>input_sequence_85407
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-------------ATGGAGGTGGAGGTGCCGATGGAATATGGCGTGACGACGACGACGGTGGCGGAGGAGCAGGGGTGGG
AGACGCCGAGGAGGGAGGACTGCCGCATCCCGGCCTTGCCGACGTGCCCGCCGCCGCCGCCAAGGAAGAAGCCCGCGGCG
GAGCTCGGCA---GGGCGGCGCCGCGCCGGGGGCCGCCCAAGGGTGGCTACTTCCAGCCGCCGGACATCGAGTCCCTCTT
CCTGCTCGCGCCGCCGCGCAGGCACGCCGCCTCCACCTGCGCGTAA----------------------------------
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>chr5A_1_TraesCS5A01G482300
GCAGCTGTGTGTGTCAATGCGGCGGCGCCACGTACTCCGCCCGGCCACGCTGGCCCGCGCTTTTGCTGCCCGCGCCACGG
AGCCGCCTCCACGTGGTCGCCGCCCCCGCCACAACTCCTCTGCGTGCGGCGCCGAGCAGAGCAGGACGACCGAGGAGATA
GACACGCCCCCCTCTCTCTCCCTCTCCAGTTCCAGGGCATTCTCCCTTCTCCAAACCGCAGAGATAAAA-----------
-----------------------CAATGCTTGAGGCTCAGTTTGAACCGCCCGGCTCGCCTCGCCTCGCCTCGGATCCAC
TGCGCGACCCAGTTACCTTGTCTAAAATACAGCCAGCCTTCGCATAAAATTATAATGAAAGCGATGTGACCCTTGGCCAT
CTCAAATAGCTGAGCTACTCTAAAGCGTCGAGGCAAAGAACAAAATGAAGCATGTAGTATAAACATATTTTGCTGACAAA
AAAAAAAGAGGAATGATTTGATCGGTGTCTTGGATCCGTACGGCCGGTGTGCAGTGGTT---TTC-AGGGCACGATCACG
ACGCGACGCCAGCCATGATCCATCCCTGGCGGTCGTGTCGCGGGAGCGAGCGAGGCGGCCGCAGAGGATCCGAGGCGAGG
GCG-CTCGCTCTAGACCGTTCCCCCGCTTTCGACCGACGCCGGCTCCCGCGCGTTCGCGACCCCGCGCCACGTACGGCGG
CTCTGCTGGCCTGGC-----TTCCTCACGCGCACCCGCGCTTACCCGTCTCGCCGACAGCGGAGCCCACGTCCACCAGGG
TCCCGCAGTTCATGGCGTGAGTTAGTGT--------ACAATCCCAGAGCCGCGTCGCCACCGCAATGCCGCTGTACTCCA
CCACGCTACGCGCTCGTACCACTATATTAGACACGCAGCCTGGCCGCCGTGGTTGCTCACCTCACTTCATTCACTCTCCC
TGTTCCTTCTTGGTAGCTTGCTCACCGGCCAGCTGCTGCTGCTCAAACC-AAACCCGCTTGGTAGGAGTCTAGGAGAAGA
CAGTCCACGGGGTATGGAGGTGGAGGTGCCGATGGAATATGGCGTGACGACGACGACGGTGGCGGAGGAGCAGGGGTGGG
AGACGCCGAGGAGGGAGGACTGCCGCATCCCGGCCTTGCCGACGTGCCCGCCGCCGCCGCCAAGGAAGAAGCCCGCGGCG
GAGCTCGGCA---GGGCGGCGCCGCGCCGGGGGCCGCCCAAGGGTGGCTACTTCCAGCCGCCGGACATCGAGTCCCTCTT
CCTGCTCGCGCCGCCGCGCAGGCACGCCGCCTCCACCTGCGCGTAAAC-----GATCCTCTGCAGACTGCAGCAACTAGC
TGTCTCCTAG-CCTAGGGAATAGCCACTAGCCAGGGATGTTGGCTGCACGTCTTGTTTTGGTTTCGGAGAGAGGAAGATG
TGCGGGCGCGTCCCTCTTCTGCTTCAGTTCCTGACGCG-AAAATTGTAGCATCAGGAAGAAGCTAGGCTGCTCGTGTGTG
GGTGTCACTGTGTCTGG-CCTGCTGGCCACAGGTAGGTAGCTAGGCAGTCGGGAG-ATTAGGAGTAGGAAAGGTTCGAAG
GTGTAGCCCACTCGTACAAACGTGTGCATGTAC-----CGTGTAAATGTTCTTGCAAGCTGGAAGAAATATGGTTCTTGC
AAAATGTTCCTTCTGGTGCACTGCTAGCTACTTGCCTCTTTGTTCGTCCAACATTTAGGGCATTCGCAGGTCCTTCAAAA
TGAAGGAATAGGAAAAAATGCATGAATAGAATGGCATGTCCCATAGTATCCTACAGGATCTGAAAGAATGTTTGATAGCG
CGAGAAAAACAGAGGAACTTTACAAAGAGGTTTGAGTGGATGGAAATCTTCCTCCAAAATATAGTACAAATGGATCTTAT
GGAAAAATTTCTAAGGATGCCAAACTTACGAATCAAACAAGCATCACATGAAAAATTTCTAAGGATTCAAATCCTTTAAA
AATCCTATGCAATTTCTTTGAATCAAAAGAGCCTTTAGGGCCTCTTTGATTCATAGGATTGCAAAAACACAGGAACAGAA
AAAACGCAGGATTGAAATGGTATGTCCATAGGATCCTAGAAAAAATTCCTAAGAATTCAAATTCTTCAAAAATTCTATGC
AATTCCTTTGAATCAAAGGAGCCCTTAGGGCCTCTTTGATTCATAGGATTGCAAAAACACAGGAATAGGAAACGCAGGAT
TGAAATGGCATGCCCATTGGATCTCTATAGTGAGTTTGTTTGAATGTGTTAAGGGAAAAATAAAGGATTTCTTTCAAAAA
GTTTGAGTGGATGCTAGAAT
>chr5D_1
GCAGCTGTGTGTGTCAATGCGGCGGCGCCACGTACTCTATCGCTCCACGCTGGTCCGCGCTTTTGCTG-CCGCGCCACGG
AGCCGCCTCCACGTGGTCGCCGCCCCCGCCACAACTCCTCTGCGTGGGGCGCCGAGCAGAGCAGGACGACCGAGGAGATA
GACATGCTCCAT---------CTCTCCAGTTCCAGGGTATTCTCCC-------------AGAGATAAATCAATGCTTGAG
GCTTTTTTTTTCGTGAGGGAGGTCAATGCTTGAGGCTGAGTTTGAACCGCCCGGCTCGCCTCG----------GATCCAC
TGCGCGGCCCAGCTGCCTCGTCTAAAATGG-----------------------------AGCGATGTGACCCTTCGCCAA
CGCAAAGAACAAAACGGGGA--------------------------------------ATAAATATATTTCGCGGACAGA
AAAAAA--AGGAATATTTTGATTGGCGTCTTGG-TCCGTACGGTCGGTGTGCAGTGGTTTTCTTC-AGGGCACGATCACG
ACGCGACGCCAGCCGTGATCCATTCCTGGCGGTCGTGTCGCGGGAGCGG----GGCGGCCGCAGAGGATCCGAGGCGGGG
GGGCCTCGCTCTAGACCGTTCCCCCGCTTTCGACCGACGCCGGCTCCCGCGCGTTCGCGACCCCGCGCCACGTACGGCGG
CTCTCCTGGCCTGGCCTCGCTTCCTCACGCGCACCCTCGCTTACCCGTCTCGCCGACAGCGGAGCCCACGTCCACCGGGG
TCCCACAGTTCATGGCGTAAGTCACAAAGTCAGTACACAATCCCAGAGCCGCGTCGCCACCGCAATGCCGCTGTACTCCA
CTACGCTACGCGCTCGTACCGCTATATTAATCCCGCACCCTGGCTGCCGTGGTTGCTCACCTCACTTCATTCACTCTCTT
TGCTTGTTCTTGGTAGCTTGTTCACCGGCCAGCTGCTGCT---CAAACC-AAACCCGCTTGGTACGAGTCTAGGAGAAGA
CAGTCCTCGAGATATGGAGGTGGAGGTGCCGATGGAGTATGGCATGACCGTGACGACGGTGGCGGAGGAGCAGGGGTGGG
AGACGCCGAGGAGGGACGACTGCCGCATCCCGGCGTTGCCGGCGTGCCCGCCGCCGCCGCCGAGGAAGAAGCCCGCGGTG
GAGCTCGGCA---AGGCGGCGCCGCGCCGGGAGCCGCCCAAGGGTGGCTACTTCCAGCCGCCGGACATCGAGTCCCTCTT
CATGCTCGCGCCGCCGCGGAGGCACGCCGCCTCCACCTGCGCGTAAAC-----GATCCTCTGCAGACTACAGCAACTAGG
TGTCTCCTACTCCTAGGGAATAGACACTAGCCAGGGATGTTGGCTGCACATCTTGTTTTGGTTTTGGAGAGAGGAAGATG
TGCGGGCGCGTCCCTCTTCTGCTTCAGTTCCTGACGCG-AAAATGGCAGTACCAAGAAGA----ATGCTGCTTTTGTGTG
TGTGTCCCCCTCCCTGG-CCTGCTGGCCATAGGTAGGTG--TATGTAGTTGGGAG-AGTAGGAGTAGGAAAGGTTCGATA
GTGTAGC-----CGTACAGAAGTGTGCATGTACGTGTTCGTGTAGATGTTCTTGCAA-----------------------
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>chr5B_425
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----------------------------------------------------------ATAAATATATTTCGCAGACAGA
GAAAAA--AGGAATAGTTCGATCGGTGTCTTGGATCCGTACGGCCGGTGTGCAGTGGTTTTCAGGGAGGGCACGATCACG
ACGCAACGCCAGCCATGATCCATCCCTGGCGGTCGTGTCGCGGGAGCGG----GGCGGCCGCAGAGGATCCGAGGCGGGG
GCG-CTCGCTCTAGACCGTTCCCCCGCTTTCGACCGACGCCGGTTCCCGCGCGTTCGCGAGCCCCGGCCACGTACAGCGG
CTCTCCTGGCCTGGC-----TTCCTCACGCGCACCCGCGCTCACCCGTCTCGCCGACAGCGGGGCCCACATACACCGGGG
TCCCGCGGTTCATGGCGTAGGTTAGGAT--------ACAATCCCAGAGCCGCGTCGCCACCGCAATGCCGCTGTACTCCA
CTACACCACGCGCTCGTACCGCTATATTACTCCACCGCCCTGGCCGCCGTGGTTGCTCACCTCACTTCATTCACTCTCTC
TGCTTGTTCTTGGTAGCTTGCTCACCGGCCAGCTGCTGCTGCTCAAACCAAAACCAGCTTGGCAGGAGAAGGTAGATAGT
CCAG----GAGGTATGGAGGTGGAGGTGCCGATGGAGTATGGCGTGAC---GACGACGGTGGGGGAGGAGCAGGGGTGGG
AGACGCCGAGGAGGGAGGGCTGCCGCATCCCGGCGGTGCCGACGTGCCCGCCGCCGCCGCCGAGGAAGAAGCCCGCGGTG
GAGCTCGGCAGGGGGGCGGCGCCGCGCCGGGAGCCGCCCAAGGGTGGGTACTTCCAGCCGCCGGACATCGAGTCCCTCTT
CATGCTCGCGCCGCCGCGGAGGCACACCGCCTCCACCTGCGCGTAAACAAAGTGATCCTCTGCAGACCACAGCAACTAGC
TGTCTCCTAG------GGAATAGCCACTAGCCATGGACGTTGGCTGCACATCTTGTTTTGGTTTTGGAGAG--GAAGATG
TGCCGGCGCGTCCCTCTTCTGCCTCAGTTCCTGACGCGAAAAATGACAGCACCAAGAAGA----ATGCTGCTCGTGTGTG
TGT----CCCTCCCTGGCCCGGCTGGCCATAGGTAGGTG--TAGGTAGTTGGGAGGAGTAGGAGTAGGAAAGGTTCGATA
GTGTAGC-----CGTACAGAAGTGTGCATCTAC-----CGTGTAGATGTTCTTGCAA-----------------------
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>SNPs
-------------------------------------SSS-SSS---------S--------------S-----------
----------------------------------------------S---------------------------------
----S--S--SSSSSSSSSSS----------------S--------SSSSSSSSSSSSS---------S-----------
-------------------------------------S-------------------------SSSSSSSSSS-------
------S-----S-S---S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----S
-S----S-S-SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S------S--S----S-
------SS------SS----------------------------------------------------------------
------------------------------------------------SSSSS------------------------S--
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----S-----------------------------------------------------------------------S---
------------------S------SS-----------------------------------------------------
-S------------------S--------SS-S----S----------------------------------------S-
--S-SS--------------------------------------------------------------------------
------S--S--------------------------S-----------SSS-----------------------------
----------------------------------S--------------------------S----------------S-
-------------------------------S------------------------------------------------
-S----------------S-------------------------------------------------S-----------
-------------------------------------------------S--------------S---------------
--------------------------------------------S-S----S--S-----SSSS-S--------------
S-----S-SS-SS----------------S--------SSS----S---S-------S--------------------SS
-------SSSSS------S-S-----------------------S------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_219
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---------------------------------------TTCTCCCTTCTCCAAACCGC---------------------
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>reverse_1837
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----------------------------------------------------------------------------AGCG
CGAGAAAAACAGAGGA----------------------------------------------------------------
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