGTGAACAGTT
TACAGATCATTCCCTGAATGAATACTCCATGCTAATGAAATTGTCGAATCGACGTTTTCTGAATACGCCGTACAACTGAA
ACTGTGGAACCGGTGTCACCCTTTCCTTACCTCTGCTACCATGTTTATTCTCAGGTTAATAATCCCTGGACGATGGAGAT
GAATGCTGCGACAAGTCTAGAACCTAGAGCAAAGGCCACCCTGGTTCTCGGAGGGGAATCGTTCACAGTCAGCTCCGAGT
CGGGTGCCCTGTCGGAGCAGCTGGCGGCGATGAGGGAGAAGAGCATGGTGATCCTCAAGGAGTACATCACCAAGCACAAC
GTCCCAAACGATGTCCCTGATGAATCCATCGAGGGCCCATCGGATGAGGAGGGTGAGGCACTTGCTAAAAACCCGCCCAA
GAAATCAAAGAAGCAGAAGTGATTGTCCTAAATCTCATCTGATTTATCGTGTTCTTTCTTAGGCCCCTCTTGCAAAGATC
CGAGAACATGCTGTTACCCCTTGCTAGCTGTTCCGTTGACACAGAAAAAC---CAAATTATTCTTATGCGCCCCTGCACT
AGCTGCTTGTGTAACAAACAAATCGCTGTGTGCAAGCGATGCTCAATGTTGTTATCCGATAATATGTGTGTGCAAGGAAA
GTTTGCATCTTTCTTTCTGTACAACTCGTTTGTTAGAAGATGTTCTGCTTTTCGCTGGCAATATATGAGCTTCAGCACAA
AAGTTCGTTGCAGTTAAATAATTTTTCAGATGTTTTGCTTTTGAGGATAATGAATGAGCTTCAGCACAAGTGAAATGATC
ATCCCAATCTGGTTTGACTTGTCACACACTTTCTTGGTACCCCAGCAAAGGTCAGAGAACATGCTGTTGCCCC-TTGCTA
GCTGCTGTTTCTTTGACACGAAAAGGTCAGAACTATTGTTAGCAGCAAAAAATCTGCTTGTGTAGGAAATTGCTGCTGAA
CA------------------------------------------------------------------------------
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-------------------------------------------------TGATGATCTCTCAGTTCAAAATGTTGAAAAG
CTTGGCGGGCTCTGTCAGTTTTGTTCCTCACTCACTTGGAGATGGCACAAGTCCAAAGATCAAATTATTATTATGAGC--
---TGCAGTTGCGAGAAATCGCTTCTGGTGCATGTGCAAGCCATGCTCAATGTTTTCCCTTGATATGTGAAGGGTAAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------------------------------S------------------S---S--------------------
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-------S---------------------S----------------SS--S----S---------S---------S--S-
-----------------------S-SS-S---------------------------------------------------
-----------S--S-----------------------------------------------------------------
-------------------------------------SS-SS--------------------------------------
---SSSSSSSS------S-------------S------------------------------------------------
----------------------------------S------S----------S---------------S----S--S---
----------------------------------S------SSS------------------------------------
------S-----------------------S-------------------------------------------------
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---------S--------------------------S---------------------------S---------------
-S------------------------------------------------------------------------------
-----S-----------------------S-----------------------S--------------------------
-----------------------------S---------------------SS---------S--S--------------
S---------------------------------S-------S---SS--SSS---S---------S--S----------
-------------S----SSS------------------S----------------S-----------------------
----------------------------------------------------------S-------------------S-
----S-S-------------------------------------------------------------------------
---------------------S----------------------------------------------S-----------
---------S----------------------------------------------------------------------
S--------S----------------------S--------S-----------S------------------S-------
-------------------------------S--------------------S--------------------S------
-------------------SS-----------------------------------------------------------
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---------------------------------------------------------------------S---S----SS
SSS-------------------------------------SS------------S-----------S--S--------
>forward_399
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-----------------------------------------------------------CTACTCCACCTCTTGCAGCG-
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>reverse_2234
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-------------------------------------------------------------------------CGAGCTA
AGTTGCAGTTGCG-----------------------------------------------------------------
