>input_sequence_85552
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----------------------------------------------------ATGGCAAAGCTAGCGATGCCGCTCGCTG
CGACGTTCCTGGCACTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCCGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCG
GCGGGCATGTGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTG
CACGGTGGCGAGCAGTGGCGCCGCAGCTGCGGAGGCGTCCGTCGGCAAGCCCGTGGGGAGCAACCGCACCCCATAG----
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--
>chr2D_1_TraesCS2D01G348700
TCAAACTCGTGTAGAACATTTTAAAATAATAATTTAATTT-TTAGCACATTCAGATAATGTTGATGTATGTTCATAAAAA
TCAAATCAAAATTTGAAACATAGCTTGGAAAATAAAAAAACAAATTCAACACTAAATTGTATATAGCACAAGTTGGACTT
TAGATTTGGCCCATTATCGGACCGATGTCAAATTTGTCAGTTGTATTCTCGAGCAATGTTTCAAATTTTAATATGAAATT
TTGTGACAACATATATTAATGTTGTTTCAATGTCCTATAATTTTTTCAGATTTTATCAAACATTTAAATTAGTTGTGACA
TCCGGTGCATCGATGGTATCACAAGGGTGGGGTACTAGACACATTCCCACGATACCCGAGATTGCCACTCGGTTCATCGG
CTGATCGGTACGCCGCAGTAGCTTAGACCTCCTTTGCTTTACAGGAATTTTAAAGGGAAAAAATTGTAGGAGTTTTTTTT
GGAGCCCTTTGGTACATATAGGAATGGA-TCCTATTCCTATGTAGGATAAGAACCAATCGATCACATTTCAAAAGAAAAT
ATTACCCTAAATTCAATGAAAAGATCCCTATGCTATGCATCGAATTGCATGTCTTTTCCCATAAAAATTAAGATACGTAT
CATTTCACCTCCTATTCTATGAACCAAAAAAAAAAAAGCCTTTGATAGATAAGACATTTTAGATGGCCCGGTCAGCAGCC
ACCGTTCCGGACCGGGGACATCATCACCGTTGGCCGTGCGTGGTCGCTGCAGTTGTGCCTATATATGGCTAACAAACCGA
GATAAGATGCGCGTCATCATTTGCATATGTGTAACGTCCAAGCGTAATCTCATCATCACGCCTGCCCA-----TCATATT
TTCCTTTTCTGCTATCGAACTCGCTTATATAAACCACCACACCAGGCGGAACTTCCTCCACCTCAA----AATAGCTGTT
CCACA-CAACAGCAGGACCTTAACCAGTTACCCGGCAACTTGTCAAGCACAGATGGCAAAGCTAGCGATGCCGCTCGCTG
CGACGTTCCTGGCACTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCCGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCG
GCGGGCATGTGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTG
CACGGTGGCGAGCAGTGGCGCCGCAGCTGCGGAGGCGTCCGTCGGCAAGCCCGTGGGGAGCAACCGCACCCCATAGGTGA
CGCGGGTGCA--CCTGCCTCAACTCCCAGGCCTGAAATGTGATGATCGTCCGATCT--TAATAGAATAAAGCTAAGTAAG
TGGG--TTACTGGGAGCTAAGTGTAGCA----------------------------------------------------
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------------------------------------------------------------AATACGTACCGAGTGAGTAC
CTCGTAGATGGCCAGAGCAGTGTTGTCGAGAAG---GAAATAAGCCATGGACAACA--ACGGTTGTTCGATATATTTGAA
TAAAAAATGTTTTACCGAATTATCATTTTGCATCCATCATAAATTGCACTTGGTATTTGCTACCGCCTAGCCTACAAAAA
CGTCTTGTACTTTGATATGAAGGTAATA---TCAACTACTCGAAAAATGAATGTAGTCGGCTCCAGTAGGGCAGCGGCGA
CAACAGCGCGTCAGTGGCTCGTTCTAACACCGGCAGTGGTTGTTCGGGGGTCTCAGAATCTCAATGTAATTTTTATTATG
TTTGAGGTGCTTTGTACTTTCGGTGAACATTGATAATATATCTGGATCATTTTTCATAAAAAAATGAATTTGAAATAAAT
TGAGAGAGAGAGAGAGAGCGCACAGTGCTAGGAAGCCAAGATGAGAGCGGCCCGGATGGGCACGACATTACCGGCAAAGG
CGAGGCCGCGACGTGACCCATGAGGGTCCGATAAGCACCTCACCATATCTGAGAGGTAGGGAAAAAATCGGACCGGGGAG
AGAGATCATGTGCTATGGCGAATCAAGCCAGAAAATAAGACGGTTGGAGGAAGAAGAAAAAAATGATCCATCTGTTCGTT
TCCGATCCAATGGCTCAAAGCTATTATTTTTTTATCGCCGAAACTGAAAAGAAAATCTGTTTTTTAGCATGGAAAAGAAG
ATCAGTTACCTCTCAAAAGGATTGATTATTGTTGTGTTTGTGTCGAATACAGTGTACAAGTTGGGTTACGTTTGGACTTG
GTGTTGTAGTGTGGATAGGATACGTGTAGTGTCGGAGTCGGACACGTTATACCCTTGGCCTCTTATATATGAGGAGGCAC
CC
>chr2A_1
TCAAACTCGTGTAGAACATTTTAAAATATTCATTTAATTTTTTAGCATATTCAGACAATGTTGATGCATGTTCATAAAAT
TCAAATCAAAATTTGAAACATAGCTTGGAAAATAAAAAA-CAAATTCAACACTAAATTGCATATAGCACAAGTTGGACTT
TAGATTTAGCCCATTATCGGACAAATGTCAAATTTGTCAGTTGTATTCTCGAGTAATGTTTCAAATTTTAATATGAAATT
TTGTGACAACATATATTAATGTTGTCTCAATGTCCTATAATTTTTTCAGATTTTATCAAACATTTAAATTAGTTGTGACA
TCCGGTGCATCGATAGCATCACAAGGGTGGGGTACTAGATACATTCCCACGATAGCCGAGATTGCCACTCGGTTCATCGG
CTGATCGCTACGCAGCAGTAGCTTAGACCTCCTTTGCTTTACAGGAATTTTAAA-GGGAAAAATTATAGAAAATTTTATT
AGTGCCCTTTGGTTTATATAGAAATGGATTCCTATTTCTATGTAGGATAAGAACCAATCCATCACATTACAAAAGAGAAT
ATTAGCCTAGATTAAATGAAAAGATTCCTATGCTACACATCAAATTGTATATCTTTCCCTGTAGAAATTAAGATACATAT
CATTTTACCTCCTATCCTATGAACCAG----AAAAAGGCCTTTGATAGATAGACA--TTTAGATAGCCCGGTCAGCAGCC
ACCGTTCCGGACCGGGGGCGTCATCACTGTTGGCCGTGCGTGGCCAATGCAGTTGTGCCTATATATGGCTAACAAACTGA
GATAAGATGCGCGTCACCATTTGCGTATGTGTAACGTCCAAGCGTAATCTCATCATCACGTCCAAGCGTAATTTCATA-T
TTCCTTTTCTGCTATCGAACTCTCCTATATAAACCACCACCCCAGGCGGAACTTCTCCATC------TCAAATAGCTGCG
CCACACCAACAGCAGAACCTTAACCAGTTACCCGGCCACTTATCAAGCACAGATGGCAAAGCTAGCGATGCCGCTCACTG
CGACATTCCTGGCCTTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCCGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCG
GCGGGCATGTGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTG
CACGGTGGCGAGCAGTGGTGCCGCAGCTGCGGAGGCGTCCGGCGGCAAGCCCGTGGGGAGCAACCGCACCCCATAGGCGA
CGCGGGTGCA--CCTGCCTCAACTCCCAGGCCTGGAATGTGATGATAGTCCGAGCTTATAATAGAATAAAGCTAAGTAAG
TGAATTTTACTGGGAGCTAAGTAAAGCAACGCTGCCGTGTAATGGA----------------------------------
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-----------------------------------------------------TATGGCTAATACGTACCGAGTGAGTAC
CTCGTAGATGGCCAGAGCAGTGTTGTTGAGAAG---GAAATAAGCCACGGACAACA--ACGGTTGTTCGATATATTTGAA
TCAAAAATGTTTTACCGAGTTATCATTTTGCATCCATCATAAATTGCACTTGGTATTTGCTACTGCCTAGCCTACAAAAA
CGTCTTGTATTTTGATATGAAGGTAATA---TCAACTA---TAAAAATGAATATAGTCGGCTCCAGTAGGGCAGCGGTGA
CAACAACGCGTCAGTGACTCGTTCTAACACCGGTAGTGGTTGTTCGGGGGTCTCAGAATCTCAATGTAATTTTTATTATG
TTTAAGGTGCTTTGTACTTTCGGTGAACATTGATAATATATTTGGATCATTTTCATCAAAAAAATGAATTTGAAATAAAT
TGAGAGAGAGAGAGAGAGCACGCAGTGCTAGGAGGCCAAGGTGAGAGCGGCCCGGATGGGCACGACATTACCGGCAAAGG
CGAGGCCGCGACGTGACCCATGAGGGTTTGATAAGGACCTCACCAGATCTGAGAGGTAGGGGGAAAATCGGACCGGGGAG
AGAGATCATGTGCTATGGGGAATAAAGCCAGAAAATAAGACGGTTGGAGGAAGAAAAAAAAAATGATCCATCAGTTCATT
TTCGATCCAATGGCTCAAAGCTATTATTTTTTGATCGCCGAAACTGAAAAGAGAATCAGTT-------------------
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>chr2B_677
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--------------------------------------CCTTTGATAGATAGAAA--TTTAGATAGCCGGGTCAGCAGCC
GCCGTTCCGGACCGGGGACGTCATCACTGTTGGCCGTGCGTGGCCGCGGCAGTTGTGCCTATATATGGCTAACAAACCGA
GATAAGATGCGCGTCATCCTTTGCATATGTGTAACGTCCAAGCGTAATCTCATCATCACGCCTGCCCA-----TCATA-T
TTCCTTTTCTGCTATCGAACTCGCTTATATAAACCACCACCCCAGGCAGAGCTTCTTCCACCTCAAGTCAAGTAGCTGTG
CCACA-CAACAGCAGGACCTTAACCAGTTACCCGGTCACCTATCAAGCACAGATGGCAAAGCTAGCGATGCCGCTCGCTG
CGACGTTCCTGACACTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCCGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCG
GCGGGCATGTGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCAGACTACTGCGGCGCGGGGTGCCAGTCGGGGCCGTG
CACGGTGGTGAGCAGTGGCGCCGCAGCCGCGGAGACGTCCGGCGGCAAACCCGTGGGGAGCGAGCGCACCCGATAGGTGA
CACGTATGCACGCCTGCCTCAACTCCCAGGGCTGGAATGTGATGATCATCCGATCTTATAATAGAATAAAGCTAAGTAAT
TGAA--TTACTGGGAGCTAAGTAAAGCAAAGCT----TGTAATGG-----------------------------------
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-----------------------------------------------------TACGGCTAATACGTACCGAGTGAGTAC
CTCCTAGATGGCCAGAGCAGTATTGTTGAGAAG---GAAATAAGCCACGGACAACA--ACGGTTGTTTGATATATTTGAA
TAAAAAGTGTTTTACCGAATTATCATTTTGCATCCATCATAAATTGCACTTGGTATTTGCTACCGCCTAGCCTACAAAAA
-GTCTTATATTTTGATATGAAGGTAATAATATCAACTATCCAAAAAATGAATGTAGCCGGCTTCAGTATGGC--------
-------------------------AACACCGGTAGTGGTTGTTCGGGGGTCTCAGAATCTCAATGTAACTTTTAGTATG
TTTGAGGTGCTTTGTACTTTCGGTGAACATTGATAATATATCTTGATCATTTTCGTAAAAAGAACGAATTTGATATATAT
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>chr2A_697
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----------------------------------------------------------TTAGATAGCCCGGTCAGCAGCC
ACCGTTCCGGACCGGGGACGTCATCACTGTTGGCCGTGCGTGGCCGCTGCAGTTGTGCCCATGTATGGCTAACAAACCGA
GATAAGATACGCGTCATCCTTTGCATATGTGTAACGTCCAAGCGTAATCTCATCATCACGCCTGCCCA-----TGATA-T
TTCCTTTTCTGCTATCGAACTCTCCTATATAAACCACCACCCCAGGCGGAACTTCTCCATC------TCAAATAGCTGCG
CCACACCAACAGCAGAACCTTAACCAGTTACCCGGCCACTTATCAAGCACAGATGGCAAAGCTAGCGATGCCGCTCACTG
CGACATTCCTGGCCTTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCTGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCG
GCGGGCATGTGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTG
CACGGTGGCGAGCAGTGGCGCCGCAGCTGCGGAGGCGTCCGGCGGCAAGCCCGTGGGGAGCGGGCGCACCCCATAGGTGA
CGTGGGTGCA--CCCGCCTCAACTCCCAGGCCTGAAATGTGATGGTCCTCCGATCC--TAATAGAATAAAGCTAAGTAAG
TGAATTG--CTGGGAGCTAAGTAAAGCAACGCTGCCGTGTAATGGA----------------------------------
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-----------------------------------------------------TATGGCTAATACGTACCGAGTGAGTAC
CTCGTAGATGGCCAGAGCAGTGTTGTTGAGAAG---GAAATAAGCCACGGACAACA--ACGGTTGTTCGATATATTTGAA
TCAAAAATGTTTTACCGAATTATCATTTTGCATCCATCATAAATTGCACTTGGTATTTACTACCGCCTAGCCTACAAAAA
CGTCTTGTACTTTGATATGAAGGTAATA---TCAACTACTCTAAAAATGAATGTAGTCGGCTCCAGTAGGACAGCAGCGA
CAACAGCGCATCAGTGGCTCGTTTTAACACTGGCAGTGGTTGTGTTGGGGT-TCAGAATCTCAATGTAATTTTTATTATG
TTTGAGGTGCTTTGTACTTTCGGTGAACATTGATAATATATTTGGATCATTTT-CATCAAAAAATGAATTTGAAATAAAT
CGAGAGAGAGATAGATAG--------------------------------------------------------------
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--
>chr2A_699
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------------------------------------------------------------AGATAGCCCGGTCAGCAGCC
ACCGTTCCAGACCGGGGACGTCATCGCTATTGGCCGTGCGTGGCCGCTGCAGCTGTGCCTAGATATGGCTAACAAACCGA
GATAAGGTGCGCGTCATCATTTTCATATGTGTAACTTCCACACGTAATCT----------------CA-----TCATA-T
TTCCTTTTCTGCTATCGAACTCTCCTATATAAACCACCACCCCAGGCGGAACTTCTCCATC------TCAAATAGCTGCG
CCACACCAACAGCAGAACCTTAACCAGTTACCCAGCCACTTATCAAGCACTGATGGCAAAGCTAGCGATGCCGCTCACTG
CGACATTCCTGGCCTTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCTGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCG
GCGGGCATGTGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTG
CACGGTGGCGAGCAGTGGCGCCGCAGCTGCGGAGGCGTCCGGCGGCAAGCCCGTGGGGAGCGAGCGCACCCCATAGGTGA
CGTGGGTGCA--CCCGCCTCAACTCCCAGGCCTGAAATGTGATGGTCCTCCGATCT--TAATAGAATAAAGCTAAGTAAG
TGAATTG--CTGGGAGCTAAGTATAGCAAAGCTGCCGTGTAATGGA----------------------------------
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-----------------------------------------------------TACGGCTAATACGTACCGAGTGAGTAC
CTCCTAGATGGCCAGAGCAGTGTTGTCGAGGAG---GAAATAAGCCTCGGACAACG--ATGGTTGTTCAATATATTTGAA
TCAAA--TGTTTTACCGC--------TTTGCATCCATGGTAAATTGCATTTGGTGTGTATCAACTA--------------
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-------------------------------------------------------TCTAAAAAATGAATTTGACACAAAT
TGAGAGAGAGAGAGATAAGATGCGCGTCATCATTTGCGTATGTGTTACGTCCAAGCGTAATCTCATT-------------
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----ATCATGTACTCGTGTGATGCAGCCCTGCCCATAATATTTCCTTTTCTGCTATCGAACTCGCTTATCTATAC-----
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>chr2B_900
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--------------------------ATATAAACCACCACCCCAGGCAGAGCTTCCTCCACCTCAAGTCAAGTAGCTTTG
CCACA-CAACAGCAGGACCTTAACCAGTTACCCGGCCACTTATCAAGCA---ATGACAAAGCTAGCGATGCCGCTCGTTG
CGACGTTCCTGACACTCGGGCTGGCAGTGCTCCTGCTGTCCGCCGCCGGTCGCGCGGTCGCGCAGAGCTGCGGCTGCCCG
GCGCACTTGTGCTGCAGCCAGTGGGGTTTCTGCAGCACGGGCCCAGACTACTGCGGCGCCGGGTGCCAGTTGGGGCCGTG
CACGGTGGCGAGCAGTGGCGCCGCAGCTGCGGAGGCGTCCGGCGGCAAGCCCGTGGGGAGCGAGCGCACACCATAGGTGA
CGTGGGTGCA--CCCGCCTCAACTCCCAGGCCTGAAATGTGATGATCCTCCGATCT--TAATAGAATAAAGCTAAGTAAG
TGGGC--TACTGGGAGCTAAGTGTAGCAAAGCTGCCGTGTAATGGATACGGCTAACGAAATTGCTCTGCATACGATTTTT
CCATTTTTCCATGTACAATTTGTCCGACCAAGTGATCATACCATTGCCGTTGTTGCATAGATTTGATCGGAGGGTGATTG
AGCAGTGTTCGTACAACGTCGTATAAAATTTGATAGTACGCCTAGCACTGCTCTACGGCTAATACGTACCGAGTGAGTAC
CTCGTAGATGGCCAGAGCAGTGTTGTCGAGAAAAACGAAATAAGCCACGGACAACATAATGGTTGTTCGATATATTTGAA
TCAAA--TGTTTTACAGAATAATTGTTTTGGATCCATCATAAATTACACTTGGTATTTACTACCGCCTAGCCTACATAAA
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--
>SNPs
----------------------------S-S----------------S-------S----------S------------S
---------------------------------------S-------------------S--------------------
-------S--------------SS-----------------------------S--------------------------
-------------------------S------------------------------------------------------
--------------S-S----------------------S--------------S-------------------------
-------S-----S----------------------------------------S--S-------S---S-SS----S--
S-S----------SS------S--------------S----------------------S--------S-------S---
----S----S---S-----------S---------SS----S-----S--S-----S--SS--S------------S---
-----S---------S----------SSSSS-----S--------------SS-SSS-------S---------------
-------------------S-------S---------------S------------------------------------
------------------------------------------------------------------------------S-
----------------------------------------S--------------------------------------S
------------------------------------S----S--------------------------------------
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-----------------------------------------S--------------------------------------
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-----------------------------------------------S--------------------------------
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-----------------------------------------S--------------------------------------
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-----------------------------------------------------S--------------------------
-------------------S-S-----------S------S---------------------------------------
---------------------------SS------S---------S---------------SS-----------------
------------------S------------------------------------S---------------------S--
-S------------------------------S-------------------S----S---SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_997
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-----------------CCTTAACCAGTTACCCGGCA-------------------------------------------
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--
>reverse_2424
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-----------------------GTGTAGTGTCGGAGTCGGAC-------------------------------------
--
