>input_sequence_85412
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----------------------------------------ATGCCAATAGCACAACTTGCAGAGAGATTACTTTGCCAAC
GCATGGGGGTGATTGATGAAGGGGAGATGGTCACAGAAGCTGCCATTGCGAAGTTTGCTGATCTCTTCCAAGGCCAGCTG
CCGGACATCGTTGTGGCTGCGCTTCGGGCCCTTTTCAGGCTGGACTGTGACCTTCCCTCGGCAGTGGAGGACGCCCTTCT
TGCTCATGGAGGAGGCACTCTTCTGGAGCTGCAAGGACAAGGCAGGGGAGAAGATGCGGCGACAACCTGA----------
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>chr5D_1_TraesCS5D01G095500
ACGCATTCCGGTCCACCTGGACCAGATTGAAGACTTCCTCCCTGATGTTGATGGAACGATCCCTCGACGTCCGAACCCGC
ATGCCCCCTTCCACTAGCGGTATGGCGTGGTGGATGGAGAGGCGCGGTCGCGTGACCTCCAGGAGCTTCGTGGCGGCCAC
TACGAGCGCGATCGACGCAACAACGACCGCGACAGAGATGATGGGCATGATGGCCGCGGCAGACGTGACGACCGCAACTC
CTCCTGGCGGGGTTTGTTCCGGAGCCGCTCCAGAGCTCCCCGTCGTGACGAGGACCGAGATGGAGGCTCGCGTGAAGATC
GGCGGCATGGGGATCGCGACTACCACGGCCGCCACGGAGATGGACGGAGACGTGCCTTGCCTGATGCTAGGAAGATTGAC
AAGGCCTTAGTGCAGCTCCTTCTTGGTGGGGCTGTCATCCCTGCCTTAGGTAGAAGGGCTCGGCACCGCGCTGCCGGTCA
TGAGAGGCGCTCGCGCTCTTGCGAGGTGACTCGCTCTGAAGACACTCGTGGGAGGTCGCCGCCTCCCTCCCCCCGCACCA
CCTCCAGGGATGTCATCGAGTTGCAGCCCACCTCGACGGTTCCTGACTGGCTGCGGCGCGTAGCTCCATGTCTGGGATCG
CCGGTCTCCCCAGACGCACCCCCTGGCTGGGCCTCCCCAGCCCATCTTCGGCAGCGCTCCGGCCCCCTGCCTCCCAGTCC
ATGCACACCTCTACATGTTCCCAATCCATGCACACCCCTACATGTTCCAACTGCTGCTACTGCCGATGATCAAATTACAG
CAAGTCCGGCGGCAGGTTCAACCCGGGACCAGGGTGGCTTGTCTAGCACGCCTTTGTTTGTTCCGTGTCCAAGAGCCATT
CTTCAAGCGCCTAGCTCCACCCCTCCAAGACCGCCCGCAGCCAGGAGGAAGACATTGGCTGGCATCACAGGACTGAACCT
CATTCGAACCAGCCCAAGACTGAAAGCAAAAATGAGAGAGATGCCAATAGCACAACTTGCAGAGAGATTACTTTGCCAAC
GCATGGGGGTGATTGATGAAGGGGAGATGGTCACAGAAGCTGCCATTGCGAAGTTTGCTGATCTCTTCCAAGGCCAGCTG
CCGGACATCGTTGTGGCTGCGCTTCGGGCCCTTTTCAGGCTGGACTGTGACCTTCCCTCGGCAGTGGAGGACGCCCTTCT
TGCTCATGGAGGAGGCACTCTTCTGGAGCTGCAAGGACAAGGCAGGGGAGAAGATGCGGCGACAACCTGATGTTGCTGGT
CCGTCCATTCGATGATGTAGTCCATTTCCAATGATTAGTTGCCTTCATTTTATTGTGTTCTTAGCTGATCTACCCAGGCC
TGTTTGTAACTTAGTTCCCCAGCTACCTCTCGCCTTGGCCAGGCCACCCTATGTGTCATCTGCTGTCC------TTGATG
TAACTTCTGTTCGCAATGAATGAAAGCCTTTCCATCT---TAAACTGGAACGTCCGTGGTCTAAATTGCCCGAATCGTCG
TGCGACTATTCATGAGACCATTGCTGCCACTCCCTGCAACCTTGTTTGTCTACAGGAAATGAAGCTGGCTACGATTGATC
AATTCACGACTTCTTTCCTTGGCGGCCAGAGGTTAAAGAGCTTTGCTATGAAGCCTGCTGATGGAACCAAGGGGGGCATC
CTCCTTCTCTGGAATGAAGATCACCTTAAGGTGGATAATATTGCTATTGGCACATTCTGCAT-TCTGC-AAGCATCAAAG
TGATCGGCACCAGCACGGTGTTCAATTTCACTTCTGTATATGGCCCTACTCGAAGCAACCTCAAAGATGCCTTTTTCGAG
GAGCTTGTGAGCCTTAAGCCCCATCAGGGCACGAGATGGCTTGTGACGGGCGACTTCAACCAAATCTACCGTGCCCGAGA
CAAAAACCGCACAAATGTTGATCGCAGTCAACTTGTTCACTTCCGAAATGCCCTCAACTCCTGTGAACTGAAAGAGATCG
ATTTGCAGAACAGAAAGTTCACGTGGAGCAATGAGCAAGAAAACCCGACCTTGAGCAAGCTTGACTCTTTTTTCTGCAAT
GAGGATTGGGACGTGGACTTTGGCTCGCACATACTCCACGCTCTCTCGTCCTCGCTCTCAGACCATTGCCCGCTTCTTCT
AGCTAGTGATGAGGGACCAAAGAGACCCAAATCCTTTCGATTTGAAAATTTCTGGACCAAGATGCCTAATTTCAAGAAGG
TTGTCCAGGATGCATGGAATGAGGAAATGAGTCACTCTGAA
>chr2D_884
CAACG---------------------------------------------------------------------------
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---------CCTAGCTCAACCCCGCCAAGGCCTCCAGTTGCAAGGAGGAAGACTCTCGCGAGAGTCACTGGTCTGCACCT
GATTCGGAGCAACCCACGGCTTCAGGCGGAGAACAGAGACATGCCCATCGCTCTGCTGGCAGAAAGACAGCTTTGCCAGC
GTATGGGTGTGGTGGAAGAAGGCGAGATGGTCACTGAAGCAGCCATCTCCAAATTTGTGGCTCTCTTCCGTGGCCAACTG
TCGGACATTGCTGTTGCTGCTCTACACGCCCTCTTCAGACTCGACTGCGACCTCGCCTCTGCCGTTGAAGACGCGTTGAT
AGACCACAGTGGAGATGCTGGCCCGGAGATTCAAGGCCAGGGCGGGGAGGATGCCACTGCATCTGCCTGAAGCTGCAGTT
CTGCTCTGCTGATGATGTACCCAATTACTTATGTTTAGCTGCCACCGTTATGTTGTTCTGTATGCTGCACTAGTTGTGCC
TGTTTGTAGCTTTGTCCTTCAGCTACCTGATGATGTTACTTTGGCAAGGCTCATGTTCGTGCCCTCCTGTAGCTTTGATG
TAGCAAATGTTAGCAATGAATGGAAGCTTCCCTTCCATCCTAAATTGGAACGTTCGCGGTCTTAGTTGTCCAAATCGTCG
CGCCGCCGTCCACGAGACCATTGCCGCGACCTCGTGCAACATTGTTTGCCTCTAGGAGACCAACTTGGCCGTGGTTGACC
CCTTCCTGGCTGCCTTCCTTGGGGGCCAGAGATTGAAAAGCTATGCTAAAAAGCCCATTGATTGCACAAGGGGAGGCATC
CTTCTACTCTGGAATGAGGACATAATCAAGGTGGACAATATTACCACTGGATCTTTCAGCCTATCTGC-AAACATCACCC
TGATCAATACCACCACTTCTTTCAAGCCGACATCTGTTTATGGTCCTACTCGTAGCAATCTCAAAGATGCTTTCTTTCAA
GAGCTTGTGCGCCTGAAACCTCAACAAGGCACGAGATGGCTGGTGTCGGGTGATTTCAACCAAATTTATCATGCCCGAGA
CAAAAACCGCACAAATGTTGATCGTAGACGCCTCGTGCGCTTCCGAAATGCACTCAACACCTGTGAACTGAAAGAAGTTC
ACCTACAAAATAGGAAATTTACTTGGATCAATGAACATGCCAACCCAACCTTGAGCAAATTGGACA-TTTTTTCTGCAAT
GAGGACTGGGATGTTGCTTTTGGCTCTCATATCCTACATGCCCTTTCATCCTCACTCTCTGATCACTGCCCACTTCTCCT
GGCCTGCGACAAGGGACGAAAGCGACCGAAAACTTTTCGATTTGAAATTTTTTGGATTAAGATGCCAAACTTCAAGAAGA
CGGTCCAAGATGCCTGGAATGAGGA----------------
>chr4B_1627
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-----------------------------------AAGAACTTTGCTGAAAAATCTGTTGATGGCACCAAGGGGGGCATC
CTTCTACTCTGGAATGAACACTATATGAAGGTGGACAACATCCACATTGGCACATTCTGCATCTCCGC-GAACGTCTCTA
TCGTCAATACACCAGTTTCCTTCAAACTCACTTCTGTTTATGGGCCTACTAGAAGTAATCTGAAAGACTCTTTCTTCCAA
GAGCTTGTGAGCATAAAACCTCCTCAGGGCACTAGATGGCTCGTTACAGGAGACTTCAACCAAGTTTATCGTGCCCGAGA
CAAAAACCGTGCAAATGTTGATCGATCTCGACTGGTGCGCTTTCGGAACGCCCTTAACTCCTGTGAGCTAAAAGAAATCC
ATCTACAGAATAGAAAGTTCACTTGGAGCAACGAGCAGACTAACCCGACCTTGAGCAAATTAGACTCTTTTTTCTGCAAT
GAGGATTGGGATCTCGATTTCGGCACACACATTCTCCATGCGCTCTCATCCTCACTCTCGGACCATTGCCCACTCCTCTT
GGCTAGTGACAAGGGACCAAAACGACCAAGATCTTTCCAGTTCGAGAACTTCTGGATTAAAATGCCCAACTTCAAGAAAA
TCGTCCAGGATGCCTGGGCTGAGGAAACCAGCCACTC----
>chr7B_1627
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-----------------------------------AAGAACTTTGCTGAAAAACCTGTTGATGGCACCAAGGGGGGCATC
CTTCTACTCTGGAATGAACACAATATGAAGGTGGACAACATCCACATTGGCACATTTTGCATCTCCGC-GAATGTCTCTA
TCGTCAATACACCAGTTTCCTTCAAACTCACTTCTGTTTATGGGCCTACTAAAAGTAATCTGAAAGACTCTTTCTTCCAA
GAGCTTGTGAGCATAAAACCTCCTCGGGGCACTAGATGGCTCGTTACGGGAGACTTCAACCAAGTTTATCGTGCCCGAGA
CAAAAACCGTGCAAATGTTGATCGATCTCGACTGGTGCGCTTTCGGAACGCCCTTAACTCCTGTGAGCTAAAAGAAATCC
ATCTACAGAATAGAAAGTTCACTTGGAGCAACGAGCAGACTAACCTGACCTTGAGCAAATTAGACTCTTTTTTCTGCAAT
GAGGATTGGGATCTCGATTTCGGCACACACATTCTCCACGCGCTCTCATCCTCACTCTCGGACCATTGCCCACTCCTCTT
GGCTAGTGACAAGGGACCAAAACGACCAAGATCTTTCCAGTTCGAGAACTTCTGGATTAAAATGCCCAACTTCAAGAAAA
TCGTCCAGGACGCCTGGGCTGAGGAAACCAGCCACTC----
>chr1B_1675
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---CTCCTCTGGAATGAAGACTACATGAAGGTGGACAACATCCACATTGGCACATTCTGCAT-TTCCATGAACATCTTTA
TCGTCAATACACCAGTCTCCTTCAAGCTCACTTTTGTTTATGAGCCTACTAGAAGTAATCTGAAAGAATCTTTCTTCCAA
GAGCTTGTGAGCATAAAACCTCCTCGGAGCACTAGATGGCTCGTGACAGGAGACTTCAACCAAGTTTATCGTGCCTGAGA
CAAAAATTGTGCAAATGTTGACCGATCTCGCTTCGTGCGCTTTCGGAATGCCCTTAACTCCTGTGAGCTAAAAGAAATCC
ATCTACAGAACAGAAAGTTCACTTGGGGCAACAAGCAGACTAACCCGACCTTGAGCAAATTAGACTCTTTTTTCTGCAAT
GAGGATTGGGATCTCGATTTTGGCACACACATTCTCCATGCGCTCTCATCCTCACTCTTGGACCATTGCCCACTCCTCTT
GGCTAGTGACAAGGGACCAAAATGACCAAGATCTTTCCGGTTTGAGAACTTCTGGATTAAACTGCCCAACTTCAAGAAAA
TCATCCAGGATGCCTGGGCTGAGGAAACCAGCCACTC----
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS--------S-----S-----S--S--S-SS--S-----------SS-S--SS-SS----S--S---S----
S-----S-S--S----S-S--SS-S--SS-S-SS-----S-----S--S--S-SS--S-----S---SSS--------S-
-S-----S---S-S--S-----S-----------S-----S-----SS-S--S----SS-S--------SS-----S---
S-------S-S---S-----S--S-SS-----S-----S--S-----S-----SS----S--S--S--S-----SS-SS-
S-SS--SS-S----SSS--SSS-S----S-S-----S--S---S---SS--S-SSS-S--SS-SS-----S-S---S-S-
-S-SS-SSSS---------SS-S---S-SS---S----S----SS-S--S-S----SS-S-SS----SS---SSSSS---
--------S---S--S-SS---------SSS-SSS-SS-SSS-S--SSSSSSS---SSSSSS-SSS-S------------
--S-SSS----S----------S----S-SS-SSS-S-------S--------S--S-----S-S---S--S--------
S--SS-SS-S--S-----------S--S--SS-S------S-------S--SS----S-SS--SS----SSS-S----S-
SS---SS-S--S-S--------S--------S--S-------------SS-------S------S---------------
--S--S--------------SS--S-S--------S------S-S--------------------------S-----SSS
-----SSS----S---SSSS-----SS----------S-----S--------------S-----------S--S---S-S
--------------S--S--S--------------------S--------S--------------S--S-----------
------------------------S----S---S--S-S------------------------------------S---S
--S-S-----------------S--------------S-SS-----------------SS-S------------------
-----------S--S--S--------S-----S--------S-----S-----S-----S-----------S-----S--
S--------SS-----------S----S-----S----------------------SS--------S--S---------S
-S-----------S-------------SS--S-----SSSS
>forward_579
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-------------------------------------------------------------------------------A
CCTCCAGGGATGTCATCGA-------------------------------------------------------------
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>reverse_1752
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-----------------------------------------------------------------------GCATCAAAG
TGATCGGCACC---------------------------------------------------------------------
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