>input_sequence_85486
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------ATGG
CGTCGGCGGAAAGGATAACGAGGGCCGCGCTGCTGGTCACCGCGGCCGTGTTGATGCAGTGCTGCAACGCGGCCCTCGCG
GCGAGGTTGCTCGAAGGGGACGGCGG------GTGGCTGCGGCGGGGCGCCGGGTCGCTGATCATGGAGGTCCTGCCCAG
GT-----------------GCAGGCAACTCGTGCTGGAACGATCCCAAACACCCCCCGTCGTCGGGGAGCTGCCACGGCT
AGCCGCC---------------------------TCGAACCTGGCTGTAGCG----------------------GACATT
GACATGCTTGTGTAG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>chr4D_1_TraesCS4D01G278000
TAGTACTTCGTAACAATGAGCTATA-ACTGTCTCCCTTTTGACCCTTGTGTTGGCATACCTAAGTTTATGAGGATTACTC
ATGGATGGGTAAGAACACACCTCTAATAAGATGTTTGATCTGTTC------TTTTTTTATTAAATCTGCGAAAAATGTTC
ATCTTCTCATAAACCCTCTGCAACTTCTTGCAGGCCGGGTACTGGTATATGGAACTCG-ATGTCAGGTTAGATATCATAA
GCGCTGCAATGCCTTCCATC---AATGATGGTGTTCCGTGTCTCCAAGTCCGATCAGGGAGGCGCCGCGCGAGTCGAATA
GCTAGCTAGGAAACCGACCGGGGAGGTTTATTGATTACCTTACCGGAAACCCTGTCCGTCCATTTGTGCGGATCACAGAC
TTACTTATAAAATGTGGAAATTTTGGCCGAAAT-TTGACTTCCGGTTGGTTAAAAACCAGAACTAGTAT----CTATATT
CTTGCATTATGTGGTCACCCTGCTCCTCCGCTGCGCTGAGAGGCCTGCAGGCAGTGTGTGGTGTACGTTGTTTCCCTG--
-------GGTTTTTCTCCCGTGGTGATCTGAGTTTGGACAAGCC------------------------------------
--------------------------------------------------------------------------------
----------------------------------GATCGCTGCACCGGTGCAGCA-----------------ACAAGACC
GGGCTGAAACTGTCCATTTCTCCAAGATGCTGCGGTCCTGGTCTGGT-GACCGATAGATCAAATTCTACGATGCTGCGTG
CGTACGTA------------------------------------------------------------------------
----------CGTACGTACGTATAGGACCCGATAAAAAAGTCGAGTAGTACAAGCACCACCACCACCACTACAGACTATA
GAACGGACCCGGTCCGGTCCTCCGTTTTGACGGTTAACCATTGCATGCGTACGTACGCACCGAACAACAAGTACTATAAA
ACAGAACCACGAGCTTGCCTCTCTTGCACCAACTGGCCAGCAAGTTGAAGCGTTTGTCCGATCCGCTTCGGCCACTTGCT
AACTTTCTCAATCCGCAAGCCGCAAGTTGCTGTTGCCGATCATAACCCCGGCCCAGTAGAAATCAACCCAAGG-AAATGG
CGTCGGCGGAAAGGATAACGAGGGCCGCGCTGCTGGTCACCGCGGCCGTGTTGATGCAGTGCTGCAACGCGGCCCTCGCG
GCGAGGTTGCTCGAAGGGGACGGCGG------GTGGCTGCGGCGGGGCGCCGGGTCGCTGATCATGGAGGTCCTGCCCAG
GT-----------------GCAGGCAACTCGTGCTGGAACGATCCCAAACACCCCCCGTCGTCGGGGAGCTGCCACGGCT
AGCCGCC---------------------------TCGAACCTGGCTGTAGCG----------------------GACATT
GACATGCTTGTGTAGATTAATATTGGTTCATTCATTTGCTCCCG-TTCGTTTGTACA-----------------AGAGCT
TACACGCGAAAATCGGAGCCTTGGAAGCTAATTAACAGAGCTCA----------TGCTATAGCAGTGAACAATAAATAAA
CTTCAATAAAACGTAGACGTAAGATCTTGTAACCGAGCTGATTAGTTAATTGATTAACAGATCAACCTGTGCAGAAAGAT
TTCCACGGCATGCGGAGGACTTTAATTGCTTCCACTTTTGAGTTCGTTGATCAGGTCCATTTGTTGTTGCACTTC-GGTC
AGCACTTGCCGAATGTTGTTCAAGGTCATCTCTTTGACATAT----CGCCGTTGGTAACTGAATATCGGTAGTAAAAAGC
ATGGTGTCTGAATTCCTCAGGC-AGCGTGAACAGTCTAGTT----TCAACCTGAACGACATGATCGAAACTTTTCCATTC
AACGTTTATGTTCTTTGTTTATTCAAATATATGTACGCAGTCAAGTTCTTTTGGCCCCAAATACTAGGTACTATACTCTA
TACGTCTCAACCCACGTACGGACTGCATGCAGAGACCTGAAACCA--TTTTGTTTTGTTTCCTAGTTTAGGTTTTTCGAA
AGTACGTTTATGCTAGGCACGTTAGTCGATCGTGGCATATTGGCACGAGACATTTCGAACAAAATATTATCAAGCATAAT
ATCCTATTGAATTTCAGAGATTAATTAACCTGTCCGAACATTTTGGTAATCTACTGCAAATTCGAGCAGTGTGTATGAAG
CTCCAGTCATACGGAGTTCGCGTGAATAAACTGAATGCATATAGATAACTCAATGTGAAGACCAACGTTCCGAGTAATAA
TGTTTTATAAAGATGCAACGAATTTAGTGGCTAACTTTAGTCCCCAGATTTATTTCTGCTCTGCCCACCCCTGTCATATG
TGACCTTTCTGTTGTTGTTCAAGTCCAACTATGAAAGGTCAAGCTAGCATGCATGCTTGTTAGACCCGTTAGAATGGATT
AGCTCTTTGGCAGAT
>chr4B_3
--GTACCTCGTAACAATGAGCTATATATTGACTACCTTTTGA-CCTTGTGTTGGCATACCAAAG-----------TACCT
ATTTATGGGTAAGAACACACCTCTAATAATATGGTTGATGCAGTATTAGTGTTCTTTTTTTTA-TCTGC-AAAAATGTGC
ATCTTCTCATAAACCCTCTGCAACTTCTTGCAGGCCGGGTACTGGTATATGGAACTCG-ATGTCAGGTTAGATATCATAA
GCGTCGCAATACCTTCCATC---AATGATGGTGTTCCGTGTCTCCAAGTCTGATCAGGGAGGCGCCGCGCGAGTCGAATA
GCTAGCTAGGAAACCGACCGGGGAGGTTTATTGATTACGTGACCGGAAACTCCGTCCGTCCATTTGTGCGGAACACAGAC
T----TATGAAATGTGGAAATTTTGGTTGAAAT-TTGATTTG-GGTTGGTTAAAC--CAGAACTAGTATAGGACTATATT
CTTGCATTATGTGGTCACCCCGCTCCTCCGCTGCGCTGAGAGGCCCACAGGCAGTGTGTGGTGTACGTTGTTCCCCTG--
-------GGTTTTTCTCCCGTGCTGATCTGAGTTTGGACATACCGACCACGTATCTGACGCTTTTTTTTTTGAGGGTATC
TGACGCTTTTGGGGCACAGGGGTGTGGGGCACAGGGGTGTGCGGTTTCTGGCCGGTTGGGGGCGATCAGCCTCCAAGTCG
CCACTTTCCCGGAAGCTGTTGTTGCTCCCAAGTTGATCGCTGCACCGGTGCAGCAGCAGCACTGATGCCTGAACACGACC
GGACTGAAACTCTC-------CCAAGATGCTACGGTCCTGGTCTGGTCGATCGACAGATCAAATTCTACGATGCTGCTCC
AGCATTTAATCTGTTCTTTTTTTCTTTTTTTTTTGCAGGCACATTTAATCTGTTCAGCAACTCAGAAAATTATTCGGGCC
GCCTTAAACGCGTACGTACGTATAGGACCCGGTAAAAAAGTCGAGTAGTA--------ACTACTACTACAACAGAGTATA
GAATAGACCCGGTCCGGTCCTTGGTTTTGACGGTTAACCATGCATGCATACCAGCATACGCACTGAACAAGCAGTATAAA
ACGGAGCCATGAGCTCGCCCCTCCCCCACCAAGCAGCCGAGTTCAAGTGCTCGTGTTTCTCCACCTGC--------TGTC
ACCCTACTCAACTGGCAAGCGGCAAGTT------GCCGATCATAACCCCGGCCCGATAGAAATCCGCCCAAGGAAAATGG
CGTCGACGGCGAGGATAACGAGGGCCGCGCTGCTCGTCGCCGCCGTCGCGTTGATGCAGTGCTGCAACGCGGTCCTCGCG
GCGAGGTTGCTGGAAGGGGACGGCGTTGACGTGTGGCTGCGGCAGGGCGCCGGGTCGCTGATCATGCAGGCCCTGCCCAG
GGGCGGCTCGCCGCCGGGCGCAGGCAACTCGTGCTGGAACGATCCCAAACACCCCCCGTCGTCGGGGAGCTGCCACGGCT
AGCCGCCGT----CCGGCTGGCTGGCAATACACCTCGAACCTGGCTGTGGCTCGCCCGCCGTATAGCTCCTCCCGACGTT
GACAAGCTTGTTTAGATTGATGTTCGTTCATTCGTTTGCTCCCG-TTCGTTTGTACAGTGACACCTCGCGTCTAAGAGCT
CTCATGCGAAAATCGGAGCCTTGGAAGCTGATT----------------------------GTAGTGAAT----AATAAA
CTTCAATACAACGTAGACGTAAGGTCTTGTAACCGAGCTGATTAGTCAATTAATTAACAGGTCAACCTGTGCAGAAAGAT
TTCCACGGCATGCGGAGGACTTTGCTTCCAC-----TTTGAGCTCGTTGATCGGGTCCATTTGTTGCACTTCGATAGGTC
AGCATTTGCCGAATGTTGTCCAAGGTCATCTCTTTGCCATCT----CGCCGTTGGTAACTGAATATCGGTAGTAAAA-GC
ATGATGTCTTAATTCCTCGGAC-AGCGTGAACAGTCTAGTT----TCAACCTGAACGACATGATCC-AACTTTTCCATTC
AACGTTTATGTTCTTTGTTTATTCAAA-AGATGTACGCAGTCAAGTTCTTTTGGCCCAAAATACC---ACCCTAC-----
-ACGTCTCAACCCACGTACGGACCGCATGCAAAGACCTGAAACCTTTTTATGTCTTGTTTCCTA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>chr4A_3
--GTACTTCGTAAGAATGAGCTATATACTGACTACCTCTTGA-CCTTGTGTTGGCATAGCAGAG-----------TACTC
ATGGATGGGCAAGAACACACCTCTAATAAGATGTTTGATGCAGCAGTAGTGTTTTTTTTTTAAGTCTGC-AAAAATGTGC
ATCTTCTCATAAAGCCTCCGCAACTTCTTGCAGGCCGGGTACTGGTATATGGAACTCGGATGTCAGGTTAGATATCATAA
GCGTTGCAATGCCTTCCAACAATAATGATGGTGTTCCACGTCTCCAAGTCCGACCAGGGAGGCGCCGCTCGAGTCGAATA
CCTAGGAA---------------------------------ACTGTAAACCCTGTCCG-CCATTTGTGCGGATCCCAGGC
T----TGT-AAATGTGGAAAATTTGGCTGAATTATTGACTCCCGGTTGGTTAAAA--CAGAACCAGA-------------
------------------------------------------------------------------GTCGTTCCCCTGCA
CTTGACAGGTTTTTCTCCCGTACTGATCTGAGTTTGGACGGACCAACCACGTAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CTGGAACGATCCCAAACACCCGCCGTCGTCGGGGAGCTGCCACGGCT
AGCCGCCGGCCGCCCGGCCGGCTGGCAAGAGGCCTCGAACCTGGCTGTAGCG----------------------GACATT
GACATGCTTGTGTAGACTGATATTCGTTCATTCATTTGCTCCCGGTTCGTTTGTAC-----------------AAGAGCT
CCCATGCGAAAACCGGAGCCTTGGAAGCTAATAGCAGAGCTGATCACATTCTAGTGCTATCGTAGTGAAT----AATAAA
CTTCAATAAAACGTAGACGTGAGGTCTTGTAACCGAGCTGATTAGTTTATTAATTAACGGGTCAACCTGTGCAGAAAGAT
TTCCACGGCATGCCGAGGACTTTGCTTCCAC-----TTTGAGCTCGTTGTTCAGGTCCATTTGTTGCACTTCGATAGGCC
AGCATTTGCCGATC---GTTCAAGGTCATCTCTTTGACATCTCGCGCGCCGTTGGTAACTGAATATCGCTAGTAAAAAGC
ATGATGTCTGAATTCCTCGGACAAGCGTGAACAGTCTAGTTCAATTCAACCTGAACGACATG------------------
----------TTCTTTGTTTATTCAAA-ATATGTAGGCAGTCAAGTTCTTTTGGCCCAAAATACTAGTACTCTAC-----
-ACGTCTCAAACAACGTACGGACTGCATGCAGAGACCTGAGAACTTTTTTTGTCTTGTTTCCTA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>SNPs
SS----------------------------S--S--------S-----------------S---SSSSSSSSSSS-----
---------------------------------------SSSS-S-------------S----S-----S--------S-
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------S-S---------------------------------------
-SSSS---S------------------S---------------------------SS-----------------------
--------------------S------------------------SS-------------------------S-------
----------------------S-----------------SS--------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--S--------S--SSSSSSS----------S------------------S---S----------------------SSS
S-S-SS--------------------------------------------------------------------------
-------------------------------S------------------SSSSSSSS--S--S--S--S-----S----
---SS----------------SS------------------SSSSSSSSSS-SSSSSSSS-SSSS------S-S------
--S--S---S-----S---S---SSS------SSS---SSSSSSSS-SSSSSS-SS-S-SSSS-SSSSSSSSSSSS--SS
-S-S-S-----SSS------S-------SSSSSS--------------------SS--------SS--------------
-----S---SS-----------------------S---S----S-S--S-----------------------S-------
-----------S-------------S-----------------S----------------------S---S---------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-----S-------------------------------------------------------
SS--S----------------------------SSSSSSSSSSS----------------S-S------SSSSS------
-----------------------S---------------------------S--------S-------------------
-----------------------SS--S-SSSSSSS------S-----------------------SSSSS-SSS-----
----S-----------------------------------S---------------------------------------
---S--------------S-S--------------------------------------------SS-------------
---------------------------S-----------------------------S---------SSS-SSSSSSSSS
S-------------------------------------------S--------S----------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_1036
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CCACCACCACCACTACAGAC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>reverse_2610
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TGCATGCTTGTTAGACCCGT-----------
---------------
