>input_sequence_85665
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----------------------------------------ATGGCGGAAGTGCGACAACAGGTTCCTGGTGGCGTGGGCG
GCGCCCAGCGCCCCCGTGCTGGTAGGTCGGTGGGGGCGGCGGCGCCTTGGGTAGGACACCCGGTGGGAGGAGGCGCGCTG
GGCGGCGAGATCCAGGGAGGAGGAGGGTGGCGGCGCGATCCAGGGAGGAGGGCGGCGGCGGTCAGGGAAGGGGATCGGGG
TAGCGGCTGTGGTGGGGTGGGCTTTTCTATAAAAATCGGTCCGGTGGGCTTTTCGGGATCTTAG----------------
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-------------------------------
>chr7A_1_TraesCS7A01G396000
GATAAAAGCCTTATAGGGCAAGGCAATTAAAAAAAGCCTAAAAGGTTATCTTTCCAAAATAAGGGAAAAATCATGGGGGA
GATTTTTTTCACCCCGTAATATGTTCTTCGAACTTTCTAATGAATTAAATTTGAACTTCTAGAACATTTTCTAGGTTAGA
CTTTGTTTTCTTCTTGTTTTTCATGTCATGTATGCTTTGTGTTTTCTCCTTTTTGGATGTTTTTCATGTCTTGTGAATAT
ATTCACTTTTTTCATCTTTGCATTATACATGATCTTTTGTTGTAACATCATACTGCATGTGCACTTTCTTGCGGTTTAGT
TTTGGCCAAATAGGAAGTTTAGAGAAATGGACCAAAACACACGTTTTTTGCACCTGCGGGTATAGCTGAACTTCATACAT
CAAAAAACAATCAGAAACAACACATAAATGGACAGGGGGGAGGAATCGACCCTTTGATCTGGATACGGTACAACAATAGG
AAAAACAGAAAAGCGAGATCGACCGAGGATGGAGCTTGGGGGGCGTAGATGTGCTGGGCGGCCACTCGCATGGTGCCTCG
AAATGGAGCAAGTTGCGGAGGTGTGGCACACACTCACACGGTGTGGATTTGAACATCCTCAGATGGCAAAGTTGAACGGC
CTGGGCACTGCCGCTGTTGTGTGTCTCCGCCGCTGCTGCCGAAGTAGAAGTTGAACATGTAGCGCCGAGGGGACGAGGTC
CCGCGGGGCCGTGGCCTGCAGCGTCGGCGGGAGGATCCCGGTTGGGAAGGCGGAGCGCGGGGCGGGGGCGACGGCTCCGG
TGGCTGAAAGTGCGCCCGGGTGAGACAAGCGGCAGGATCCACCGGAGGAAGAGAAGGAGAAGAGGAAGGGGTTGACCGGA
TTCGCGTTCGCAGCAAGAAGGGGACTGCATGGGGAGCCGGCCATGGACTGCGTGCCAGGTTGATGGTACTCGAGGATCCG
CGGTGGCGGTGGTGATTGGGGCGCGGAGGAGCGTGCGGCCATGGCGGAAGTGCGACAACAGGTTCCTGGTGGCGTGGGCG
GCGCCCAGCGCCCCCGTGCTGGTAGGTCGGTGGGGGCGGCGGCGCCTTGGGTAGGACACCCGGTGGGAGGAGGCGCGCTG
GGCGGCGAGATCCAGGGAGGAGGAGGGTGGCGGCGCGATCCAGGGAGGAGGGCGGCGGCGGTCAGGGAAGGGGATCGGGG
TAGCGGCTGTGGTGGGGTGGGCTTTTCTATAAAAATCGGTCCGGTGGGCTTTTCGGGATCTTAGGAACACCTCGGTCGCT
CCCTATATAGGCATGACGTGATCCAAATAACTATTCTAATCATGAGATTAGAATAGTGTTGTCCTATATGTATATGCACA
CTTATAAGC---TGGTTGCATAACCAAATTAGACATCCACTTATATAGGTGGCTACTATAACCATGGCACTTGCACACAC
CAAAGTAAACTATTACATGCATAATTACATAGGTGTCTACTACACACATGACATTTCCA--CACAC--CAATAAAGTAAA
CTATGTATTAAATGCATGATTAACTAGCATAAACGATGATTTGATCATCATCTACTTCTTGTGACGCTTGCTCTGCTTGT
GGCTCGATCTGGGCTCGTCGATTTGGGTAACAAGGTACTTCCTCATGTCAACGATCCGCCTGTGCATCTCATAGCATGTG
TACATGCTCTTGGCCGCAAACCTGAGGTGAGGTTCATCCAGTTGCCGCATCAAGGCCCTGTGCGAGCATAGGGGACTTGT
TCTCTGGGCATTCTGCTTCATCTTTTCGTAGTAGGGGTCGATGATGGCCGAGGCAAGTTTGACCAGGGAGTCCTTCTTCG
TGCTACCCCATATACCCTATAGTGGTCATGGATTTCAACAAGGTTCTTGCAGGCCAAGCCTGTAACACTGAGCGTGTTTA
CATCGTCGGTGGTTTTCACCGTGGCGAAGTTGTAGCTTATCTCGTTTGCTTGTCCCACAATTGCCAATGGCACCGGTCCG
TCATCATCGCTCAACCACTCCGCTGTCATCATAGGACAACTCCAGCTAGGAGGCTACACCGCGGTGGCGGCGCAGTCCCC
GGCGTAGTGTACTGCGCATGGCTTCCTTGTTGGGTGTGTGCGGAACACCCACCACACGCTCCGCCGCCGCTGCCCATCGG
TAGCTGTTGCCGGCCGTCGTTGCCGCCACACCACCATCGAAAGCCAAGGCCATCTTCGCTTCGCTGCCGCAGCCCAAAGG
CGAGAGGTGTCCGTTGTGGCCGCCACCCCAT
>chr1A_1281
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CCCTATATAGGCCTGACGTGATCCAAATAACTATTCTGATCCCAGGATCAGAATAGTGTTATCC----TATACACACACA
CTTATAAGGACATGCTTGCATAATAAAATTAAACATCCACTTACATAGGTAGCTACTACAACCATGGCATTTGCACACAC
CAAAGTAAACTATTACATGCATAATTACATAGGTGGCTACTACACACATGACATTTCTACACATAC--CAATAAAGTAAA
CTATATATTACATGCATGATTAACTAGCATAAACGGTCATCTGATCATCATCTAATTGTTGTGACGCTTGCTCTTCTTGT
GGCTCGATCCGGGCTCGTCGATTTGGGTAACGAGGCACTTCATTATGTCAACGATCCGCTTGTGAATCTCGTAGCATGTG
TACACGCTCTTGGCCACAAACCTGAGGTGAGGTTCAGCCAGTTGCCGCATCCAGGCCTTGTGCCAGGATACGGGACTTGT
TCTCTGGGCATCCTGCTTCATCTTTTTGTAGTAGGGGTCGATGATGGCTGAGGCGAGTTCGACCAGGGAGTCCTCCTTCG
TGCTGCCCCATAT--CCTATAGTGGTCACGGATTTCGACAAGGTTCTTGCAGGCCAAGCCCGTAACATTGCGTGCTTTTA
CATCGTCTTTGGTATCCACCGTGGCGAACTTGTAG---------------------------------------------
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>chr1D_1298
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-----------------GTGATCAGAATAT-TATTCTGATCACATGATCAGAATAGTGTATA--TATATATATAGACACA
CTTATAAGGACATGCTTGCATAACCAAATTAAACGTCCACTTATATAGGTGGCTACTACAACCATGGCATTTGCACACAC
CAAAGTAAACTATTACATGCATAATTACATAGGTGGCTACTACACACATGACATTTCCACACACAC--CAATAAAGTAAA
CTATATATTACATGCATGATTAACTAGCATAAACGATCATCTGATCATCATCTACTTCTTGTGACGCTTGCTCTGCTTGT
GGCTCGATCCGGGCTCGTCGATTTGGGTAACGAGGCACTTCCTCATGTCAACGATCCCCCTGTGCATCTCGTAGCATGTG
TACACGCTCTTGGATGCAAACCTGAGGTGAGGTTCATCCAGTTGCCGCATCCAAGCCCCGTGCCAGGATACGGGACTTGT
TCTCTGGGCATCCTGCTTCATCTTTTCATAGTAGGGGTCGATGATGGCTGAGGCGAGTTCGACCAAGGAGTCCTTCTTCG
TGCTGCCCCAGAC--CGTGTAGTGGTCACGGATTTCGACAAGGTTCTTGCAGGCCAAGCCCGTAACACTGAGCGCTTTTA
CATCGTTGGTGGTATCCACCGTGGCGAACTTGTAGTTA------------------------------------------
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-------------------------------
>chr2D_1345
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----------------------------------------------------------------TATATACATATACACA
CTTATAAGGACATGCTTGCATAACCAAATTAAACATCCACTAATATAGGTGGCTACTACAACCATGGCATTTGCACACAC
CAAAGTAAACTATTACATGCATAATTACATAGGTGGCTACTACACACATGATATTTC--CACACAC--CAATAAAGTAAA
CTATATATTACATGCATGATTAACTAGCATAAACGATCATCTGATCATCATCTACTTCTTGTGACGCTTGCTCTGCTTGT
GGCTCGATCTGGGCTCGTCGATTTGGGTAACGAGGCACTTCCTCATGTCAATGATCCGCCTGTGCATCTCGTAGCATGTG
TACACGCTCTTGGCCGCAGACCTGAGGTGAGTTTCATCCAGTTGCCGCATCCAGGCCCCGTGCCAGGATACGGGACTTGT
TCTCTGGGCATCCTGCTTCATCTTTTCGTAGTAGGGGTCGATGATGGCCGAGGCAAGTTTGACCAGGGAGTCCTTCTTTG
TGCTGCCCTAGAC--CCTGTAGTGGTCACGGATTTCGACAAGGTTCTTGCAGGCCAAGCCCGTAATACTGAGCGCTTTTA
CATCGTTGGTGGTTTCCACCATGGCGAACTTGTAG---------------------------------------------
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-------------------------------
>chr3D_1345
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----------------------------------------------------------------TATATATACACACACA
CTTATAAGGACATGGTTGCATAACCAAATTAAACATCCACTTACATAGGTGGCTACTACAACCATGGCATTTGCACACAC
CAAAGTAAACTATGACATGCATAATTACATAGGTGGCTACTACACACATGACATTTC--CACACAC--CAATAAAGTAAA
CTATATATTACATGCATGATTAACTAGCATAAACGATCATCTGATCATCATCTACTTCTTGTGACGCTTGCTCTGCTTGT
GGCTCGATCCGGGCTCGTCGATTTGGGTAACAAGGCACTTCCTCATGTCAACGATGCGCCTGTGCATCTCGTAGCATGTG
TACACGCTCTTGGTCGCGAACCTGAGGTGAGGTTCATCCAGTTGCCGCATCCAGGCCCTGTGCCAGGATAGGGGACTTGT
TCTCTAGGCATCGTGCTTCATCTTTTCGTAGTAGGGGTCGATGATGGCCGAGGCGAGTTCTACCAGGGAGTCCTTCTTCG
TGCTGCCCCAGAC--CCTATAGTGGTCACGGATTTTGACAAGGTTCTTGCGGGCCAAGCCCGTAACACTGAGCGCTTTTA
CATCGTCGGTGGTTTCCACCATGGCGAACTTGTAG---------------------------------------------
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-------------------------------
>chr6D_1345
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----------------------------------------------------------------TATATATACACACACA
CTTATAAGGACATGCTTGCATAACCAAATTAAACATCCACTTACATAGGTGGCTACTACAACCATGGCATTTGCACACAC
CAAAGTAAACTATTACATGCATAATTACATAGGTGGCTACTACACACATGACATTTC--CACACACACCAATAAAGTAAA
CTATATATTACATGCATGATTAACTAGCATAAACGATCATCTGATTATCATCTACTTCTTGTGACGCTTGCTCTGCTTGT
GGCTCGATCCGGGCTCGTCGATTTGGGTAACGAGTCACTTCCTCATGTCAACGATCCGCCTGTGCATCTCATAGCATGTG
TACACGCTCTTGGCCGCAAACCTGAGGTGAGGTTCATCCAGTTGCCGCATCCAGGCCCTGTGCCAGGATACGGGACTTGT
TCTCTGGGCATCCTGCTTCATCTTTTTGTAGTAGGGGTCGATGATGGCCGAGGCGAGTTCGACCAGGGAGTCCTTCTTCG
TGCTGCCCCAGAC--CGTGTAGTGGTCATGGATTTCGACAAGGTTCTTGCAGGCCAAGCCCGTAACACTGAGCGCTTTTA
CATTGTTGGTGGTATCCACCGTGGCGAACTTGTAGTTA------------------------------------------
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>chr7D_1348
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-------------------------------------------------------------------ATATATATACACA
CTTATAAGGACATGATTGCATAACCAAATTAAACATCCACTTACATAGGTGGCTTCTACAACCATGGGATTTGCACACAC
CAAAGTAAACTATTACATGCATAATTACATAGGTGGCTACTACACACATGACATTTC--CACACAC--CAATAAAGTAAA
CTATATATTACATGCATGATTAACTAGCATAAACGATCATCTGATCATCATCTACTTCTTGTGACGCTTGCTCTGCTTGT
GGCTCGATCCGGGCTCGTCGATTTGGGTAACGAGGCACTTCCTCATGTCAACGATCCGCCTGTGCATCTCGTAGCATGTG
TACACGCTCTTGGCCGCGAAACTGAGGTGAGGTTCATCCAGTTGCCGCTTCCAGGCCCTGTGCCAGGATAGGGGACTTGT
TCTCTGGGTATCCTGCTTCATCTTTTCGTAGTAGGGGTCGATGATGGCCGAGGCAAGTTCGACCAAGGAGTCCTTCTTCG
TGCTGCCCCAGAC--CCTGTAGTGGTCACGGATTTCGACAAGGTTCTTGCAGGCCAAGCCCGTAACACTGAGCGCTTTTA
CATCGTCGGTGGTTTCCACCGTGGCGAACTTGTAG---------------------------------------------
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-------------------------------
>chr4D_1351
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----------------------------------------------------------------------TATATACACA
CTTATAAGGACATGGTTGCATAACCAAATTAAACATCCACTTACATCGGTGGCTACTACAACCATGGCATTTGCACACAC
CAAAGTAAACTATTACATGCATAATTACATAGGTGGCTACTACACACATGAAATTTC--CACACAC--CAATAAAGTAAA
CTATATATTACATGCATGATTAACTAGCATAAACGATCATCTGATCATCATCTACTTCTTATGACGCTTGCTCTGCTTGT
GGCTCGATCTGGGCTCGTCGATTTGGGTAACAAGGCACTTCCTCATGTCAACGATCCGCCTGTGCATCTCGTAGCATGTG
TAAATGCTCTTGGCCGCGAACCTGAGGTGAGGTTCAACCATTTGCCGCATCCAGGCCCTGTGCCAGGATACGGGACTTGT
TCTCTGGGCATCCTGCTTCATCTTTCCATAGTAGGGGTCGATGATGGCCGAGGCGAGTTCGACCAGGGAGTCCTTCTTTG
TGCTGCCCCAGAC--CATATAGTGGTCACGGATTTCGACAAGGTTCTTGCAGGCCAAGCCTGTAACACTGAGCGCTTTTA
CATCGTTGGTGGTTTCCACCGTGGCGAACTTGTAG---------------------------------------------
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-------------------------------
>chr3D_1351
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----------------------------------------------------------------------TATATACACA
CTTATAAGGACATGCTTGCATAACCAAATTAAACATCCACTTACATAGGTGGCTACTACAACCATGGCATTTGCACACAC
CAAAGTAAACTATTACATGCATAATTACATAGGTGGCTACTACACACATGACATTTC--CACACAC--CAATAAAGTAAA
CTATATATTACATGCATGATTAACTAGCATAAACGATCATCTGATCATCATCTACTTCTTGTGACGCTTGCTCTGCTTGT
GGCTCGATCCGGGCTCATCGATTTGGGTAACGAGGCACTTCCTCATGTCAACGATCTGCCTGTGCATCTCATAGCATGTG
TACACGCTCTTGGCGGCGAACCTGAGGTGAGGTTCATCCAGTTGCCGCATCTAGGCCCTGTGCCAGGATAGGGGACTTGT
TCTCTGGGCATCCTGCTCCATCTTTTCGTAGTAGGGGTCGATGACGGCCGAGGCAAGTTCGACCAGGGAGTCCTTCTTCG
TGCTGCCCCAGAC--CCTGTAGTGGTCACGGATTTTGATAAGGTTCTTGCAGGCCAAGTCCGTAACACTGAGCGCGTTTA
CATCGTCAGTGGTTTCCACCGTGGCGAACTTGTA----------------------------------------------
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>chr2D_1357
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----------------------------------------------------------------------------CACA
CTTATAAGGACATGCTTGCATAACCAAATTAAACATCCATTTACATAGGTGGCTACTACAACCATGGCATTTGCACACAC
CAAAGTAAACTATTACATGCAT-ATTACATAGGTGGCTACTACACACATGACATTTC--CACACAC--CAATAAAGTAAA
CTATATATTACATGCATGATTAACTAGCATAAACGATCATCTGGTCATCATCTACTTCTTGTGACGCTTGCTCTGCTTGT
GGCTCGATCCGGGCTCGTCGATTTGGGTAACAAGGCACTTCCTCATGTCAACGATCCGCATGTGCATCTCGTAGCATGTG
TACACACTCTTGGCCGCGAACCTGAGGTGAGGTTCATCCAGTTGCCGCATCCAGGCCCTGTGCCAGGATAGGGGACTTGT
TCTCTGGCATTCCTGCTTCATCTTTTCGTAGTAGGGGTCGATGATGGCCGAGGCGAGTTCGACCAGGGAGTCCTTCTTCG
TGCTGCCCCAGAC--CCTGTAGTGGTCACGGATTTCGACAAGGTTCTTGCAGGCCAAGCCCGTAACACTGAGCGCGTTTA
CATCGTCGGTGGTTTCCACCGTGGCGAACTTGTAG---------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
------------S------------------------S----SSS---S-----------S--------S-----S----
--------S----------------------S--------------------------S----------S----------
-----------------------------------S--------------------------------------------
----S-----S--------------------------S--S---------------------------------------
-----------------------------------S--------------------------------------------
---------------------------------------------------S-----------S--S-------------
-----------S--------------------------------------------------------------------
----S--------SS---------------------S-------------------------------------S-----
---------------S------------S------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_878
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----------------------------------------------------------GAAGAGGAAGGGGTTGACCG--
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>reverse_2010
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---------CTCAACCACTCCGCTGTCAT---------------------------------------------------
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-------------------------------
