>input_sequence_85633
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-----------------------------------------------------ATGGTGCCGGTCTTGTCGAACGCCACG
GCCCTGATCTCGCCCAGCGACTCGAGGACGTCCCCTCCCTTGACGAGGACCCCCATCCTCGCCGCCGTCAGGAGCGCGCA
GAACGTCGCGACGGGCGTCGACAGCACCAGCGCGCACGGGCACGCGCTCACCAGCAGCACCAGCGCCAGCCTGAACCACC
GCTCCGCGTCGCGCGCCCCCAGCAGCGGCGGCAGCAGCGCCACCCCTGCTCCGAGAACCACCACGGCCGGCGTGTAG---
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>chr5D_1_TraesCS5D01G392800
CACCGGGCGCCAGGCGACCGCGAGCGCGAGGACGGCGGCCTTGGCGGCGATCGAGGACACCATGTTGACGGCGATGGTCC
GGCGGGCGCGCCTGCCGAGCCTGACGGCCTCGGGGACCCGGAGGATGTCGCTGGACATGAGCGTCGCGTGGCTGGTCTCC
ATGGCCGCGGCCGAGCCGGAGATGCCCATGGAGACGCCCACGTCCGCCGTCGCCAGTGCCGGGGCGTCGTTCATGCCGTC
GCCGACCATCATCGTCGGCCCAGCCCTCGCCTTCAGCGCGCCCACCAGCCGGACCTTGTCCTCCGGGAAGAGCTCCGAGT
GGAGCTCCTC---CAAGGCGCCGCCCAGCTGCTGCTGCGCGTGCACGGCCGCCTCCGCGCTGTCCCCCGTGAGCAGTACT
GAGCTGATGCCCATGGACGCCAGCTCTCGAATCGCTTCGGCCGCGCCGGTCCGGCAGTCGTCGGAGAACGAGAACACCCC
GACGAGGTCCCCGTCGCAGATCACGTAGCCGATCGAGACGCCTTTCAGGCCATTCATTCTTTCTGGCACTGCAAGTAAGA
AAGTTTTCCTTCTC--AAACTTCATTGATCAAGCACAG-----AATGTATGTTTGCTCTGCTCTCAGCTCACCTGTCTGA
CAGGAGGATCCCCTCGCCAAGACCCTCTTGTTCCCGACGTAGATGCGTTTCCCGTCGATCTCTCCATAGATGCCCTCGCC
GGGAAGGATGCGGAACTGGGCGACGCATTCCGGTTTCGGCTCGATGGATTTCGACTGCGCGTACTCCACGAGCGCAGCCG
CCATTGGGTGGCTGGATTTGCTCTCGATGCTTGAGATCCTGCGAGAAGAAGCTCTCATTTCAGCACGAG---TTTTCATC
AGTGAAAAGTTCAATGCCGCCCAAGAGGTGTGGCAATAGACAGTGGACACACACGTACCAGTAAAGAAGATAGCTCATCT
GAACCTTGTGCCCAACCACATCGAACATGTCGACGCTGAACTCCCCTCTGGTGATGGTGCCGGTCTTGTCGAACGCCACG
GCCCTGATCTCGCCCAGCGACTCGAGGACGTCCCCTCCCTTGACGAGGACCCCCATCCTCGCCGCCGTCAGGAGCGCGCA
GAACGTCGCGACGGGCGTCGACAGCACCAGCGCGCACGGGCACGCGCTCACCAGCAGCACCAGCGCCAGCCTGAACCACC
GCTCCGCGTCGCGCGCCCCCAGCAGCGGCGGCAGCAGCGCCACCCCTGCTCCGAGAACCACCACGGCCGGCGTGTAGTAC
CTGGCGCAGGAGTCGATCAGCCGCTGCGTCTTGGACTTGCTCTGCTGGGCCTCCTCCACCAGCCTCTCCATCTTGGCCAC
CGTGGAGTTCTCGGCGAGGGCCATTGTCCTCACGGCGATGTAGCCTGCATCACAGTAGGCTCAGATCACCACGAGAATGT
CGCTGCCTTCAAGAAAGAGAAGGAACATT----GCAGTTTTAGTACCGTCCAAGTTGAGCGTGCCGGCCCAGACCTCGGA
CTGCGGTTGCTTGGGCACCGGGTACGACTCGCCGGTGAGGCTCCTCTCATCGACCTCACTCTGCCCGTCGACCACCACGC
CATCCACCGGCACCATCTCCCCGGCTCTGACCGCGATGACGGCGCCCACACCTATGTCGCGCACGTTGACGACCTCGCCC
GTCTCCGCGAGGACTGCCTTCGGCGGGATCATGCTCATCAACGACGACATCCCGGCGCTGGCCTGACACCACATCACACT
TTGTGTTAGGAAAATTCACATTCATTCCA-----TCGATCACGGAAAGTAACTGAGGATTCTTCACACTGTAATTGTAGT
-----ACCTTGGTGCAGGCCAGGGTCTCGAGCCACTCTGCAGTGGTGAAGAGGAAGACGATGACGCCTGCCTCCGCGTAG
TCCTTGAGCGCAACCGCACCGGCAACGGCGATAAGCATGAGGATGTTGATGTCCAGCGTCAGCCTGCTGGCGGCGGCGAG
CCCTCGGAGAAGCATCGGGGGAGCGCCGGCGCAGGCCGCCCCCAGGGCCAGCCACTGCAGGGGAGGCAGGAGCCACCTGA
AGGAAGACGCGAGGAGGAGGGCGCCGCAGGCGACGATGTACGGGCTGGGCCATCGGCCGATGACCCCGCTGCTGCCGTAG
GCTCGCACCGAGGCCTCCAGGCCCGCCCCGTTCAGGACCTTGACTGATGCGTTCCGGAGTCCGGACAAGGCAACAAAGAC
GTTGAGATCGACTTG----TAAGCTTTCTTTCATGGAGATTTTGGGTTCAGATTA
>chr5A_1
CACCGGGCGCCAGGCGACCGCGAGCGCGAGGACGGCGGCCTTGGCGGCGACCGAGGACACCATGTTGACGGCGATGGTCC
GGCGGGCGCGCCTGCCGAGCCTCACGGCCTCGGGGACCCTGAGGATGTCGCTGGACATGAGCGTCGCGTGGCTGGTCTCC
ATGGCCGCGGCCGAGCCGGAGATGCCCATGGAGACGCCCACGTCCGCCGTCGCCAGCGCCGGGGCGTCGTTCATGCCGTC
GCCGACCATCATCGTCGGCCCAGCCCTCGCCTTCAGCGCGCCCACCAGCCGGACCTTGTCCTCCGGGAAGAGCTCCGAGT
GGAGCTCCTC---GAGGGCGCCGCCCAGCCGCTCCTGCGCGTGCACCGCCGCCTCCGCGCTGTCCCCCGTGAGCAGTACT
GAGCTGATGCCCATGGACGCCAGCTCTCGAATCGCTTCGGCCGCGCCGGTCCGGCAGTCGTCGGAGAGCGAGAACACCCC
GACGAGGTCCCCGTCGCAGATCACGTAGCCGATCGAGACGCCCTTCAGACCATTCATTCTTTCTGGAACTGCAAGCAAGA
AAA-TTTTCTTCTC--AAACTTCATTGACCAAGCAAAGCACCAAATGTATGTTTGCTCTGCTCTCAGCTCACCTGTCTGA
CAGGAGGATCCCCTCGCCAAGACCCTCTTGTTCCCGACGTAGATGCGCTTCCCGTCGATCTCTCCGTAGACGCCCTCGCC
GGGAAGGATGCGGAACTCGGCGACGCATTCCGGTTTCGGCTGGATGGATTTCGACTGCGCGTGCTCCACGAGCGCAGCCG
CCATTGGGTGGCTGGATTTGCTCTCGATGCTTGAGATCCTGCCA-AAGAAGCTCCCATTTCAACACGAG---TTTTCATC
GGTGAAAA-TTTCAATGCTCAGAGGTGA------------------------ACATACCAGTAAAGAAGATGGCTCATCT
GAACCTTCTGTTCGACCACATCGAACATGTCGACGGTGAACTCCCCTCTGGTGATGGTGCCGGTCTTGTCGAACGCCACG
GCCCTGATCTCGCCCAGCGACTCGAGGACGTCCCCTCCCTTGACGAGGACCCCCATCCGCGCCGCCGTCAGGAGCGCGCA
GAACGTCGCGACGGGCGTCGACAGCACCAGCGCGCACGGGCACGCGCTCACCAGCAGCACCAGCGCCAGCCTGAACCACC
GCTCCGCGTCGCGCGCCCCCAGCAGCGGCGGCAGCAGCGCCACCCCTGCTCCGAGAACCACCACGGCCGGCGTGTAGTAC
TTGGCGCAGGAGTCGATCAGCCGCTGCGTCTTGGACTTGCTCTGCTGGGCCTCCTCCACCAGCCTCTCCATCTTGGCCAC
CGTGGAGTTCTCGGCGAGAGCCATTGTTCTCACGGCGATGTAACCTGCATGACAGTAGGCTCAGATCACCGCAAGAACGT
CGCTGCCTTCAAG---GAGAAGAAACAAT----CCAGTTTTGGTACCGTCCAAGTTGAGCGTGCCGGCCCAGACCTCGGA
CTGCGGTTGCTTGGGCACCGGGTACGACTCGCCGGTGAGGCTCCTCTCGTCGACCTCACTCTGCCCGTCGACCACCACGC
CGTCCACCGGCACCATCTCCCCTGCTCTGACCGCGATGACGACGCCCACACCGATGTCGCGAACGTTGACGACCTCGCCC
GTCTCGGCGAGGACTGCCTTCGGCGGGATCATGCTCATCAACGACGACATCCCGGCGCTGGCCTGACACCACATCACACT
TTGTGTTAGGAAAATTCATATTGATTCCTTCGATTCGATCATGGAAAGTAATTTAGGATC---CACACTGTAATTGTATT
-----ACCTTGGTGCAGGCCAGGGTCTCGAGCCACTCTGCGGTGGTGAAGAGGAAGACGATGACGCCTGCCTCCGTGTAG
TCCTTGAGGGCGACGGCACCGGCGACGGCGATAAGCATGAGGATGTTGATGTCCAGCGCGAGCCTGCTGGCGGCGGCGAG
CCCTCGGAGGACCATCGGGGGAGCGCCGGCGCAGGCCGCCCCCAGGGCCAGCCACTGCAGGGGAAGCAGGAGCCACCTGA
AGGAGGACGCGAGGAGGAGGGCGCCGCAGGCGACGATGTACGGGCTGGGCCGTCGGCCGATGAACCCGCTGCTGCCGTAC
GCTCGCACCGAGGCTTCCAGGCCCGCCCCGTTGAGGACCTTCACTGGTGCGTTTCGGAGTCCGGACAAGGCAACAAACAC
GTTGAGATCGACTTGTAATTAAGCTTTATTTCATGGAGATTTTGGGTTCAGAT--
>chr5B_1
CACCGGGCGCCAGGCGACCGCGAGCGCGAGGACGGCGGCCTTGGCGGCGACCGAGGACGCCATGTTGACGGCGATGGTCC
GGCGCGCGCGCCTGCCGAGCCTCACGGCCTCCGGGACCCTGAGGATGTCGCTGGACATGAGCGTCGCGTGGCTGGTCTCC
ATGGCCGCGGCCGAGCCGGAGATGCCCATGGAGACGCCCACGTCCGCCGTTGCCAGCGCCGGGGCGTCGTTCATGCCGTC
GCCGACCATCATCGTCGGCCCAGCCCTCGCCTTCAGCGCGCCCACCAGCCGGACCTTGTCCTCCGGGAAGAGCTCCGAGT
GGACCTCCTCCAACAAGGCGCCGCCCAGCTGCTCCTGCGCGTGCATGGCCGCCTCCGCGATGTCCCCCGTGAGCAGTACT
GAGCTGATGCCCATGGACGCCAGCTCTCGAATCGCCTCGGCCGCGCCGGTCCGGCAGTCGTCTGAGAGGGAAAACACTCC
GACGAGGTCCCCGTCGCAGATCACGTAGCCCATGGAGACGCCTTTCAGACCGTTCATTCTTTCTGGAACTGCAAGCAAGA
AAG-TTTTCTTTCTCAAAACTTCATCGGTCAAGCACGT-ACCAAATGTATGTTTGCTCTGCTCTCAGCTCACCTGTCTGA
CAGGATGATCCCCTCGCCAAGACCCTCTTGTTCCCGACGTAGATGCGCATCCCGTCGATCTCTCCATATATGCCCTCGCC
GGGAAGGACGCGGAACTCGGCGACGCATTCCGGTTTCGGCTCGATGGATTTCGACTGCGCGTGCTCCACGAGCGCAGCCG
CCATTGGGTGGCTAGATTTGCTCTCGATGCTTGAGATCCTGCGAGAAGAAGCTCTCATTTCAGCACTGGATATTTTCATC
AGTGAAAT-TTCAATGCCGGCCCAGAGGACGT------------------ACACATACCAGTAAAGAAGATGGCTCATCT
GAACCTTGTGTCCAACCACGTCGAACATGTCGACGGTGAACTCCCCTCTGGTGATGGTGCCGGTCTTGTCGAACGCCACG
GCCTTGATCTCGCCAAGCGACTCGAGGACGTCCCCTCCCTTGACGAGGACCCCCATCCTCGCCGCCGTCAGCAGCGCGCA
GAACGTCGCGACCGGCGTCGACAGCACCAGAGCGCACGGGCACGCGCTCACCAGCAGCACCAGCGCCAGCCGGAACCACC
GCTCCGCGTCGCGCGCCCCCAGCAGCGGCGGCAGCAGCGCCACCCCTGCTCCGAGAACCACCACGGCCGGCGTGTAGTAC
TTGGCGCAGGAGTCGATCAGCCGCTGCGTCCTGGACTTGCTCTGCTGGGCCTCCTCCACCAGCCTCTCCATCTTGGCCAC
CGTGGAGTTCTCGGCGAGAGCCATTGTCCTCACGGCGATGTAACCTGCATGACAGTAG-CTCAGATCACCGCAAGAACGT
CGCTGCCTTCAAGAAGGAGAAGAAACAAGCCGGCCAGTTTTTGTACCGTCCAAGTTGAGCGTGCCGGCCCAGACCTCGGA
GTGCGGCTGCTTGGGCACCGGGTACGACTCGCCGGTGAGGCTCCTCTCGTCGACCTCACTCTGCCCGTCGACCACCATGC
CGTCCACCGGCACCATCTCCCCTGCTCTGACCGCGATGACGGCGCCCACACCGATGTCGCGCACGTTGACGACCTCGCCC
GTCTCGGCGAGGACTGCCTTCGGCGGGATCATGCTCATCAACGACGACATCCCGGCGCTGGCCTGA---CACATCACACT
TTGTGTTAGGAAAATTCATATTGATACCA-----TCGATCATGGAAAGTAACTGAGGATT---CATACTGTAATTGTTGT
AGGTAACCTTGGTGCAGGCCAGGGTCTCGAGCCACTCCGCAGTGGTGAAGAGGAAGACGATGACGCCTGCCTCCGTGTAG
TCCTTGAGGGCGACGGCACCGGCAACGGCGATAAGCATGAGGATGTTGATGTCCAGCGTCAGCCTGCTGGCGGCGGCGAT
GCCACGGAGAAGCATCGGAGGAGCGCCGGCGCAGGCCGCCGCCAGGGCCAGCCACTGCAGGGGAGGCAGGAGCCACCTGA
AGGAGGACGCGAGGAGGAGGACGCCGCAGGCGACGATGTACGGGCTGGGCCATCGGCCGATGACCCCGCTGCTGCCGTAG
GCTCGCACCGAGGCTTCCAGGCCCGCCCCGTTGAGGACCTTCACTGATGCGTTCCGGAGTCCGGACAAGGCAACAAACAC
GTTGTGATCGACTTGTAATTAAGCTTTCTTTCATGGAGATTCTGGGCTCAGAT--
>SNPs
--------------------------------------------------S-----------------------------
----------------------S----------------S----------------------------------------
--------------------------------------------------------S-----------------------
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---------------------------------S----------------------------------------------
-------------------------------------------------------------------S------------
------------------------------------------------S-----------------S--------S----
---S---S------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-----------------S--------------------------------------------S-----------------
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--------S-------------------SSSSSSSSSSSSSSSSSSSSSS----S----------------S--------
----------S------------------------S--------------------------------------------
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S-------------------------------------------------------------------------------
------------------S-----------------------S-------S-------------------S-S----S--
---------------S------S----S-----S-------S--------------------------------------
------------------------------------------------S-------------------------------
-S--------------------S-----------------------------S---------------------------
-----S--------------------------------------------------------------------------
------------------S---S------------------S------------------SSS-----------------
---------------------------------------------------------------------------S----
--------S--S--S-----------------------------------------------------------------
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----S---------------------------------------------------------------------------
--------------S-----------------S--------S-----------------------------------S--
-----------------------------------------------------SS
>forward_783
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-------------------------------------------ATGGATTTCGACTGCGCGTA-----------------
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>reverse_2193
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--------------------------------CAGGACCTTGACTGATGCGT----------------------------
-------------------------------------------------------
