>input_sequence_85489
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-------------------------------------------------------ATGACGAGGCTACTCCTGTGCTTCT
GCGTCTGTTTCGTCGTCCTAGTCGTCGCAGGCTCCTCCCCGGCGGATCTCCTGTCCGGTCGCTGCCCGCTG---CACCAC
CGTAGGCAGCTCGAGGACGTCGACAGGGGTGGTGGCCTGCAGGCGACGGCGGTGGCGAGCACCACGGCCGCAGTGCGGCC
ACCGCAAGAGATCGCCGATCTGGTCGTTTATGGGACCTCCAAGAGGCTCAGTCCAGGGGGATCCAACCCTCAGCACCACC
ACTGA---------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G416200
AAGCGATAGTAATTTTGTTTACACATTTTGATGTTACTTGCTTATTGTGAATTATAGATTATTGCTTTAGATCACTTTTG
TCCAAGTTCACACCACAATTGTTACATCATTTGATCAAGAACATGCTAAATAGTATTCAACATCAAAAAACAACTTTGTT
TATCATTTACCTAGCAGAGGTTGTATTCTTTCCTTTTTTTTAGGAAAGTGCAGGTTGCACTTCTTAGGGTAAATACAAAA
ACTAATGCAGGATAATACACAGCTGCACAACTGAATGGAGCATTCATGCAAGGGTGGCATTACAATTGACGTACGTGCTT
ACCTTGGAAGATCACTTGAATGTGACTCTGAGTGAACCATACGATCATCCATGACCCAAGAGGCCAAGATAGATAGCTAC
TGGTGGGTCCTGCATGCGCCGGTTTTTGGCAGGTATGTCTCTCCCTTTGACCCCCGCGGACGAGCG----CCATCATTAT
CGTTTTAATCGAACAAGTAAACTAGAGCATAATCTAACCTGAGCCTAACTGATAGAGCAGGCTCAATGCATATACACAAG
CTTAATGCGCAAGGCAATACTACTATCGAATTCAAGTATTCAATTGCAAACCCCATCAGGCAGGACT-TGAAATGACATC
TTGTCGCGCGCCTAGAAAGTCGAAGAAAATGGAGACAAAAGTGCGCTGCGTGCTCTTTTGCTTTGACCTTTCACGTTGTC
AACCACTATCCGTGTGGAAAGAGCACTTGAGCTTAGTATTTCGAAACAAGAACGCATGGTCAAGATGAAAAGTGTTTGC-
---TAGTGCATTGAGCGTTTCAGGTCATACCAGCTAGCTTTTCCATTTCTTTTAGCAGCCCAGCACTGCACCGCCTAGCC
T----TAGTGTTCATGC--TTAGCCTATAAATGCTCGTCTCCTGCTAATTAACCTGCAGATACATATGCATTACGGCAGT
TTAGGTGTAGCCACCATTTGCAGATCAACTGATCAAGTACGTACGGACGAGCTTAATGACGAGGCTACTCCTGTGCTTCT
GCGTCTGTTTCGTCGTCCTAGTCGTCGCAGGCTCCTCCCCGGCGGATCTCCTGTCCGGTCGCTGCCCGCTG---CACCAC
CGTAGGCAGCTCGAGGACGTCGACAGGGGTGGTGGCCTGCAGGCGACGGCGGTGGCGAGCACCACGGCCGCAGTGCGGCC
ACCGCAAGAGATCGCCGATCTGGTCGTTTATGGGACCTCCAAGAGGCTCAGTCCAGGGGGATCCAACCCTCAGCACCACC
ACTGATAGAACCTTGGGTGTTCATCGGTGATAAGGTGTCCATCGGCTTCATGTATAAC---TTCAGTTTGCGGCAAGACA
AGAGATTACTATTCGCAAAATAAAAATAAAAGAAAAGCCCGAGTTTAATAATTGTATAGA-GGGCTGCGTCAATTAATTC
AGATCGGAGGGTTGTAGTACGTCGATGTTCCAACTATGC---------------------------------ATGTTTCT
CCGGCTAGGCCGTTTGGAATGTTGATCTCCTGAAACGGAACAATACCGGCCTTGTCTAATCTTCGTAAAGATC-TTCTTT
TCATCAAAAGAACTAGCAGTGTGACCCGCACATTTGCGCGACTAGATTTTTTCGCATGTTTGTATATGTGCTATTTGTAT
TTTGATAGGGCCTGTAGATCAAAAGTCATGGCACTATTTTCATGTGAATATGCTCCATGAGATTATAGATGTTAATATTG
CAAGTGAATCATTGGTAAATTGATACATGCTAGTAATATATTATAAGCTAATGTTACAAATTTCATATTTCTATCTA-TT
TTTTACTTCAAAATTCATGTATATGATATAAATTGTTTAACCAATGGACTCCAAATAGATTCATATATGTGGTATATTTT
GACCTTGAGTAAATAATTATTTCACATGCAGGAGTTCATACA-AAAAA-TATTG-TTTTATTTCTTA-TTAAAAAAACTT
CACATTTCATATAGATTTTCATTTATATGGTATATCGCTTTTAAATTTCATCATGAAATCACATTCGTGGAAGTCACAAA
AAACAAT--TAAAATCAAAGCTCCAAAATGCGTTTGAATGTAACATTTTCAGAGCGTCGA--TTTTGTTTTTTACCATGC
CTTGCACCAATGTGATTTCGTGATGA-TTTTTTCATGCACACTAAACATTTAGTGTTTAGTGTTTGCCACAAACATTCCT
TAAAGTTTGCCACAAAAAGATATCATTTTTTTTTCGAAATTACTGTTCATCTAGGAGCATTTGAGCTCGAGATTTGAAAC
TCCGCATCCATTG
>chr5D_221
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------------------------------------------------------------TTCTTAGGGT-AATACAAAA
ACTAATGCAGGATAACACGCAGCTGCACAACTGAATGGAGCATTCATGCAAGGGTGGCATTACAATTGACGTACGTGCTT
ACCTTGGAAGATCACTTGAATGTGACTGTGAGTGAAGCATATGATCATCCATGACCCAAGAGGCCAAGATAGATAACTAC
TGGTGGGTCCTGCATGCGTCGGTTTTTGGCAGGTATGTCTCGCTCTTTAACCCCCGCGGACGATCGAGCTCCATCATTAT
CGTTTTAATCGAACAAGTAAACTAGAGTATAATCTCACCTGAGCCTAACTTATACAAGAGGCTCAATGCATATAGCCAAG
CTTAATGCGCAAAGCAATACTACTATCGAATTCAAGTATTCAATTGCAAACCCCATCAGGCAGGACG-TGAAATGACATC
TTGTCGCGCGCCTAGAAAGTCGAAGAAAACGGAGGCAAAAGTGCGTCGCGTGCTCTTTTGCTTTGACCTTTCACGTTGTC
AACCACTATCCATGTAGAAAGAGCGCTTCAGCTTATTATTTCAAAACAAGAACGCATGGTCAAGATGAAAAGGGTTTGC-
---TAGTGCATTGAGCGTTTCAGGTCATACCAGC----TTTTCCATTTCTTTTAGCAGCCCAGCACTGCACCGCCTAG--
--GCCTAGTCTTCATGCGTTTAGCCTATAAATGCTCGTCTCCTGCTAATTAACTTGCAGATAC--ATGCATTACGGCAGT
ATAGG--TAGCGGCCATTTGCAGATCAACTAATCAACTCCGTACGGGCGAGCTCAATGACGAGACTACTCCCGTGCTTCT
GCGTCTGTTTAGTCGTCCTTCTCCTCGCTGGCTCCTCTCCGGCGGATCCCCTGTCCGGTCGCTGCCCACTGCACCACCAC
CGTAGGCAGCTCGAGGACGTCGACGGCGGCGGCGGCCTGCAGGCGACGGCGACGGCGAGCACCACGGCTGCAGTGCGGCC
ACCGCAAGAGATCGCCGACCTGGTCGTCTATGGGACCTCCAAGAGGCTCAGTCCTGGGGGATCCAACCCTCAGCACCACC
ACTGATCGAACCTTGGGTGTTCATCGGTGATAAGGTGTCCATCGGCTCCATGTAT-AC---TTCAGTTTGCGGTAAGACA
AGAGATTACTATTCGCAAAATAAAAGGAAAAGAAAAGCTCGAGTTTAATAATTGTATATAGGGGCTGCGTCAATTAATTC
GGATCAGAGGGCTGTAGTCCGTCAATGTTCCAACT---------------------------------------------
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>chr5B_221
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------------------------------------------------------------TTCTTAGGGTAAATACAAAA
ACTAATGCAGGATAACACACGGCTGCACAACTGAATGGAGCATTCATGCAAGGGTGGCATTACAATTGACGTACGTGCTT
ACCTTGGAAGATCACTTGAAT------GTGAGTGAACCATATGATCATCCATGACCCAAGATAG-----------ACAAC
TGGTAGGTCC----TGCGTCGGTTTTCGGCAGGTATGTCTCACTCTT-GACCCTCGCGGTT----G----CCATCACTAT
CGTTTTGATCGAACAAGTAAACTC-----TAATCTAACCTCAGCCTAACTAATACAACAGGCTCAATGCATATAGCCAAG
CTTAATGCGCAAAGCAATACTACTATCGAATTCAAGTATTCAATTGCAAACCCCATCAGACGGGTACCTGAAATGACATC
TTGTCGCGCCCCTAGAAAGTCGAAGAAAACGGAGACAAAAGTGCGTCGCGTGCTCTTTTGCTTTGACCTTTCACGTTGTC
AACCACTATCCATGTAGAAAGAGCACTTCAGCTTATTA-TTCAAAACAAGAACGCATGGTCAAGATGAAAAGGGTTTGCT
AGCTAGTGCATTGAGCGCTTCAGGTCATACCAGCTAGCTTTTCCATTTCTTTTAGCAGCCCAGCACTGCACCGCCTAGCG
TAGCGTAGTGTTCATA--TTTAGCCTATAAATGCTCGTCTCCTGCTAATTAACCTGCAGATACATAAGCATCACGGCAGT
TTAGGTGTAGCCACAATTTGCAGATCAACTGATCAAGTACGTACGGACGAGCTTAATGATGAGGCTACTCCCGTGCTTCT
GCGTCTGCTTGGTCGTCGTCCTCCTCGTCGGCTCCTCCCCGGCGGATCTCCTGGCCGGGCGCTGCCCGCTGCACCACC--
-GTAGGCAGCTCGAGGACGTCGACAGCGGTGGCGGCCTGCAGGCAACGGCGGTGGCGAGCACCACGGCTGCTGTGCGGCC
ACAGCAAGAGATCACCGATCTGGTCGTCTATGGGACCTCCAAGAGGCTCAGTCCTGGAGGATCCAACCCTCAGCACCACC
ACTGATCGAA----GGGTGTTCATCGGTGATAAGGTGTCCATCGGCTTCATGTATACTTCATTCAGTTTGCGGTAAGAGA
AGAAATTACTATTCGCAAAATAAAAGGAAAAGAAAAGCTCGAGTTTAATAATTG--TATAGGGGCTGCGTCAATTAATTC
GGATCGGAGGGCTGTAGTCCGTCAATGTTCCAACTTCCATCGATCAACGCCCCTAAGCAACATGTGCCAACTATGTTTCT
CCGGCTAGGCCGTTTGGAATGTTGATCTCCTGAAACTGAACAATACCGGCCTTGTCTAATCTTCGTAACGATCTTTCTCT
TCATCAAAAGAA--------------------------------------------------------------------
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>chr5A_1551
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------AAAGAACTAGCAGTGTGACCCGCGCATTTGCGCGGCTAGATTTTTTTGCATGTTTGTATATGTGCTATTTTTAT
TATGATAGGGCCTGTAGATCAAAAGTCATGGCACTATTTTCATGTGAATATGCTCCATGAGATTATAGATGTTAATATTG
AAAGTGAATCGTTGGTAAATTGATAGATGCTAGTAATATATTATAAGCTAATGTTACAAATCTCATATTCCTATCTA-TT
TCTTACTTGAAAATTCATGTATATGATATAAATTGTTTAACCAATGGACTCCAAATAGATTCATATATGTGGTATATTTT
GACCTTGAGGAAATAATTATTTCACATGCAGGAGTTCATACAAAAAAA-TATTG-CTTTATTTCTTA-TTAAAAAAACTT
CACATTTCATATAGATTTTCATTTATATGGTATATCGCTTTTAATTTTCATCATGAAATCACATTCGTGGAAGTCACGAA
AAAAAAT--TAAAATCAGAGCTCCAAAATGCGTTTGAATGTAACATTTTCAGAGCATCGA--TTTTGTTTTTTACCATGC
CTTGCACCAATGTGATTTCGTGATGATTTTTTTCATGCACACTAAACATTTAGTGTTTAGTGTTTGCCACAAACATTCCT
TAAAGTTTGCCACAAAAAGATATCG--TTTTTTTCGAAATTACTGTTCATCTAGGAGCATTTGAGCTCGAGATTTGAAAC
TCCGCATCCATTG
>chr5A_1554
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---------GAACTAGCAGTGTGACTCGCGCATTTGCGCAGCTAGATTTTTTTGCATGTTTTTATATGTGCTATTTGTAT
TTTGATAGGGCCTGTAGATCATAAGTCATGGCACTATTTTCATGTGAATATGCTCCATGAGATTATAGATGTTAATATTG
CAAGTGAATCATTGGTAAATTGATACATGCTAGTAATATATTATAAGCTAATGTTACAAATTTCATATTTCTATCTA-TT
TTTTACTTCAAAATTCATGTATATGATATAAATTGTTTAACCAATGGACTCCAAATAGATTCATATATGTGGTATATTTT
GACCTTGAGTAAATAATTATTTCTCATGCAGGAGTTCATACAAAAAAA-TATTG-CTTTATTTCTTATT--AAAAAACTT
CACATTTCATATAGATTTTCATTTATATGGTATATCGCTTTCAATTTTCATCATGAAAACACATTTGTGGAAGTCACGAA
AAAAAATATTAAAATCAGAGCTCCAAAATGCGTTTGAATGTAACATTTTCAGAGCATCGA--TTTTGTTTTTTACCATGC
CTTGCACCAATGTGATTTCGTGATGATTTTTTTCATGCACACTAAACATTTAGTGTTTAGTGTTTGCCACAAACATTCCT
TAAAGTTTGCCACAAAAAGATATTC--TTTTTTTCGAAATTACTGTTCATCTAGGAGCATTTGAGCTCGAGATTTGAAAC
TCCGCATCCATTG
>chr4B_1554
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---------GAACTAGTAGTGTGCCCCGCGCATTTT-GCTGCTAGAC-TTTTCACATGTTTGTATATTTGCTATTTATAT
TTTGATATGGCATGTAGATCAAAAGACATATCAC-ATTTTCATGTGA-TATGCTATATAAAATTATAGATTTTAGTATTG
CAAGTGAAACATTGGTTAATTGACACATGCTATTACTATATTATAAGCTAATGTTACAAATTTCATATTTCTATTTCTTT
TCGTATTTCAAAATTGATGCATATGATAAAAATTGTTTGGCCAGTTGACTCCAAATATATTAATATATATGGTATATTTT
GACCTTGAGTAACTAATTGTTTCACATGCAAGAGTTCATACAAAAAAAATATTGATTTTATTTCATATTTAAAAAAACAT
CACATTTGAGATGGA--TTCATGTATATGGTATATTGCTTTTAA-------CATTAAATCACATTGGTGGAAGTCATGTA
AAAAAC----AAAATCACAGCTCTTAAATGTGTTGGAAAGTCACAATTTTGAACCATATATTTTG-TTATTTTACCATGC
GTTGCACCGATGTTATTTCATGAT--------------------------------------------------------
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>chr3B_1555
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----------AACTAGCAATGTGACCCGCACATTTGCGCGGCTAGATTTTTTTGCATGTTTGTATATATGCTATTTTTAT
TTTGATAGGGCCTGTAGATCAAAAGTCATGGCACTATTTTCATGTGAATATGCTCCATGAGATTATAGATGTTAATATTG
AAAGTGAATCGTTGGTAAATTGATAGATGCTAGTAATATATTATAAGCTAATGTTACAAATCTCATATTTCTATCTA-TT
TCTTACTTGAAAATTCATGTATATGATATAAATTGTTTAACCAATGGACTCCAAATAGATTCATATATGTGGTATATTTT
GACCTTGAGTAAATAATTATTTCACATGCAGGAGTTCATACAAAAAAA-TATTG-CTTTATTTCTTA-TTAAAAAAACTT
CACATTTCATATAGATTTTCATTTATATGGTATATCGCTTTTAATTTTCATCATGAAATCACATTCGTGGAAGTCACGAA
AAAAAAT--TAAAATCAGAGCTCCAAAATGCGTTTGAATGTAACATTTTCAGAGCATCGA--TTTTGTTTTTTACCATGC
CTTGCACCAATGTGATTTCGTGATGATTTTTTTCATGCACACTAAACATTTAGTGTTTAGTGTTTGCCACAAACATTCCT
TAAAGTTTGCCACAAAAAGATATCG--TTTTTTTCAAAATTACTGTTCATCTAGGAGCATTTGAGCTCGAGATTTGAAAC
TCCGCATCCATTG
>chr4B_1569
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------------------------CCCGCGCATTTACGCTGCTAGAT-TTGTCACACGTTTGTATATTTGCTATTTATAT
TTTGGTATGGCATGTAGATCAAAAGTCATATCACTATTTTCAGGTGA-TATGCTATATAAAATTATAGACGTTAGTATTG
CAAGTGAATCTTCAGTAAATTGATACATGGTATTACTATATTATAAGCTAATGTTACAAATTTCATATTTCTATTTCTTT
TCGTATTTCAAAATTGATGTATATGATATAAATTGTTTGACCAGTTGACTCCAAATAGATTCATATATAAGGTATATTTT
GACCTTGAGTAACTAATTGTTTCACATGCAAGAGTTCACACAAAAAAA-TATTGATTTTATTTCTTATTTAAGAAAACAT
CAAATTTCAGATGTA--TTCATGTATATGGTATATTGCTTTTAATTTTCATCATGAA-TCACGTTGGTGGATGTCATGTA
AAAAAC----AAAATCAGAGCTCTAAAATGTGTTCGAAAGTCACATTTTCGGACCATATATTTTTTTTATTTTACCACAT
GTTGCACCGATGTTATTTCGTGATAAAAAATTTCATGCAC----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
---------------S----------------------------------------------------------------
---------------------------S-------------S---------------------------------S----
------------------S----------------------S-S-------------------S----------------
---------------------------S----------------------S---S-S-----------------SS----
------------S-----------------------------------------------------S-------------
-----------------------------S---------------SS---------------------------------
-----------S---S------------S------S------S-----------------------------S-------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
----------S--------SS--S----S---------------------------------------------------
--------------------------S-----S-----------------------------------S-----------
---------------------------S--------------------------S-------------------------
------S------------------------------------------------------------------S------
-------------------------SS-----------S-------------------S---------------------
S----------S------S----S-----------SSSS-----------------------------------------
------------------------------------S-------------------------------S---------S-
----------------------------------------S---------------------------------------
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--------------------------------------------S--------------------------------S--
---S-------------S-------------------------------------S------------------------
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------------------------SSS-----------------------------------------------------
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>forward_749
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---------CCGTGTGGAAAGAGCACTTG---------------------------------------------------
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>reverse_2098
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-----------------AAGCTCCAAAATGCGTTTGAA------------------------------------------
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