>input_sequence_85601
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---ATGGATTTACCTGGACCAATACATGAGATTCTTATGCTATTTGGGGGATTTGTTCTTCTACTAGGGGGTCTAGGAGT
AGTATTACTTACCAACCCCATTTATTCTGCCTTTTCGCTGGGATTAGTTCTTGTTTGTATATCCTTATTCTATTTTTTAT
TAAATTCCTACTTTATAGCTGTCGCACAACTTCTTATTTATGTGGGAGCCATAAATGTCTTGATCATATTCGCTGTAATG
TTCGTAAATGGCTCGGAATGGTCTTAA-----------------------------------------------------
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>chr5A_1_TraesCS5A01G010700
GGACGTGACTCTCTCCCAGTGGCGCAAGGGCGCGCAATGGTTCGAGATGGACCGGCGCCTCGCCGTGTTTGTGATCGCCG
ACGAGCGTTACTACCCGCGGTTCCGGACTGAGTGCCGAGCGCCATGCTATGTGGACGAGCACTACCTTCCGACCGTGCTC
TCCATCGAGGCTCCGGAGCGCATCGCCAACCGGAGCATCACCTTGGTCGATTGGTCCCGCGGCGGCGCGCACCCGGCCAC
CTTCGGCGCTGCCGACGTGACTGAGGACTCCCTGGGGATGCTGGTGGGGAAGAAGGGGAATGCTGAGAGGTGCATGTACA
ACGGGCAGCCGGTCGAGGTGTGCTTCCTCTTTGCGAGGAAGTTCGCCCCCGCCGCTTTGCCGCAGCTGCTCAGCCTTTCC
TCCAAGATCTTCGGGTACTAGCTAGGCCTTTTACGAAATTGATTTTGGTCTGCTTATGTATAGCTCATACTCACTGGAGC
GGAATAGAGGAATACAATTTTTTT------ATGTGTCACG-AGAACAAAAGGATGAATGATCGAGTGGGTAGTTGTTTCT
TATAACCATTCTTATTTCTGATACCTTAAGGCTCCTTTAATTCAAAGGAATTTTATAGGATTTCTAGAGGATTGAGGTTC
TTAGGA-TTTTTTCCTATGTTGGCCATTTGAATCATAAGACTGGATCCCATAGGAATTT------TAG-------AATTT
TTTGTATTACATTTCATACGAAATCTAATATCCACTCCAACCTCTTTTTACAATTTCTTTGTTTTTTCTGTGGCATCAAA
CACTCATTGCTAATCTTATAAGATTCAAGTGGGCAT-GGCACTTCAACCCTATACTTTCCTAT-TCCTATGTTTTCAAAA
TTCTACGAATCAAAGAGGCCCTTATA-TTT--TTTCTGAATCAATACCTTAGAGCACATATCTATAC--CTACTATT---
------------AAACTCCTTGAATCCTTTAGTTTTAGTCAGTTCATGAAAAATTTTATACTATTAATTTCTTTTTATCC
ATAATGGATTTACCTGGACCAATACATGAGATTCTTATGCTATTTGGGGGATTTGTTCTTCTACTAGGGGGTCTAGGAGT
AGTATTACTTACCAACCCCATTTATTCTGCCTTTTCGCTGGGATTAGTTCTTGTTTGTATATCCTTATTCTATTTTTTAT
TAAATTCCTACTTTATAGCTGTCGCACAACTTCTTATTTATGTGGGAGCCATAAATGTCTTGATCATATTCGCTGTAATG
TTCGTAAATGGCTCGGAATGGTCTTAAGTATTCTTGGTCCGTCATATTTTTTTTGCTGAAAGTCCCTATACTTTTTAAGA
ATTAACCCACAATCTAGAAAAACGGATC---GTTCCTGAAGTTTGTCTGTCCACGGGTGGG-TACACGTTCATCTTCCTC
ACTTGGGTCGAACTGGGCCGCCCTTGCTATTTCTTCTGCCAACGGCAAGCAGCGAAAAATATGTATACTTGTGAAAGATT
CGAACTCCAGACCTCAACTTTAACCCGATAGTACCAACCAACTCACATAGCCTATGATTTGCGCCAA-------------
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------GCAAAGGAAGGAGCGCTCCGGGTTTATTAGGCCCCCTTTTATTTTGCATCAAATTTTGCCCATGAATTTGAACT
TATAAAATGTGAATTATAGTATTTCATAATAATTATACCATGGAAAACCTCTTTGAAATACAAATCC-------------
--------------------ATCAATCTAGTTTTTATAGCATATCCTTTATATATTTTTACTCAAATAGATGGTTAAAGT
TGGACCTAAAATATAAGGGGTCTAATAAACCCGGACGGAGGGGGTACTAATTTGAATGACGTGA----------------
----CTGTGGGTTGCATACCTGCTATTCTACACAGACTCGTGGGATGGTGCTTATTTATTATGGCCTTGAAACAAGGGAA
CTAAACCTGGCAATAAAGGTAATTGTGGGCAACAAAGGCATTAAATCTCCTCTAAGCTAGGAGAATAAAGTTGTAGTTAT
CCTTATGGCCCTACAATCTTCTTTCCGGTTTATAGGGCTTATCTCAAAATTTTAGTTTTTTCATTTTTAACACTTAATTT
GGTTGATTCCCATCATAAGTTCAGCTTCCAAGGTGCATTAAATCATTCCATGCAAGTATTGAGGCTGGTCACAATGGGCA
AGAACATAAGCTAGTAACTTACACACTTTCCTAGACTATGTTACTACCTCCATAGTGGATAGGAACATCTATGTAGTGTC
ATGCAACGATATATTTATTAGGTTATAGACTCATTGTTTCTTGGAGTGTGTGATGTTCCGGTA
>chr5D_1
GGACGTGACTCTCTCCCAGTGGCGCAAGGGCGCGCAGTGGTTCGAGATGGACCGGCGCCTCGCCGTGTTCGTGATCGCCG
ACGAGCGGTACTACCCGCGGTTCCGGACCGAGTGTCGGGCGCCGTGCTACGTGGACGAGCACTACCTTCCCACCGTGCTC
TCCATTGAGGCGCCGACGCAAATCGCCAACCGGACCGTCACCTTGGTCGACTGGTCCCGCGGCGGCGCGCACCCGGCCAC
CTTCGGCGCCGCCGACGTGACCGAGGACTTCCTGGGGATGCTGGTGGGGAAGAAGGGGAATGCTGAGCGGTGCATGTACA
ACGGGCAGCCGGTCGAGGTGTGCTTCCTCTTTGCGAGGAAGTTCGCCCCCGCCGCGTTGCCGCAGCTGCTCAGCCTTTCC
TCCAAGATCCTTGGGTACTAGCTATGCCTTTTACTAAATTGATTTTGGTCTGCTTATGTATAGCTCATACTCACTGAAGG
GGAATAGAGGAATACAATTCTTTTTTT---ATGTGTCAC-AAGAACAAAAGGATGAATGATCGAGTGGGTAGTTGTTTCT
TA--ACCATTCCTATTTCTGATACCTTAGGGCTCCTTTGATTCAAAGAAATTTTATAGGATTTCTGGAGGATTTAAATCC
TTAGGATTTTTTCCCTATGTTGGTCATTTGAATCATAGGATTGGATCATGTAGGAATTTTTCCTATAG-------AATCT
TTTGTACTACATTTCATAGGAAATCTAACATCCAGTCCAACCTCTTTTTACAATTCCTTTATTTTTCCTGTGGCATCAAA
CACTCATTGCTAATCTTATAAGATTCAAGTAGGCAT-GCCACTCTAATCCTATACTTTTCCTATTTCTATGTTTTCAAAA
TTCTACGAATCAAAGAGGCCCTTAAAGTTT--TTTTTGAATCAATACCTTAGAGCACATATCTATATACCTACTATT---
------------AAGGGAA-------------------------------------------------------------
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------------------------TAAGTATTCTTGGTCCGTCAGATATTTTTGCTG-AAAGCCCCTATACTTTTTAAGA
ATTAACCCACAATCTAGAAAAAAAATGATTTGTTCCCGAAGTTTGTCTGTCCACGGGTGGGCTACACGCTCAGCTTCCTC
ACATGGGTCG----------------------------------------AGCGAAAAATATGTATACTTGTGAAAGATT
TGAACTCCAGACCTTAACTTTAACCCAATAGTACCAACCAGCTCACCTAACCTATGATTTGTGCCAAAAACAAGGTCGTT
TCCAAATTTTATAGTCTCACCTTGCTG-TTTGTGCCAAATTTCACCCATTTTTATATCTCCATGAATTGCCTAGAAAATA
AGCAAGCCG-CTCCAAAACTAAAGCCCGTAAATTGTGCCTTTGCCTGCACTTTGAAGAGAGACCAAATAAAGGAAGGAAT
GGGGTATTATGCTAATTTCAAGGGGTGCATGACAA---------------------------------------------
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--------------------------------------------------------------------------CATCGG
CACCAAGCAAAGGAAGGAGCCCTCCGGGTTTATTAGGCCCCCTTTTATTTTCCACCAAAGTTTGCCCATGAATTTGAACT
TATAAAATGTGAATTATA---TTTC---ATAATTATACCATGGAAAACCTCTTTGAAATACAAATCCGTCCACCCGCAAA
AAAAAAAGAAATACAAATCCATCAATCCAGTTTTTATAGCATATCCTTTATATATTTTTAGTCAAATAGATGGTTAAAGT
TGGACCCAAAATATGAGTGGTCTAATAAACCCGGACAGAGGGGGCACTAATTTGAATGACGTGA----------------
----TTGTGGGTTGCATTGCTGCTAATCTAAACAGACTCGTGGGATGGCGCTTATTTATTATGGCCTTGAAACAAGGGAA
TTAAATCTGGTAATAAAGGTAATTGTGGGCAACAAAGGCATTAAATCTCCCCTGAGCTAGGAAAATAAAGTTGTAGTTAT
CCTTA---------------------------------------------------------------------------
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>chr5B_1
GGACGTGACTCTCTCCCAGTGGCGCAAGGGCGCGCAGTGGTTCGAGATGGACCGGCGCCTCGCCGTGTTCGTGATTGCCG
ACGAGCGGTACTACCCACGTTTTCGGACCGAGTGTCGGGCACCGTGCTATGTGGACGAGCACTACCTTCCCACCGTGCTC
TCCATCGAGGCTCCGGAGCGCATCGCCAACCGGAGCATCACCTTGGTCGACTGGTCCCGCGGCGGCGCCCACCCGGCCAC
CTTCGGCGCCGCCGACGTGACTGAGGACTTCCTGGGGACGCTGGTGGGGAAGAAGGGGAATGCTGAGCGGTGCATGTACA
ACGGGCAGCCGGTCGAGGTGTGCTTCCTCTTTGCGAGGAAGTTCGCCCCTGCCGCTTTGCCGCAGTTGCTCAGCCTTTCC
TCCAAGATCCTTGGGTACTAGCTATGCCTTTTACTAAATCGATTTTGGTCTTTTTATGTATAGCTCATACTCACTGGAGT
GGAATAGAGGAATACAATTCTTTTTTTC--ATGTGTCACAAAGAACAAAAGGATGAATGATCGAGTGGGTGGTTTTT-CT
TG--ACCATTCATATTTCTGATTCCTTAGGGCTCCTTTGATTCAAAGGAATTTCATAGAATTTCTGAAGGATTGAAATTC
TTAGGA-TTTTTTTCTATGTTGGCCATTTGAATCATAGGATTGGATCGCATAGGAGTTT------TTCCTATGAAAATAT
TTTGTACTACATTTCATAGGAAATCTAACATCTACTCGAACCTCCTTTTACAATTCCTTCGTTTTTATTGTGGCATCAAA
CACTCATTGCTAATCTTATAGAATTCAAGTGGGCATTGCCACTCTAAACCTATACTTTTCCTACTCCTACGTTTTCAAAA
TTCTACGAATCAAAGAGGCCCTTAGAGTTTCCTTTTTGAATCAATACCTTAGAGCACATATCTATAT--CTAT-------
-ACATACTACTAAAGGGAA-------------------------------------------------------------
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------------------------TGAGTATTCTTGGTCCGTCACATATATTTGCTGAAAAGTCCCTATACTTTTTAAGA
ATTAACTCGCAATCTAGGAAAACAAATC---ATTCCCGAAGTTTGTCTGCCCACGGGTGGGCTACACGCTCAGCTTCTTC
ACATGGGCCAAATTGGGCCGCCTTTGCTA-TTGTTTTGTCAACAGCAAGCAGCGAAAAATATGTATACTTATGAAAGGTT
CGAACTCCAGACCTCAACTTTAACCCAATAGTACCAACCAACTCACCTAGCCTATGATTTGTGCCAAAAGAAAGGTCGTT
TCCTAATTTAATAGTCTCACCTCGCTGTTTTGTGCCAAATTTCACCCATTTTTATATCTCCATGAATTGCCTAGAAAATA
AGCAAGCCG-C-CCAAAAATAAAGTCTGTAAAATGTGTCTTTGCCTGCACTTTAAAGAGAGACCAAATAAAGGAAGG---
-GGGCATTATGCTAATTTAAGTG---------------------------------------------------------
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----------------------------------------------------------------------------TCGG
CACAAAGCAAAGGAATGAGCGCTCCAGGTTTATTAGGCCCCCTTTTATTTTGCACCAAAGTTTGCCCATGAATTTGAACT
TATTAAATATGTATTATA---TTTCATAATAATTATACCATGGAAAACCTCTCC--------------------------
-------GAAATACAAATCCATCAATCTAGTTTTTATAGCATATCATTTATATATTTTTAGTCAAATAGATGGTTAAATT
TGGGCCCAAAATATAAGGGGTCTAATAAACCCGGATGGAGGGAGTACTAATTTGAATGACATGA----------------
----TTGTGGGTTGCATTGTTCCTAATCTAAA-AGACTCGTGGAATGGCGCTTATTTATTATGGCCTTGAAACACAGGAA
TTAAATCTGGAAATAAAGGTAATTGTGGGCAACAAAGGCATTATATCTCCCGTGAGCTAGGAAAATAAAATTGTAGTTAT
CCTTACGACCCTA-------------------------------------------------------------------
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>chr3B_1
GGATGTGACTCTCTCCCAGTGGCGCAAGGGCGCACAGTGGTTCGAGATGGACCGGCGCCTCGCCGTGTTTGTGATTGCCG
ATGACCGGTACTACCCGCGGTTTCGGACCAAGTGCCGAGCGCCGTGCTACGTGGACGAGCACTACCTCCCGACCGTGCTC
TCCATCGAGGCTCCGGAGCGCATCGCCAACCGGAGCATCACCTTGGTCGACTGGTCTCGCGGCGGCGCGCACCCGGCCAC
CTTCGGCGCCGCCGACGTGACTGAGGACTTCCTGGGGATGCTTGTGGGGAAGAAGGGGAATGCTGAGAGGTGCATGTACA
ACGGGCAGCCGGTCGAGGTGTGCTTCCTCTTTGCAAGGAAGTTCGCCCCCGCCGCGATGCCACAGCTGCTCCACCTTTCC
TCGAAGATCCTTGGGTACTAGCTATGCCTTTTACTAAATTGATTTTGCTCTGCTTATGTATAGCTCATACTCACTGGAGG
GGAATAGAGGAATACAATTCTTTTTTTTTCATGTGTTAC-AAGGACAAAAGGATGAATGATCGAGTGGGTAGTTGTTTCT
TA--ACG----------------CCTTAGGTCCCCTTTGGTTCAAAGGAATTTTATAGGATTTATGGAGGATTGAAATCC
TTAGGA-TTTTTTTCTATGTTGGTCATGTGCATCATAGGATTCAATACTGTAGGAATTT------TTCTTATGGAAATAT
TTTGTACTACATTTCATAGGAAATCTAACATCCACTTGAACTTCTTTTTACAATTCCTTTGTTTTTACTGTGGCATCAAA
CACTCATTGCTAATCTTATAGGATTCAAGTGGGCATTGCCACTCTAACCCTATACTTTTCCTACTCCTACGTTTTCAAAA
TTCTACGAATCAAAGAGGCCCTTAGAGTTTTCTTTTTGAATCAATGCCTTAGAGCACATATCTATAT--CTATACATCTA
TACATACTATTGAAGGGAA-------------------------------------------------------------
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------------------------TGAGTATTCTTGGTCCGTCACATATATTTGCTGAAAAGTCCCTATACTTTTTAAGA
ATTAAACCGCGATCTAGAAAAACAGATC---ATTCCCGAAATTTGTCTGTACACGGGTGTGCTACATGCTCAGCTTCCTC
ACATGAGCCAAACTGGGTCTCCTTTGCTA-TTTTTTTGTCAACGGCAAGCAGCGAAAAATATGTATACTTGTGAAAGATT
CTAACTCCAGACCTCAACTTTAACCCGATAGTACCAACCAACTCACCTAGCCTATGATTTGTGCCAAAAACAAGGTCATT
TCCTAATTTAATAGTCTCACCTCGCTGTTTTGTGCCAAATTTCACCCATTTTTATATCTCCATGAATTGCCTAGAAAATA
AGCAAGCCGCC-CCAAAAAGAAAGTCTGTAAATTGCGTCTTTGCCTGCTC---GAAGAGAGACCAAATAAAGGAAGG---
-GG-CATTATGCTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCAG
CACCAAGAAAAGGAATGAGCGCTCCGGGTTTATTAGGCCCCCTTTTATTTTGCACCAAAGTTTGCCCATGAATTTGAACT
TATAAAATATGAATTATA---TTTCATAATAATTATACCATGGAAAA-CTCTTC--------------------------
-------GAAATACAAATCCATCAATCTAGTTTTTATAGCATATCATTTATATATTTTGAGTCGAATAGATGGTTAAAGT
TGGGCCCAAAATATAAAGGGTCTAATAAACCCGGATGGAGGGGGTACTAATTTGAATGACGTGAAATGGCGTGTGTACTA
ATTTTTATGGGTTGCATTGTTGCTAATCTAAA-AGACCCGTGGAATGGCGCTTATTTATTATGGCCTTGAAACACAGGAA
TTAAATCTGGCAATAAAGGTAATTGTGGGCAA--AAGGCAGTAAATCTCCCGTGAGCTAGGAAAATAAAGTTGTAGTTAT
CCTTA---------------------------------------------------------------------------
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>SNPs
------------------------------------S-------------------------------------------
-------S--------------------S--------------S------------------------------------
--------------------------------------------------S-----------------------------
---------S-------------------S--------------------------------------------------
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---------S-S------------S---------S--------------------------------------------S
-------------------S-------------------S----------------------------------------
--SS-------S----------------S---------S--------------------------S---------SS---
-------------------------------------S--S-------------------------------------S-
------S-----------S---------S--------------------------S----------S-------------
--------------------------------------S----SS-------------S-SSS-----------------
------------------------S----------S------------------------------S-------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS--------------------S--S-----SSSSS----------------------
-----------------------S------------S-------------------------------S---S-------
--S-------------------S------S--S--S--S-----------------------------------------
----------------------------------------------S--------------S------------------
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------------------------------------------------------S----S--------------------
------------------SSS-----------------------------------------------------------
------------------------------------------------------------S-------------------
------S-------------------------------------------------------------------------
----S------------SS------S----S-----------------S-------------------------------
S----S--------------------------------------------S--S--------S-----------------
-----S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_211
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-------------------------------GGAGCATCACCTTGGTCGAT-----------------------------
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>reverse_1144
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-----------------------ATTCTGCCTTTTCGCTGGGA-------------------------------------
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>forward_844
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------------------------TTCAAGTGGGCATGGCACTT------------------------------------
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>reverse_2842
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-----------------------------------------TGGAGTGTGTGATGTTCCGG--
