>input_sequence_85485
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----------------------------------------------ATGTCTGGAGCCCAAGGCGCACAGCCCAAGGGAG
CTTTCACGGCGACCACGTACAGGTCGGCGGCAGCTCCCGACGGCGCGGAGGAGTG---CCAGCAGCAGCAGTCGCCAAGG
ACAGAGCTACGCTCGAGCAAGGACGAGCATGGGTTACCGGTGAAGATGCTCGAGGAGAAGGTCGAGGACGCCTCTGGGAA
GGGCGGCCCGGTGTTCGGCGCCGGCGCGGAGGACGGCAAGCCGGACCTGGGCGTCACAGGCACCGGCGGAGGCTAA----
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>chr4D_1_TraesCS4D01G206400
TCACTGGACACGGCGATTTATTATTTGCTATCGACAGT----AGCATTACTAGTCATTACAGTAGACAGACACGAGCAAG
GATGCCACTACTCGCGGACGTGGCTCCCAAGGCGCACGGTGATCCCGTCACAGTCCCTGACGTAGCCGACCTTCTGCCCC
CAGTTTTTCTGCTCCGGCGCGCTCACCGGCACCGCCCCGTTCTCCACGGCCCGCCGGTACGCGGCGTCGACGTCGTCGTA
GTCGAAGCAGATCTCCACGGGCCCTCGCTCGCGGGGCGACTTGGGCAGCTGCACCTCGCCCGTGAGTGCGTCCGTCTCCC
TCTGGTGCAGCGGCGTGAACGCGATGGTCGTCGAGCCGGTGTCCAGCTCCGCCCACCTGCGCGCAGAACAGACGATACAC
ACACATGTCAAGCTGGCCCGGCAGGCAGCTAA-GGTAGGCCTAGGCGCAAATGGTGATGGGGATTACTTGTGAGAGTCGT
CGACGCGGCGGACGCTGTAGCCGAAGGCGTCGGCGTAGAAGGCGGCCGACTTGGGCACGTCTTTGACGTAACACACGATG
TACGCGAGCTTAGGTCTCACCGCCCCAGACGCCATGGCTCGTCCCTTCCGTGGGTACGGGTGCTACTGCTAACCACTTTG
AGATGGCTCGGTGTTTGCCTTAAGCCGTGTTGCGTCTTCCTTGGCTCTCTCGATTACTGGCGCTCAGCTCTCGCCTGTGG
TTTGCCTTTTAATGCGGCCCGGAATCGCCGCGCCGTCGGCAGCTTGGGAGGTGGCGCGCATGCATGCAGTATTCTGGACT
CTTCTCTCCACGTTTCAGATCGTGCC-TTCTTCTCGGTGACACGCGTGGACTGTGGAAGGTTCAGCGGCTCCTCAGACCG
AATTCTCAGTAGGTGGCACTGACACGTAGCCACAGATCACGTCCTAGTTTAAGAAGCCGGGTGCCAGCTCTAAGACGGAA
CGCCAAAGTCCAACCCAGACCCACAGCCCAGCACCATCAAATTGCCATGTCTGGAGCCCAAGGCGCACAGCCCAAGGGAG
CTTTCACGGCGACCACGTACAGGTCGGCGGCAGCTCCCGACGGCGCGGAGGAGTG---CCAGCAGCAGCAGTCGCCAAGG
ACAGAGCTACGCTCGAGCAAGGACGAGCATGGGTTACCGGTGAAGATGCTCGAGGAGAAGGTCGAGGACGCCTCTGGGAA
GGGCGGCCCGGTGTTCGGCGCCGGCGCGGAGGACGGCAAGCCGGACCTGGGCGTCACAGGCACCGGCGGAGGCTAACTGC
TAAGCTAGTTGTTACATGGCGTGCTTTGCGCAGCACATGTATTGAAGCATAAACTGTGATGTACTCGTAGTAT-----GT
AACTTCCAAGGAGTGGAATAAGATACCCAGACCAGAATAAAAAGAAAAAGGATTGAATTCCAAGGCGACTCTCC------
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-------------------------------------------------------------TTTTATCTTCCTCCTCTT-
AAGTCATCTTCCCCA---TCTTCTTTTCCAACCGTGGCACCCCGCCTTTAGCGAGGACTTGATGAGCCCTTCCGGCGATG
CGACAGCTGACCATCATCGCCAAAACGAAAA-TCCTAC---CCACTGCCGCTCCTCCTCGCCGACGCGGACTGCCTCGC-
GTCTTCAGCCGGCCCC----CGA--GTTAGCCTTCCCTCGCCTGCTGGGCGTCGGCCCAGTTAACCATCCCGTTAAACCT
CGCCCGTGGGCATCGCGTAGATGCCGAGCGCTTAACGTCGTGGGCTATGCTCTGGAGGCCGGGCTGTTAGCTAGTTAGCT
CCGTTTTATTCTT-CATTTAGATTTACTATTTTCAGAAAAAGAAATGACCGGAAGGCTTGCATATGCATAAATAAAGTAT
GTAAAATCAACATCGGACTGTAAAATGTTTTACATGAAACTTGATTAT--------------------------------
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--------------------------AAAATGTGTAGATCATAATTATGCCATTTGTATCCACGTTTGACTTGTTTAACT
TGTTTTTACTATGTAATTAGCATTAACAGATTAATTAACATCCACGCCAAAAA--CAGATTAATTAACATACCTAATTAA
TAATAATTAATCCTACCTCATAATTAATTAATTAAATATATTGTTTTGATCAACATGATGCATAAATTTAACTTTGACCA
TAAATCCCTCCATTTCAAAATATAGCGTGTCCTCGGTTTTCGTGCTTTAACTTTGATCATAAATTTAACCAACGAAACCG
ACTGCGGCGGGTGCAAAAGTTCTACCAATGAATTCGTCTTTAAAAGAAGTTTTCAATTATATAATTTTTGCTCCCGCCGC
AGTCGGTCACATTGGTTAAATTTA
>chr4B_1
TCACTGGACATGGCGATTTATTATTTGCTATCGACAGAGTACAGCATTACTAGTCATTACAGT----AGACACGAGCAAG
GATGCCACTACTCGCGGACGTGGCTCCCAAGGCGCACGGTGATCCCGTCAAAATCCCTGACGTAGCCGACCTTCTGCCCC
CAGTTCTTCTGCTCCGGCGCGCTTACCGGCACCGCCCCGTTCTCCACGGCCCGCCGGTACGCGGCGTCGACATCGTCGTA
GTCGAAGCAGATCTCCACGGGCCCTCGCTCACGGGGCGACTTGGGCAGCTGCACCTCGCCCGTGAGCGCGTCCGTCTCCC
TCTGGTGCCGCGGCGTGAACGCGATGGTCGTCGAGCCGGTGTCCAGCTCCGCCCACCTGCGCGCAGAACAGACGATGCAC
AGACATGTCAGGCTGGCCCGGCAGGCAGCTAAGGGTAGGCCTAGGTGCAAATGGTGATGGGGATTACTTGTGCGAGTCGT
CGACGCGGCGGACGCTGTAGCCGAAAGCGTCGGCGTAGAAGGCGGCCGCCTTGACCACGTCGTCGACGTAACAGACGATG
TACGCGAGCTTAGGTCTCACCGCCCCAGACGCCATGGCTCGTCCCTTCCGTGCGTACGGGTGCTACTGCTGACCACTTTG
AGATGGCGCGGTGTTTGCCTTGAGCTGTTGTGC--CTTCCTTGCCTCTCTCGATTACCGGCGCTCAGCTCTCGCCTATGG
TTTGCCTTTTAATGCGGCCCGGAATCGCCGCTCCGTCGGCAGCTTGGGAGGTGGCGCGCATGCATGCACTATTCTGGACT
CTTCCCTCCACGTTTCAGATCGAGCCCTTCTTCTCAGTGACACGCGTGGACTGTGGAAGGTTCAGCGGCTCCTCAGACCG
AATTCTCAGTAGGTGGCACTGACACGTAGCCACAGACCACGTCCTAGTTTAAGAAGCCGGGTGCCAACTCGAAGAC-GAA
CGCCAAAGTCCAACCCA------CAGCCCAGCACCATCAAGTTGCCATGTCTGGAGCCCAAGGCGCACAGCCCAAGGGAG
CTTTCACGGCGACCACGTACAGGTCGGCGGCAGCTCCCGACGGCGCGGAGGAGTG---CCAGCAGCAGCAGTCGCCAAGG
ACAGAGCTACGGTCGAGCAAGGACGAGCATGGGTTGCCGGTGAAGATGCTCGAGGAGAAGGTCGAAGACGCCACTGGGAA
GGGTGGCCCGGTGTTCGGTGCCGGCGCGGAGGACGGCAAGCCCGACCTGGGCGTCACAGGCACCGGCGGAGGCTAACTGC
TAAGCTAGTTGTTACATGGCGTGCTTTGCGCAGCACATGTATTGAAGCATAAACTGTGATGTACTCGTAGTATGTAGAGT
AACTTCCAAGGAGTGGAATAAGATAACCAGATCAGAATAAAAAGAAAAAAGATTGAATTCCAAGGCGACTCTCC------
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-------------------------------------------------------------TTT-ATCTTCCTCCTC-T-
AAGTCATCTTCCCCA---TCTTC---CCCAACCGTGGCGCGCCGCCTTTAGCGAGGTCTTGATGAGCCCTCCCGGCGATG
CGACAGCCGACCATCATCGCCAAAACGAAATATCCTACCCACCAGTGCCGCGCCTCCTCGCCGACGCGGACTGCCTCGCC
GTCTTCAGCCGGCCAC----CCGAGGTTAGCCTTCCCTCGCCTGCTGGGCCTCGGCCCAGTTGACCATCCCGTTAAACCT
CGCCAGTTGGCGTAGCATAGATGCCGAGCGCTTAACCTCATGGGCT----------------------------------
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>chr4A_64
-------------------------------------------------------------------AGACACGAGCAAG
TATGCCACTACTCGCGGACGTGGCTCCCAAGGCGCAGGGTGATCCCGTCACAGTCCCTGATGTAGCCGACCTTCTGCCCC
CAGTTCTTCTGCTCCGGCGCGCTCACCGGCACCGCCCCGTTCTCCACGGCCCGCCGGTACGCAGCGTCGACGTCGTCGTA
GTCGAAGCAGATCTCCACGGGCCCTCGCTCACGGAGCGACTTGGGCAGCTGCACCTCGCCCGTGAGCGCGTCCGTCTCCC
TCTGGTGCCGCGGCGTGAACGCGATGGTCGTCGAGCCGGTGTCCAGCTCCGCCCACCTGCGCGCACAACAGACGATGCAC
AGACATGTCAGGTTGACCCCGCGGCCAGCT-A-GGTAGGCCTAGGCGCAAATGGTGATGGGGATTACTTGTGCGAGTCGT
CGACCCGGCGGACGCTGTAGTTGAAGGCCTTGGCGTAGAAGGCGGCCGACTTGCCCACATCTTCGACGTAACACACGATG
TACGCGAGCTTAGGTCTCACCGCCCCAGACGCCATGGCTCGTCCCTTCCGTGCGTACGGGTGCTACTGCTAACCACTTTG
AGATGGCTCGGTGTTTGCCTTGAGCTGTTGT--GTCTTCCTTGGCTCTCTCGATTACTGGCGCTCAGCTCTCGCCTGTGG
TTTGCCTTTTAATGCGGCCCGGAATCGCCGCTCCGTCGGCAGCTTGGGAGGTGGCGCGCATGCATGCAGTGTTCTGGACT
CTTCTCTCCACGTTTCAGATCGTGCCCTTCTTCTCGGTGACACGCGTGGACTGTGGAAGGTTCAGCGGCTCCTCAGACCG
AATTCTCTGTAGGTGGCACTGACACGTAGCCACGGAACACGTCCTAGTTTAAGAAGCCGGGAGCCAACTCGAAGAC-GAA
CGCCAAAGTCCAACCCA------CAGCCCAGCACCATCGGATCGCCATGTCTGGAGCCCAAGGCGCACAGCCCAAGGGAG
CTTTCACGGCGACCACGTACAGGTCGGCGGCAGCTCCCGACGGCCCGGAGGAGCGCCACCAGCAGCAGCAGTCGCCAAGG
ACAGAGCTACGGTCGAGCAAGGACGAGCATGGGTTACCGGTGAAGATGCTCGAGGAGAGGGTCGAAGACGCCACTGGGAA
GGGCGGCCCGGTGTTCGGCGCCGGTACGGACGACGGCAAGCCCGACCTGGGCGTCACAGGCACCGGCGGAGGCTAACCGC
TAAGCTAGTTGTTACATGGCGTGCTTTGCGCAGCATTTGTATTGAAGCATAAACTGTGATGTACTCGTAGTATGTAGAGT
AACTTCCAAGGAGTGGAATAAGATTACGAGATCAGAATAAAAAGAAAAAAGATTGAATTCCAAGGCGACTCTCCTTTATC
TCGAAATCACTAATTGAGAAGTGCTCGTTGCAAAGATCACTTCAACTTCCTAAGTTGCGACGTCATTTGTCTGTCATCCG
GGAGTCTTCCTTTTTTATATAGATCCGTTTATTTAAAACATTGTCTCTCAAACCGTGAGTCTAAATCTTAAACCGCTTTT
ACTGTTGAATTTCTTACGTTGAGATTCTCAAAACTAGATCTATGTTAATAGGTTTTAACGATTTTTTTTCAAAAAAAAAA
CCAGCTGAAAAAACAGAACGAAAAAACAAACCGGAAACATTGATTTTTTTTCTTTCCTGAAAGAGGCACGTCCATGTCTC
TCACAAAATTACAACTGTATCTCTCACGAAAACAAAATCGTGACTCTCGCAGAAGAGAAAAGAAAAAGAAAATACGATTT
TTCTTCCATTTTCAAGGAGGTACAACCGTAACGCTCGTGAAAGAAAAAAAATAGAAAACATGTTTTTTCTGTTTCTGAGA
GGCACGGCCGTGACTCTCGCGAAAGTACAACCGTGCCTTTCGCGGAAGCAAAACCGTGACTCTTGCGAAAGGAAAAAACA
GAAAGCGCGTTTTTTTTTCGTTTCCGAGAGGCACAGCCATGACTCTCGCGAAAGCACAACCATGCCTCTCGCGGAAACAA
AACCGTGACTCTCACAAAAAGAAAAAAACATAGAACATGTTTTTTTTCGTTTCCGAGAGGCACGGCCGTGACTCTCGCAA
AAGTAAAACCGTGCCTCTCGCGGAAGCAAAACCGTGACTCTCACGAAAGGAAAAAACGAGTTTTTTCACGTAAAAAAATA
TTTTTTTAAAAAAATTGATTAAATAGCTAAGGAAAACCGGTAAAAAACTAAAACGTAAAAAAACCATTTAAATAGCCAAA
AACATGTATGAAAAAATAAAAAAAAATAAAATTTGAAAAGACGCCCAAAACACGACATGTGACGAATGACTGAGAGCGCG
TCAAATGACGCTGATCATTGCGAGGCTCCCGAAAGAGTGCTCGTTAACTAGTGGCTTCCCTTTT-ATCTTCCTCCTC-TT
AAGTCATCTTTCCTATCCTCTTC---TCCAACCGTGGCGCCCCGCCTTTAGCGAGGTCTTGATGAGCCCTCCCGGCGATG
CGACAGCTGACCATCATCGGCAAAACGAAAAGTCCTAC---CCACTGCCGCTCCTTCTCGCCGACGCGGACTACCTCGCC
GTCTTCAGCCGGCCACCCTTCCGAGGTTAGCCTTCCCTC-CCTGCTGGGCCTCGGCCCAGTTGAGCATCCCGTTAAACCC
TGCCGGTGGGCAGTGCGTACATGCCGAGCGCTTAACCTCGTGGGTTCTGCTCTGCAGGCCGGGCTGTTAG-TAGTTAGCT
CCGTTTTATTCTTTCATTTAGATTTACTATTTTCAGAAAAAAAAACACCGGAAGCCT-------TGCATAAATAAAGTAT
GTAAAATCAACATCGGGCTGTAAAATGTTCTACATGAAACTTGATTACTACCTCCGTTTCAGTTTATAAGTCCTACGCGT
ATACCTAGGTTGTCAATTTTATCACCTTAATATAAACTATATAACACACAAATTATACGGTTTGAAAATAGAGCATCTGA
AGTTTATATTGGTATATTTTTTGTAATATATGACTTGTATTAAGTTGGTCAAATTAACGACCTAGGGGCACACGCACGCC
CTGTAAACTGAGAGAGAGGTAGTATAAAAATGTGTAGATCATAATTATGTCATTTGTATCCATGTTTGACTTGTTTAACT
TGTTTTTACTATGTAATTAGCATTAACAGATTAATTAACATCCACGCCAAAAAAACAGATTAATTAACATATCTAATTAA
TAATAATTAATCCTACCTCATAATTAACCGATTAAATATGTTGTTTTGATCAACATGATGCATAAATTTAACTTTGACCA
TAAACCCCTCCATTTCAAAATATAGTGCGTTTCCGGTTTTTGTGCTTTAACTTTGACCATAAATTTAACCAACAAGACCG
ACTGCGGCGGGTGCAAAAGTTCTACCAATGAATTCGTCTTCAAAAGAAGTTTTCAATTATATAATTTTTGCTCCCGCCGC
AGTCGGTCACGTTGGTTAAATTTA
>SNPs
----------S--------------------------S-------------------------SSSS-------------
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-----S--------------------------------------------------------------------------
------------------------------S-----------------------------------S-------------
--------S-------------------------------------------------------------------S---
-S--------S-------------------------------------------------------------S-------
-----------------------------------------------------SS--------S----------------
----------------------------------------------------S---------------------------
---------------------S---S--SS--------------------------------------------------
-------------------------------S------------------------------------------------
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------------------------------------S-----------------------------S---S-----S---
-----------------SSSSSS---------------------------------------------------------
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-----------S-----------------------------------------------------S------S-------
------------------------------------------S-------------------------------------
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-------------------------S-----S-----------------S------------------------------
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----------------------------------------------------------------S------------S--
-----------------------SSS------------S-----------------S-------------S---------
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--------------S------SS---------------------------S-----------S-----------------
----S--------S----------------------S---------S-------S---------------S---------
-----------------------------------------S---SSS-S-S-SSSSSSSSSSS----------------
----------------S------------S-----------------S--------------------------------
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-------------------------------------------------S------------S-----------------
-----------------------------------------------------------------------S--------
---------------------------SSS---------S----------------------------------------
----S--------------------S-S--SSS-------S---------------S----------------S-S----
----------------------------------------S---------------------------------------
----------S-------------
>forward_662
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--ATGGCTCGGTGTTTGCCTTA----------------------------------------------------------
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>reverse_2842
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-----------------------------------------GAAATGACCGGAAGGCTTGC-------------------
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