>input_sequence_85402
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--------ATGGAGGTGCACTGCAGCAGCAACATGGAGGAGAACAAGCAGCATAGCTGGAAGAAGATTTCAAGTGCAAAG
CAGTACAAGGACGGCTGGCCGCCGGGCAATGAGACGCCGGAGAAAGGAGTAAGCCAGGGGCGGAGGAGAGAACTGAGGCG
GTCAGCATCGTTGCCGGTGCGGGTGGCGAGCGCGGCGAGGGAGCAGCGGGCGAGGCTCTACATCATGCGTCGCTGCGTCT
CCATCCTCGTCTCCTCCTGCTGGAAGAACTACCCATAA------------------------------------------
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------
>chr4B_1_TraesCS4B01G140600
GTGAGGAAGAGGATGCGGTGGGGGAGAGCGAGACGGTGTGGTGGAGGCAGTGGAGGAGAGCGAGACGATGCCGGTGGGGA
AGAGGAAGACGATGCGACAGCGAGGGGATTTGGGGAAAATGGTAGGGGCGACGCGCCGGGAGGTGGTTTCCCCACTTTAT
ACGATGGAACGTTTCGGCCATGTCTCATGGACACGTGCTACCCCATGACCGCGGTCAGTTGCATGCGCCCACGTATAAGA
ATACCACTGTACGGTCAGCATACGAAATCACTATACGGGTAAACGGTCAAAGGTGGACTCGGCCCAACACGGCCCCACCT
GTCAGAGTTAACGGTCAAAGACATTGACCCGACGGCAACGTCCGTTGTAACCTGTTCTGAGGATTTCGGGTAAGGAAGTG
AAAAAATTGAGCAAAAATTAAAAGCGTGGGGATGAATGAGTACAACTAACAAATCAGGGACACGGAAATAAAAAACCCTT
GATTATATTGTTGGACACGTACTGACAGAAGAGATTCCGGCGAAAAGTGCCTTTTATAAGCAGATGTATATGATGATTGG
GTTGCTAGTGTCAAAAAATATCTTACATTATAGGACGGAGAGAGTACTCGCTAATCTTATGAGCCGCCCTTCTGCAG---
--TAGTAAAATCGACCAAGCAAAGCATATGCATGCACCCATCGATCCATGCAGACCAGTGCGACATTAAATTAACTGTGT
CCTAACATATACTTATAGTACTACACTTGAGATGCTGCATCAGTAATACAGTA----------TAGTTTTAGCAGGCCAA
GAAGGGATGGGTCCCTGGTGATCCTTATTCTGGAGACAGGGCACGGTCATGAGAAGAGATGCTCTCCCCC--CT------
-ATACATGCATAC------------TAAAATTTACACTAACTAATTAGTGGTACTGAGTACTTAGTCATCAATTGGGGAC
TATAAATAGCATCGGTACTAGTCCAGTAGTCCCACGAGTTGATCAGCCATAACCA------------AGGAGGAGGAGGA
GGAGACCAATGGAGGTGCACTGCAGCAGCAACATGGAGGAGAACAAGCAGCATAGCTGGAAGAAGATTTCAAGTGCAAAG
CAGTACAAGGACGGCTGGCCGCCGGGCAATGAGACGCCGGAGAAAGGAGTAAGCCAGGGGCGGAGGAGAGAACTGAGGCG
GTCAGCATCGTTGCCGGTGCGGGTGGCGAGCGCGGCGAGGGAGCAGCGGGCGAGGCTCTACATCATGCGTCGCTGCGTCT
CCATCCTCGTCTCCTCCTGCTGGAAGAACTACCCATAAATTATCTTCTGTTTCTGGGCCTGGCCTCGTAGTCTGTAGTAC
TTCTGTCTCTTTTTTCTGGACTTTCCTTTTGTTTGAGAAATTTTCTGGACTTTCCTTTTCCACT--ACAGATGGCCCTGG
TGACTTCAAAGAGATGGGCCTAGATCTTACCACTTGTAATTCGGCCATCCAGAAAAGTCAGCCCTTTCTATCCTCTTGGG
CCGCCTCGTTCCTTTCTTTTTATTTATTGGGAAATAAATAAAAGTGTATAGAAGCGCAAAGAGGAAATCCGATGTAAAAC
GCCCGCTGGCCTTGCTCCATTGTTGTTACA--------------------------------------------------
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----------------------AGCGAGCTCGTGCGTTTTAACGGGTGAAAA-AATCACACGTCT-CTAACACAATAATT
ATGACTGAAATCCCC-AATAGGTTGAT-ATACATTCCATCTATGTTGCCGCTTATTCTCCTTCCCAGCCTCATCGACAGC
GGCATCAATGCTCACACAATTATAACACATTTGAATGTGGTCAATTCTAAGGTGTCTATCTCC--ACATAAGATGAGAAA
CCTGCTTTCTTTTTCTCATTGGAGGTTCTGCCGAGGCATGCATCTGTGGTTGTAGATAGTTTCTTTCGTCTCCAAACTAA
TTATCTTGAGCTGTTGATTTCAAATACGGATCTACACCGATACGAAATAAAGACGGATCGTGCGCTATTGATTAAACTTG
CACCGTGAGTAGCA-TTTAAAAAATGTTTAACGGGTAA-AA--ATATCATATTTAGATTTTACATATTTTTTTAATCAAT
-TTTTATATATAACATGTGAAAATTGGAGTTAGGGCTTAAGTGATATGAATAT-TTTTTTTAAAGCATTTGAATCTGTCA
AAAAAGTA--TTGTTTTTCAGATGGACTGTGGGTTGATTAGTAATGGACTGTGCTAACCACCAGTCGACTGGTGGTTAGC
AACAGATCCGCACGACCGATCCTTCCGCTCGTCCCGCTGCGTCGTTCCTCCCGCTTCCAATGATTTTTTTTTCCTTCTCT
CAAAAA
>chr4A_481
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GATTAGATTGTTGGACACGTACCGCCAGAAGAGATTCCGGCGAAAAGTGCCTTTTAGGAGCATATGCATATGATGATTGG
GTTGCGGTTGCAAGGCGTTAGTTTCTAGT-------------AGTACTTGCGAATCTTATCAGCCGTCCTTCTGCAGTAC
TGTAGTAAAATCGACCGAGCAAAGCATATGCATGCACCCATCATTCCATGCAGACCAGT-CGACATTAAATTAACTGTGT
CCTAATATATACTTATAG---TACACTTGAGATGCTGCATCAGTAATACAGTACTCTTGAGTATAGTTTTAGCAGGCCAA
GAAGGGATGGGTCCCTGGTGATCCTTATTCTGGAGACAGGGCACGGCCATGAGAAGAGATGCTCTCCCTACTCT------
-ATACATGCATGCTAGTACTCCTAGTAAAATTTACACAAACTAATTAGTGGTACCGAGTACTTGGTCATTAGTTGGGGAC
TATAAATAGCATCGGTACTAGTCCAGTAGTCGCACGAGTTGATCAGCCATAACCAAGAAGGCGGAGGAGGAGGAGGAGGA
GGAGATCAATGGAGGTGCACTGCAGCAGCGACATGGAGGAGAACAAGCAGCACATCTGGAAGAAGATGTCAACTGCAAAG
CAGTACAAGGACGGCCGGCTGCCGGGCAAGGAGACGCCGGAGAAAAGAGGAAGCCAGGGGCGGAGGAGAGAACTGAGGCG
GTCGGCATCTTTGCCCGTGCGGGTGGCGAGCGCGGCGAGGGAGCAGCGGGCGAGGCTCTACATCATGCGTCGCTGCGTCT
CCATGCTCGTCTCCTCATGCTGGAAGAACTACCCATAAATTCTCTTCTGTTTCTGGGCCTGGCCTCGTAATCTGTAGTAC
TTCTGTCTCTTTTTTCTGGACTTTCCTTTT--TTTAGATTTTTTCTGGACTTTCCTTTGCCACTACACAGATGGCCCTGG
TGACTTCAAAGAGATGGGCCTAGATCTTACCACTTGTAATTCGGCCATCCAGAAA-GTCAGCCCTTTCTATCCTCTTGGG
CCGCCTCGTTCCTTTCTTTTTATTTACTGGAAAATAAATAAGAGTGTATAGAAGCGCAAAGAGGAAATCCCATGCAAAAC
GACCGCTGGCCTCACTCCATTGTTGTTACTAGCAAATATCAAATATGCCTGTGTGTTGCAACGGAAGACAAAAAAGATTA
TGTGTAAGCCAAATAAGTATGACTCAGTACCCTTACATAGGAGCGTCCTCAATTTTAACATTGCGGCTCACCATGTTGCC
ACTTATATTTCTTTCCACCCTCGCTGATGATGGTCGTGATGTCCACATGATTAAAATGCATTCGATGTGGTAAATTCCAA
GGCTATGAGCTTGCCACTACACGCCACACATGTCATTATGTTTCGCAAGGGATTGTTTAAAACTTTAAAAAAAATCTCAT
CGGGCACGAACTACTCCCAACGCCTAGACATATAAAGACTTTTGAAAAACTAAACAAATCCCAGATATAAATGACTTTTG
AATTGGTGAACAATTTTTTGAATCGACAAACATTTTTTTATTTTTAGATTATCTCAAAAAAAATCACGAACATTATTTTT
ATTTATGATTTTTTTTTGAAATGCATGAACAACTTATGAAATCATGAAAAAATATTTACTCAATTTTTTTTGAATCTATG
AGGTTTTTTAAAAATTAGCGAACAAATTATAAAATTTTAAAATTTCTGTGAATATTTTCTAATGTTTTATGGACATTTTT
TAGATTTCAGAATATGTTTTGGATACACTGTCATTTGATTTTATTTCTCGACCTTTTTTCCAACTCATGAATATTTTTTA
TAATTTGCGAGCGGTTTTGCAAAACCACTAACATTTTTCGAATCCGCAAAAAAATTATGATTTCCTAAACATTTTTTTAG
TTCACATACATTTTATGATTTCTTGAGCATGTTTTTGAAAACTTGCAACTTTTAAATTTTGGAAATCCAGAATCTATTTA
AAGAAAGAAAACAGAATTAAGAAAAGTAAAGTAAAAACAAAACGAAAAAAAGTTATGGAGTCTACCCCGCACCTGGGCCG
GCCCATGAACACATAAGTGGGGAGGACTTGCGTTAGAAAAGGGATGAAAAACTAATCAAATCCTAGACATAAAAGACTTT
TCAATCAGTGAACTGTTTTTTTGAATCGACAAACTATTTTTATTGAGATTTTCGATTTTCTCAAAAAAATATCATGAACA
TTATTTTTGTTTACGAACATTTTATTAATTGTACAAACAGTTTTTGAAATCATGAACCTTTTTTACTCAACAAAGTTGTT
TTGAATCTATGAGGTTTTCTAAAATTAGGGAACAAATTTTAAAATCTTAAAATTTCTTCAACATTTTCTAAAATTTTATG
GACATTTTTTCAGATTCCCGAATATGTTTTGAATATACGATCATTTGATTTTATTTCCCGACCATTGTTTCCAAATCAAA
GATATTATAATTTGCAAATAGTTTTCCAAAACCACCAACATTTTCGAATCACGAAAATATTATGATTTCCCAATATTTTT
TTGAATTCACATACATTTTATGATTTCTCAATCATGTTTTTGAAAACTCGCAACTTTTAAAAATATGGAAATCCCGAATT
TGTTTAAAGAAGGAAGAAAACAGAATAAGAAAAGAAAAAAAACCAAATGAAAAAAAGTTAGGGAGTCAACCCCGCACATG
GGCCGGCCCATGAACACATAAGTGGGGAGGACTTGCTTTAGAAAGGGATGAAAAACTAACCAAATCCTAGACATAAAATT
CTTTTGAATCGGTGGACAGTCTTTTGAATCGACACTTTTTTTTAAAATTTTTGCATTTTCTCAAAAAAAAAAATCATGAA
CAATATATTTTACGAACATTTTATTAGATGCATGAACAGATTTTGAAATCATGACTATCTTTTTACTCAACAAAGTTGTT
TTGAACCTATGAGGGTTGTTTAAAATAAGGGAACACGTTTTCAATTTTAAAATTTCTGTGAAAATTTTCTAAAATTTTAT
GGAATTTTTTTCAGATTGTTGAATATGTTTTGAATGTACAATCATTTGATTTTATTTCCCGAGCATTGTTTCCTAATCAG
AAATATATTTTATAATTTGCGAATAGTTTTCTAAAACCACCAACATTTTTTCAATCGCGAAAATATTGTGATTTCCCAAA
CCTTTTTTGAATTCACATACATTTTATGATTTCTCAAGCATGTTTTTGAAAATCTCAACTTTTAAAAATTTGGAAATCCC
GAATTTGTTTAAAGAAGGAAGAAACCAAAATAAGAAACAAAAACAAAATGAAAAAAAGTTAGGAGAGTCAGCCGCGCAGA
TGGGCCGGCCCATGAACACATAAGTGGGGAGGACTTGCGTTAGAAAAGGGATGAGAGATCGAACCCTGGTCTCCTGGGTG
AAACAACTAGGCGTTAGCCACTTTGAAAAAAAAACAACGCAGTGCGACGGCGACTTCGAAAAAAAACAGAATCATTTTCT
TCACTTATGGGTGACATAGTGGGTAATTTATGGCAACTTCGGGATTATTTATTATGACATGTGGGAAAGAAGCATTAGCC
ATTTTATTATTAGGTAAAGACTAGCGAGCTCGTGCGTTGCAACGGGTGAAAC-AATCACACGTCT-CTAACACAATAATT
ATGACTAGAATCCCC-AATAGATTGAC-ATACATTCCATTCATGTTGCCGCTTATCCTCCTTCCCACTCTAGTCGACGGT
GGCATCAACGCTCACACAATTATAACACATTTGAATGTGATCAATTATAAGGTGTCTATCTCC--ACATAAGATGAGACA
TCTGCTTTCTTTTTCTCATTGGAGATTTTGCCGAGGCGTGCATCTGTGGTTGTAGATGGTTTCTTTCGTCTCCAAACTGA
TTATGTTGAGATGTTGATTTCAAATACAGATCTACC---GTACGAAACTAAGATGGATCGTGCGCTATTGATTAAACTTG
CACCGTAACTAGCATTTAAAAAAATGTTTAACGTGTAA-AACAACATCATATTTAGATTCTACATATTTTTGTAATCAAT
TTTTTATATATAACATGTGAAAATTGAAGTTAGGGTTTAAGAAATATGA--ATATTTTTTAAAAGCATTTGAATCTGTCA
AAAAAATA--TTATTTTTGAGATGAACTATGGGTTGATTACTAA------------------------------------
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>chr4D_481
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GATTATATTGTTGGACACGTACCGCCAGAAGAGATTCCGGCGAAAAGTGCCTTTTAGGAGCATATGCATATGATGATTGG
ATTGCGGTTGCAAGGCGTTAGTTTCTAGT-------------AGTACTTGCGAATCTTATCAGCCGTCCTTCTGCAG---
--TAGTAAAATCGACCAAGCAAAGCATATGCATGCACCCATCGATCCATGCAGACCAGT-CGACATTAAATTAACTGTGT
CCTAATATATACTTATAG---TACACTTGAGATGCTGCATCAGTAATAC----------AGTATAGTTTTAGCAGGCCAA
GAAGGGATGGGTCCCTGGTGATCCTTATTCTGGAGACAGGGCACGGTCATGAGAAGAGATGCTCTCCCTACCTGTAGTCC
CATACACGCATAC------------TAAAATTTACACAAACTAATTAGTGGTACCGAGTACTTGGTCATTAGTTGGCGAC
TATAAATAGCATCGGTACTAGTCCAGTAGTCCCACGAGTTGATCAGCCATAACCAAGAAGG------AGGAGGAGGAGGA
GGAGATCAATGGAGGTGCACTGCAGCAGCAACATGGAGGAGAACAAGCAGCATAGCTGGAAAAAGATGTCAACTGCAAAG
CAGTACAAGGACGGCCGGCCGCCGGGCAAAGAGACGCCGGAGAAAGGAGGAAGCCAGGGGCGGAGGAGAGAACTGAGGCG
GTCGGCCTCGTTGCCGGTGCGGGTGGCGAGCGCGGCGAGGGAGCAGCGGGCGAGGCTCTACATCATGCGTCGCTGCGTCT
CCATCCTCGTCTCCTCCTGCTGGAAGAACTACCCATAAATTATCTTCTGTTTCTGGGCCTGGCCTCGTAGTCTGTAGTAC
TTCTGTCTCTTTTTTCTGGACTTTCCTTTT-----------------------------CCACT--ACATATGGCCCTGG
TGACTTCAAAGAGATGGGCCTAGATCTTACCACTTGTAATTCGGCCATCCAGAAA-GTCAGCCCTTTCTA-------GGG
CTGCCTCGTTCCTTTTTTT--ATTTATTGGG--------AAAAGTGTATAGAAGCGCAAAGAGGAAATTCAATGTAAAAC
GACCGCTGGCCTCGCTCCATTGTTGTT-----------------------------------------------------
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-------------------ACTAGCGAGCTCGTGCGTTGGAACGGGTGAAAAAAATCACACGTCT-CTAACATAATAATT
ATGACTGAAATCCCC-AATAGATTAGC-ATACATTACATCTATGTTGCCGCTTATCCTCCTTTCCACCCTCGTCGACGGC
GGCATCAGTGCTCACACAATTATAACACATTTGAATGTGGTCCATTCTAAGGTGTCTATCTCC--ACATAAGATGAGAAA
TCTGCTTTCTTTTTCACATTGGAGGTTCTGCCGAGGCATGCATCTGTGGTTGTAGATGGTTTCTTTCGTCTCCAAACTGA
TTATGTTGAGGTGTTGATTTCAAATACGGATCTACACCAGTACGAAACAAAGACGGATCGTGCGCTATTGATTAAAT---
---CGTAAGTAGCATCTAAAAAAATGTTTAACTGGTAAAAACAACATCATATTTAGATTCTACATATTTTTCTAATCAAC
-TTTTATATATAACATGTGAAAATTGAAGTTAGGGCTTAAGAGATATGA--AT-TTTTTTTAAAGCATTTGAATTTGTCA
AAAAAGTA--TTATTTTTCAGATGGACTGTGGGTTGATTACTAAT-----------------------------------
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>chr1A_1584
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-------------------------GAGCCCGTGCGTTGCAACGGTTTAAAAAACT-ACACGTCC-CTAACACAATAACC
ATGACTGAAGACTCC-AATAGATCCATGGTGCATCCCATCTGTGTTGCCACTTATCCTTCTTTCTTCCCTTGTCAACGGT
GACCGCTGTACTCACACAATCATAACACATTTGAATGTGGTCAATTCTAAGGTGTCTGTCTCTCCGCATAAGATGAGGAA
TCTATTTTTT-TTCC----TGGAAGGTTTGCCAAGGCGTGCATGCATGGTAATAGATGATTTCTTTCGCCTCCAAACTTA
TTTTGCCGAGGTTTTGATTTCCAATCCGGATATATGCCGGTATGAAGGAAAGCTGGATCGTGCACTGTTGATTAAAATTG
CATCCTAAATATCA-TTAAATAAATATTTAACAGGTAA-AACGACATCATATTCAGATTCTACATATTTTTCTAGTCAAT
-TTTTATATATAACGTGCAAAATTAGAGTTAGGTTTAAAAGATATATGG--ATATTTTTAAAATTCATTTGAATCT----
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>chr3A_1584
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-------------------------GAGCCCGTGCGTTGCAAGGAA--AAAAAACT-ACACTTCC-CTAACACAATAACC
ATGGCTGAAGACTCC-AATAGATCCACGGTGCATCCCATCTGTGTTGCCACTTATCCTTCTTTCTTCCCTTGTCAACGGT
GACCGCTGTGCTCACACAATCATAACACATTTGAATGTGGTCAATTCTAAGGTGTCTGTCTCTCTGCATAAGATGAGGAA
TCTATTTTTTTTTCC----TGGAAGGTTTGCCAAGGCGTGCATGCATGGTAATAGATGATTTCTTTCGCCTCCAAATTTA
TTTTGCCGAGGTTTTGATTTCCAATCCGGATATATGCCGGTATGAAGGAAAGATGGATCGTGCACTGTTGATTAAAATTG
CATCCTAAATATCA-TTAAATAAATATTTAACAGGTAA-AACGACATCATATTCAGATTCTACATATTTTTCTAGTCAAT
-TTTTATATATAACGTGCAAAATTAGAGTTAGGTTTAAAAGATATATGG--ATATTTTTAAAAATCATTTGAATCTACCC
AAAAATAGT-----------------------------------------------------------------------
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>chr2D_1607
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------------------------------------------------AAAA-AATACCACGCACACTAACCCAATAATC
ATGACTCAAGACCCCCAATAGATCCAC-GTGTATCTCATCTGTGTTGCCACTTACCCCGCTTTCCAACCTCGGTGACGGT
GACCCTAGTGCTCACACAATCACAACCTGTTTGAATGTGGTCAATTCTAAGGTGTCTCTCTCT--GCATAAGATGAGAAA
TATTCTTCTC-TTTCCCGCGAGG--TTTTGCCGAGGCGTTCATGCGTGGATATAGATGGTTTCTTTCGTTTCTC------
-TTTGTTGAGGTGTTGATTTTCAATCCGGTTCTGCACATATATGAAAGAAAAAAGAATCATGCGCTATTGATTAAG-TTG
CACCTCAGATAGTA-TTTTGAAAATGTTTAACTCATAT-AAAAATATTATATTCAGATTCTACACATTTTTCTAATCAAC
-CTTTATACATAACATATCAAAATTAGAGTTATGGTTTAAAAGATATGG--GTATTTTAAAAATGCATTTGAATCTACCA
AAAAATATCGTTATTTTCTAGATGGATTGCGGGTTTATTA----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
----------------------S-S-------------------------------SS----S---S-------------
-----SSS--SS-SSSSS--SS--SS-S-SSSSSSSSSSSSS------S--S--------S-----S-------------
-----------------------------------------------------------S--------------------
-----S------------SSS-----------------------------------------------------------
--------------------------------------------------------------------SS----------
-------------------------------------S----------------S--------S-----S-S--------
--------------------------------------------------------------------------------
-----S-------------------------------------------------------------S----S-------
---------------S-------------S-------------------S------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------SS--S---SS------------------S---------------------
-------------------------------------------------------S------------------------
----------------------------------------------------------------------S---------
-S----------S----------------S--------------------------------------------------
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--------------------------------------SS----------------------------------------
---------------------S---------------------------------S----------S----S-----S--
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S--------------------------------------------------------S--------------------S-
----S-----S------------------------------------S--------------------------------
------S----------------------------------------------------S-----------S--------
-----------------------------------------S-------SS-----------------------------
------------S---------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_188
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--------ACGTTTCGGCCATGTCTCAT----------------------------------------------------
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>reverse_4690
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-------------------------------------------------TGTGCTAACCACCAGTCGAC-----------
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