>input_sequence_85517
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-------------------------------------ATGGCCAAGGCTTGCGTGCTCCGTGGTGCTGTGCTGGTGGTGT
GCGCCCTCCTGGTTCTCTCGTCCGCATCTGCGGCGGTCGAGGCGGCTGGCCGGCAAAGGGGTCATG---GGAGAGAGGCC
ACGGCGCCCGCAGCGATGGCAATGGCGA----------GAGGGCCTTTCGTCAGGAAGCTGCTGCGGGAGGAGATGGTTA
AGGCGGACGGCCAGGGCGACATTGGCCAGTCTAAGAGGACCAGCCCGGGCGGCCCAGATCCGCAGCATCATTAG------
--------------------------------------------------------------------------------
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------
>chr1A_1_TraesCS1A01G393300
CATGGGCCCAACCTCAACCCAAAGAAACGACCGGCCAGCCAGGTCCGGGTCATGCACGTGCACGTACACGACTCCTTTGT
----TTTTT-AGATGGACACGGACGAACTTTTGCACACATGCATGCACCAAATCCATGCATTGCAGTCGTAGTGAAATCC
ACAACAATGAGCTAGCGCAGGCAGGAGTTCTCGATCGGCCGGCATGCAAGCAGTGCAAAACCTAACATATGCTCCCCCGT
TCCTAAATATATGACGTTTTGGCAGTTTAACTTGAACTATCAAAACATTATATACTCCCTTCTTCCATCTATATAGGGTC
TAATGCGTTTTTCAAAACCATCTTTGACTATTGACAAAATTAATAGTATATAAGATGTATAATATGAAAATTATATCATT
GGAAGCTTCTTTCACATAGAATTTGACAGTATGCTTTGTGTAAGTTGCATGTCATATATTATTGTTCTAACATTTAATCA
AAGTTGATTTCGAAAAATGCATTAGGCTCTATATGGATGGAAGGAGGAAGTATTTAGAAACGGGGGAATATGTGTGTATC
CAATCCACATGCGTACGCTCTATACATGGGTCGGTAGTGCAGTACACGTACTAGGCTGCTAGCTACTCCATTTGCCGGCA
TCGACA-TTTCTTGTTAATCTCTTGTCAGCACTGGCCGCGGCCCGGCGAGCCTATCCTGTCGGGTGCCATCTCGTTGTTT
---CTCGGCAGGCCAACCGCCTTATCGCATGCCGGGGCCGGCGGATTGGTGAAACCCCGTGGAAAGTGCACGGA------
---------ACAACGCAGATACGACGGAGCTACCAACCGATTTGATATGCTCTAGCTCGCGTACGTGTGCACGTACGTCG
T-----------------------------------------------CCAACTCGACGCCTATATAAACCAGCCATGTT
GCGCTCAAAATGGCATCCACATGCATCAAGGCGTACATTCACAGAGCAGA------CTGGCCGTTGCACTTGCGTTGCAG
GTACAAGTTCCTAGTAGCTAGCTAAGCTTGCATGCGCATGGCCAAGGCTTGCGTGCTCCGTGGTGCTGTGCTGGTGGTGT
GCGCCCTCCTGGTTCTCTCGTCCGCATCTGCGGCGGTCGAGGCGGCTGGCCGGCAAAGGGGTCATG---GGAGAGAGGCC
ACGGCGCCCGCAGCGATGGCAATGGCGA----------GAGGGCCTTTCGTCAGGAAGCTGCTGCGGGAGGAGATGGTTA
AGGCGGACGGCCAGGGCGACATTGGCCAGTCTAAGAGGACCAGCCCGGGCGGCCCAGATCCGCAGCATCATTAGTTTATG
CCGGTTCAAGGCGCGTCTTGTTGCGTGCATGTAGCAAATTATATTACTGCCGGCATCACATATACACAAGGAACATGAAT
TTCAAGCCCATCTAGCTTTTGTCTTGCATGCTGGCAAGAAGACTTTTTTTCAAGCATATGTATACAGTGTGCGTCGTCGT
TGGTATGTCTCCGTAGGAAACGTGACGCATCATGTCAACAGCAAGCGATCGAGGGAACGCCTTGTGCTCGTTGCACGAGC
AGTATCCCCGTGGCTCTTTTCACTATTTTGACCTTTTTAGAAAACTTTCACATAAAATGAACTCCACACAAAACTATTTC
ACGATTTGACCCTTTTGACAACGCCACAAGCTGTGGCATTTCTTCTCTATTTGAAAATGCCGCTGAGCTAGCCAGCGCAG
TGGCAGAGCCAGAA-CTTTTGCGAAGCCTGGGCAAATTTGAGCCCAAGTGTCTTATATAGGAACCAAAATCGGGTGTTCA
GATACACAACATATAAAATAGCATCAAACTTTCAAACCACAAATCCACACTAATGATGTAGTG-AAAATATAACCATAGA
AATCATACAAATGTAATTTTGGAGTGAAATAATATAATATATACTCCATTCGTCCGAAAATAAGTGTCACTGGT------
-------------------------------TTTATATTAAATTAGTATAAATTTTGTACTAAATCGACGACACTTATTT
TATTTTGACACGGAGGGAGCATTAATTCAGTT----TCATAGGCC--AAAATAACGTTGAGACTTGACAACA-TAAATTA
TAGAACCAGGCCTGCAACCAAACTCGTCATATTGCCGACGAAAATATAACTATC-CAATTAAAATTCAAATATCATAGAA
GAGACTATAAGAT-A--AAAAAAGAAGTATTTATAATTCACATAAATTAAGTATTATTATTTGTGAATATATTCAAAATA
GAGAGCTTGCAACCACTTC--ACGAGGCAATATGAGATTGTGGTTGTGGCTCCACTTATGTTTCCGATTGCACACCACTG
ACATTT
>chr1D_1
CATGTGCCGAACCTCAACCCAAAGAAACGACTGGCCGGCCGGGTCCGGGTCACGCAGGTGTGCGCGTCCATGATTCCTTG
TTTGTTATTGAAATGGACACGGACGAACTTTTGCACACATGCATGCACCCAATCCATGCAGTCGTG-CGTAGCGAAATCC
ACCACAATGAGAGCGCA----CGGGAGGTCTCGATCGGCCGGCATGCAAGCAGTGCAAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGTATC
CTACCCACGTGCGTACGCTTC--ACATCGGTTTGTAGTTCAAGT-ACGTA--------CTAGCTATTCCATTGA-CGGCT
TCGACTTTTACTTGTTAATCTCTTGGCACTACCGGCCGGGGCCCGGCCTGCCGGCA------GGCGCCATCTCGGGGTTT
---GCCGGCCGGCCAACCGCCTTATTGCACGCCGGGGCCGGCGGATTGGTGAAACCCCGTGGAAAGTGCACGGA------
---------ACAACGCAGATACGACGGAGCTGCCAACCGATTTGATATGCTCCATCTCGCGTACGTGTGCACATACGTCT
CCCTAGTGCTAA-CCAACGCGTTAAGCGCGGGCCAGGCTCTG---CGACCAACGCGACGCCTATATAAACCAGCCACCTT
GCGCTCAAATTGGCATCCGCATGCATCAAGGCGAACGCTGACGGAGCAGA------GTTGCCCTTGCACTTGCGTTGCAG
GTTCAAGTTCCTAGAAGCTAGCTAAGCTTGTACGCGCATGGCCAGTGCTTGCGTGCTCCGTGGTGCGGTGCTTGTGGTGT
GCGTCCTCCTGGTTCTCTCGTCCGCATCTGCAGCGGCCGAGGCGGCTGGCCGGCAAAGAGGTCATG---GGAGAGAGGCC
ACGGCGCCGGCGGCGATGGCAATGGCAGC-------AGGAGGGCGCTTCGTCAGGAAGGTGCTGCGGGAGGAGATGGTCC
AGGCGGGACGCCAGGGCGACATTGGCCAGTCTAAGAGGACCAGCCCCGGCGGCCCAGACCCGCAGCATCACTAGATGATG
TCGGTTCACGG-CGGTCTCGTTGCATGCACGTAG----------------------------------------------
--------------------------------------------------------------------------------
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------
>chr1B_73
TCC-----------------------------------------------------------------------------
-TTGTTTTTGAGATGGACACGGACGAACTTTTGCACACATGCATGCACCCAATCCATGCATTGCAGTCGTAGCAAAATCC
ACAACAATGAGCTAGCGAATGCGGGAGATCTCGATCAGCCGGCATGCAAGCAGTGCAAACCTAACCTATAGT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------ATAAGTGTGTATC
TAACCCACGTGCGTACGCTTTATACATGGATCGGTAGTGCAGTACGTA--------------------------------
---------------------CTAGTCAGCACTGGCCGGGGC-CGGTGACCCTATCCTGTCGGGCGCCACCTCGGAGTTT
---GCCGGCCGGGCAGCCGTGTTATCGCACGCCGGAGCCAGCAGATTGGTTGACCCCCGTGGAAAGTGCATGGA------
---------ACAACGCAGAAACGATGGAGCTGCCAACCGATTTGATATGCTCTATCCCGCGTACGACGACCAAC------
-------------------------GCGCGGGCCAGGCTCTGCGACGACCAACGCGACGCCTATATAAACCAGCCACCTG
CTGCTCAAAATGGCATCCGCACGCATCAAGGCGTACGTTCACAGAGCAGAGTTGCCGTTGCACTTGCACTTGCGTTGCAG
GTTCAAGTTCCTACCTAAGCT------TTGTACGCGCATGGCCAGTGCTTGCGTGCTCCGTGGTACGGTGCTTGTGGTGT
GCGTCCTCCTGGTTCTCTCGTCCGCATCGT-------------------CCGGCAAAGAGGTCGTCACAGGAGAGAGGCC
ACGGCGCCGGCGGCGATGGCAATGGCAGCAGCCAGCAGGAGGGCGCTTCGTCAGGAAGGTGCCGCGGGAGGAGATGGTTA
AGGCGGACGGCCAGGGCGACATTGGCCAGTCTAAGAGGACCAGCCCCAGCGGCCCAGACCCGCAGCATCATTAGATGATG
CCGGTTCACTGCCGGTCTCGTTGCATGCATG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr1B_76
---------------------------------------------------------------------------TTTGT
----TTTTTGAGACGGAGATGGACGAACTTTTGCACACATGCATGCACCC------------------------------
-----------------------------------------GCATGCAAGCGGTGCAAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGTATC
CAACCCACGTGCGTACGCCTTATCCATGGATTTGTAGTTCAAGT-ACGTAGTAGGCTACTAGCTGTTCCATTGA-CGGCT
TCGACTTTTACTTGTTAATCTCATGTCACCACCGGCCGGGGCCCGGCGACCCTATCCTGCCGGGCGCCACCTCGGAGTTT
---GGCGGCCGGCCAACCGTCTTATCGCACGCCGGAGCCGGCGGATTGGTGGAACCCCGTGGAAAGTGCACGGA------
---------AC-------------------TACCAACCGATTTGATATGCTCTAGCTCGTGTACGTGTGCACGTACGTCG
CCCTAGTGCTGG-CCAGTTACGCTCTGG---------------GACGACCAACGCGACGCCTATATAAACCAGCCACCTG
CCGCTCAGAATCTTGC-------------------CGTTCACAGAGCAGAGTTGCCGTTGCACTTGCACTTGTATTGCAG
GTCCA---AGTTC----CTAGCTAAGCTTGTACGCGCATGGCCAGCGCTTGCGTGCTCCGTGGTACGGTGCTTGTGGTGT
GCGTCCTCCTGGTTCTCTCGTCCGCATCTGCGGCACGCGAGGCGGCCGGCCGCCAAAGAGCTCATG---GGAGAGAGGCC
ACGGCGCCGGCGGCAATGGCAATGGCGA----------GAGGGCGTTTCGTCATGAAGGTGCTGCGGGAGGAGATGGTCC
AGGCGGACGGCCAGGGCGACATTGGGCAGTCAAAGAGGACCAGCCCCGGCGGCCCAGACCCGCAGCATCATTAGCTGATG
TCCGTTTACTGCCGGTCTCGTTGCATGCATG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr1D_601
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------ACGTACTAGGTACGTACTCCA-----TTACCGGGA
TCGACTTTTACTTGTTAATCTCTTGTCACCACCGGCCGGGCCCGCCCAACCCTGTCCTATCGGGCGCCACTTCGGAGTTG
TCGGCCGGCCGGCCAGCCGTGTTATCTGACGCC--GGCCGGCGGATTGGTGGAACCCCGTGGAAAGTGCACCGAAACAAC
GCAGAAACGAC-------------------TACCAACCGATCTGATTTGCTCGATGTCT----CGTGTGCACGTACGTCT
CTCTAGTGCTACACCAGTTTCGCGC-------------------------------ACGCCTATATAAACAAGCCACCAC
CCGCTCA------CATCCGCATGCACTCAGG----CGTTCACCGAGCAGATATCA-----------CTCTAGCATTGCAG
GCACAAGTAGTTC----CTGGCTACGTTTGCATGCGCATGGCCAAGGCTTGCGTGCTCCGTGGTGCGGTGCTGGTGGTGT
GCGCGCTCCTAGTTCTCTCGTCCGCATCTGCGTCGGCCGAGGCGGCTGGCCGGCAAAGCGGTCATG---GGAGAGAGGCC
ACGGCGCCCGGAGCGATGGCAATGGCGA----------GAGGGCCTTTCGTAAGGAAGCTGCTGCGGGAGGAGATGGTTA
AGGCGGACGGCCAGGGCGACATTGGCCAGTCTAAGAGGACCAGCCCCGGCGGCCCAGATCCGCAGCATCATTAG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3A_1661
GCCACT--------------------------------------------------------------------------
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-----------------------------------------------------------------------------CAG
TGGCGGAGCCAGAA-CTTTTGTGAAGCCTACGCATATTTGAGCCTAACTGTCTAATCTACAAACCAAAATCGGGTGTTCG
TATAC------------ATAACATCAAACTTTCAATGCACAAGTCCACATTAATGAAGCAGTG-AAAATATAACCATAGA
AATCATACAAATGTAATTTTAGAGTGACATAGTATAATATATACTCCCTCCATCTCAAAATAAGTGTCGGTGAT------
-------------------------------TTTGTACTTAATTAGTGCACATTTTGAACTAAATCAATGACATT--T--
---TTTGAGACGGAGGGAGTATTTA----TTTAGTTTCATAGGCC--GAAATGAAGTTGAGACTTGACACCATTAAGTTA
TAGAACCAGGCTTGCAACCAAACTCGTCATATTGCTGGCGGAAATATAACTATCTGAATTACCATTCAAATATCCTAGAA
GACACTATAAGAC-A--AAAATGG----ATTTGTAATTCACAAAAAATAAGTATTGTTATTTATGAATATATTCAAAATA
GAGAGCTTGTAGCCATCTC--ACTAGGCAATATGGGATGGCGGTTGTGGCTCTACTTATGTTTTCAATTGCACACCACTC
ACATTT
>chr3B_1664
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------AGCGCAG
TGGCGGAGCCAGAAACTTTTGCAAAGCCTGGGCAAATGTGAGGCCAAGTGCCTAACCTAGGAACCAAAATCAGGTGTTTT
GATACACAACATATAAAATA--ATCAAACTTTCAAACCACAAATCCACATTAATGATGTAGTG-AAAATATAACCATAGA
AATCATACAAATGCAATTTTGGAGTGAAATAATATAATATATGCCGCCTCCGTCCCAAAATAAGTGTCGCTGATGA----
------------------------------TTATGTACTAAATTAGTATAAATTTTGTACAAAAACGACGACACTTAT--
---TTTTAGACAGAGGGAGT----A----TTTAGTTCCATAGGCCAAAAAATAAAGTTGAGACTTGACAACA-GAAGTTA
TAGAACCAGGCCTGCAACCGAACTCGTCATATTGCCGACGGAAATATAACTATC-AAATTACCAATCAAATATCCTAGAA
GAGACAATAAGATAA--AAAATGG----ATTTGTAATTCACATAGATTAAGTATTATGATTTGTGAATATATTC-AAATA
GAGAGCTTGCAACACTCTT--ACGAGGCAATATGAGATGGTGGTTATGGCTCTACTTAAGTTTTCGATCGCACACCACTC
ACATTT
>chr3B_1664
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------AGTGCAG
TGGCGGAGCCAGAA-CTTTTGCGAAGCCTGGACAAATGTGAGGCCAAGTGCCTAACCTAGGAAGCAAAATTGGGTGTTCT
GATATACAACATATAAAATA--ATCAAACTTTCAAACCACAAATCCGCATTAATGATGTAGTGAAAAATATAACCATAGA
AATCATACAAATGCAATTTTAGAGTGAAATAATATAATACATGCC-CCTCCGTCCCAAAATAAGTGTCGCTGATGA----
------------------------------TTATGTACTAAATTAGTATAAATTTTGTACAAAAACGACGACACCTAT--
---TTTGAGACAGAGGGAGTATTTA----GTT----CCATATGCC---AAATAAAGTTGAGACTTGACAACA-TAAGTTA
TAGAACCAGGCCTGCAACCAAACTCGTCATATTGCCGACGAGAATATAACTATC-AAATTACCAATCAAATATCCTAGAA
GAGACAATCAGATAA--AAAATGG----ATTTGTAATTCACATAGATTAAGTATTATGATTTGTGAATATATTC-AAATA
CAGAGCTTGCAACCATCTC--ACGAGGCAATATGAGATGGTGGTTATGGCTCTACTTAAGTTTTCGGTCGCACACCACTC
ACATTT
>chr3B_1666
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------CGCAG
TGGCGGAGCCAGAA-CTTTTGTGAATCCTGGTCAAATGTGAGGCCAAGTGCCTAACCAAGTAATCAAAATATGGTGTTCT
GATACACAACATATAAAATA--ATCAAACTTTCAAATCACAAATCCACATTAATGAGGTAGTG-AAAATATAACCATAGA
AATCATACAAATGCAATTTTACGATGAAATAATATAATATATGCTCCCTTCGTCCCAAAATAAGTGTCGCTGATGA----
------------------------------TTATGTACTAAATTAGTATAAATTTTGTACAAAAATGACGACACCTAT--
---TTTGAGACAGAGGGAGTATTTA----GTT----CCATAGGCC---AAATAAAGTTGAGACTTGACAACA-TAAGTTA
TAGAACCAGGCCTGCAACCAAACTTGTCATATTGCCGACGAAAATATAACTATC-AAATTACCAATCAAATACCCTAGAA
GAGACAATAAGATAA--AAAATGG----ATTTGTAATCCACATAGATCAAGTATTATGATTTGTGAATATATTC-AAATA
GAGAGCTTGCAACCATCTC--ACGAGGCAATATGAGAGGGTGGTTGTGGCTCTACTTAAGTTTTCGATCGCACACCACTC
ACATTT
>chr2A_1666
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------------CGCAG
TGGCGGAGCCAGAA-CTTTTGCGAAGCCTGAGCAAATTTGAGCCCAAGTGTCTAATCTT-GAACCAAAATCGGGCGTTCA
-ATACACAACATATAAAATAGCATCAAACTTTCAAACCACAAATCCACATTAATCATGTAGTG-AAAATATAACCATAGA
CATTATACAAATGTAATTTTAGAGTGAAATAATTTAATATATACTCCCTCCGTTCCAAAATAAGCGTCGCTGATGA----
------------------------------TTTTGTACTAAATTAGTATAAATTTTGTACTAAATCAACGACACTTAT--
---TTTGAGATGGACAGAGTATTTA----TTTAGTTTCATAAGCC--AAAATTATGTTGAGACTTGACAACA-TAAGTCA
TAGAACCAGGCATGCAGCCAAACTCGTCATATTGCCGACGGAAATATAACTATCCAAATTACCATTCAAATATCCTAGAA
GAGACTATATGATAAA-AAAATGG----ATTTTTAATTCACATATATTAAGTATTGTGATTCGTGAATATATTCAAAATA
GAGAGCTTGCAACCATCTC--ACTAGGAAATATGACATGGTGGTTATTGCTCTACTTATGTTCAAGATCGCACACCACTA
ACATTT
>chr5B_1668
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CAG
TGGCGGAGCCAGAA-CTTTTGCGAAGCCTGGGCAAATTTGAGCCCAAGTGTCTAATCTT-GAACCAAAATCGGGCGTTCA
-ATACACAACATATAAAATAGCATCAAACTTTCAAACCACAAATCCACATTAATTATGTAGTG-AAAATATAACCATAGA
CATTATACAAATGTAATTTTAGAGTGAAATAATTTAATATATACTCCCTCCGTTCCAAAATAAGCGTCGCTGATGA----
------------------------------TTTTGTACTAAATTAGTATAAATTTTGTACTAAATCAACGACACTTAT--
---TTTGAGATGGACAGAGTATTTA----TTTAGTTTCATAAGCC--AAAATTATGTTGAGACTTGACAACA-TAAGTCA
TAGAACCAGGCATGCAGCCAAACTCGTCATATTGCCGACGGAAATATAACTATCCAAATTACCATTCAAATATCCTAGAA
GAGACTATATGATAAA-AAAATGG----ATTTTTAATTCACATATATTAAGTATTATGATTCGTGAATATATTCAAAATA
GAGAGCTTGCAACCATCTC--GCTAGGCAATATGACATGGTGGTTATTGCTCTACTTATGTTCAAGATCGCACACCACTA
ACATTT
>chr3A_1668
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CAG
TGGCGGAGCCAGAA-CTTTTGCGAAGCCCGGGCAAATTTGGGGCTAATTGTCTAATCTGGAAACCAAAATAGGGTGTTCG
GATGCACAACATATAAAATAGCATCAAAATTTCAAACCACAAATCCACATTAATGATGTAGTG-AAAATATAACCATAGA
AATCATGCAAATGTAATTTTAGAGTGAAATAATATAATATATACTCCCTCCGTCTCGTTGTTATATTCGTTAGATCTTAC
ATGCAGATCCGTGTCGAATTTTCTTTTAATTTATCTTCTTCTTTTTAATAGGTTTTGTCACTTGG---------------
----TTGAGACTTGATTAAG---------------TCCACATCCCCAAAAATAAAGTTGAGACTTGACAACA-TAAGTTA
TAGAACCAGGCATGTAACCAAACTCGTCATATTGCCGGCGGACC-------ATCCAAATTACCA--CAGATGTCCTAGAA
GACACTATAAGATTAAGAAAATGG----ATTTGTAATTGACATAAATTAATTATTGTGGTTTGCAAATATATTCAAAATA
GAGGGCTTGCAACCATCTCTCACGTGGCAATATGAGATGGTGATTATGGCTCTAATTATGTTTTCAATTGCACACCACTC
ACATTT
>chr6A_1668
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CAG
TGGCGGAGCCAGAA-CTTTTGCGAAGCCTGGGCAAATTTAAGCCTAAGTGTCTAATCTGGAAACCAAAATTGGGTGTTTG
GATGCACAACATATAAAACAGCATCAAAATTTCAAACCACAAATCCACATTAATGATGTAGTG-AAAATATAACCATAGA
AATCATACAAATGTAATTTTAGAGTGAAATAATATAACATATACTCCCTCTGTCTCGATGTTATACTCGTCTGATCTTAC
ATGCAGATCCGTGTCAAATTTTCTTTTAATTTTTCTTCTTCTTTTTAATAGGTTTTGTCACTTGGC--------------
-----TGAGACTTGATTAAG---------------TCCATATCCCCAAAAATAAAGTTGAGACTTGACAACA-TAAGTTA
TAGAACCAGGCCTGTAAGCAAACTCGTCATATTGCCAGCGGACC-------ATCCAAATTACCA--CAAATGTCCTAGAA
GACACTATATGATTAAGAAAATGG----ATTTGTAATTCACATAAATTAATTATTGTGGTTTGCAAATATATTCAAAATA
GAGGGCTTGCAACCATCTCTCACGTGGCAATATGAGATGGTGGTTATGGCTCTACTTATGTTTTCAATTGCACACCACTC
ACATTT
>chr3B_1672
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GGCCGAGCCAGAA-CTTTTGTGAAACCTGGGCAAATGTGAGGC-AAGTGCCTAACCTAGGAACCAGAATTGGGTGTTCT
TATACAAAACATATAAAATA--ATCAAACTTTCAAACCACAAATCCACATTAATAATGGAGTG-AAAATATAACCATAGA
AATTAGAAAAATGCAATTTTAGAGTGAAATAATATAATATATGCTCCCTCCGTCCCAACATAAGTGTCGCTGATGA----
------------------------------TTATGTACTAAATTAGTATAAATTTTGTAGAAAAACAATGACACTTAT--
---TTTGAGATAGAGAGAGTATTTA----GTT----CCATAGGCC--AAAATAAAGTTGAGACTTGACAACA-TAAGTTA
TAGAACCAGGCCTGCAACCAAACTCGTCATATTGCCGATGAAAATATAACTATC-AAATTACCAATCAAATATCCCAGAA
GAGACAATAGGAGAA--AAAATGG----ATTTGTAATTCACATAGATTAAGTATTATGATTTTTTAGTATATTC-AAATA
GAGAGCTTGCAACCATCTCACA--AGGCAATATGAGATGGTGGTTGTGGCTCTACTTAAATTTTCGATCGCACACCACTC
ACATTT
>SNPs
----S---S----------------------S----S---S-----------S---S---SS--SSSS-SSSSSS-----
-------------------------------------------------S----------------------S-------
-----------------S-S--S----S-------------------------------S-SS-S-SSSS-SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---------
---S----S----------S-------------------------------------S-------S-------S------
-----S---S----------------------------S-------------------------S---------SS----
---SS----S-------------------S--------------------------------------------------
--------------------------------------------------------------------------------
S----------------------------------------------------S----------------------SS--
------------------S-----------------S-------------------S-S---S-----------------
--------------S---------------------------------------------------S-------------
------------------------------------S---------------------S---------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------S-S---
--------S---SS----S-----S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
----S------------------------------------------------S--S-----------------------
-------------------------------------------------S------------------------------
-----------------------------------------------S-------S------------S-----------
----------------------------------S--S----------------------------------------SS
SSS-----S----------S---S-SSSS-------------------------S---------------------S---
-------------------------------------------------------S-----SS-----------S-----
---------------------SS-SSSS----S-----------------------------------------------
---------------SS---------------------S-------------S----------S---------------S
------
>forward_178
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CC
ACAACAATGAGCTAGCGC--------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>reverse_1733
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------GAAAATGCCGCTGAGCTAGC--------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
