>input_sequence_85399
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-------------------------------------------------------ATGTGCGTGTCGTTCGTAGTGGTGG
TGGCGCTGAGCGGGGTGGTGGCGCAGTTGGATTGCAAGCCGCAGTTGCTTAAGGCTTGCGATCCAGCCATCATAGACGGC
AATGCTCCTTCGACATTGTGCTGCTCCATCCTCACAGCGGAGAAGGAGTGCCTCTGCGGATACTTGGAGGATCGTGCGTA
CCGGCAATACGTCCGTGGCCCCAACCTCCGCAAGACAATCACCTCCTGCGGAATACATGTTGGTGTGTGTGCAATTGGAG
TATAG---------------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G424000
ATACCTACTGCTCCGGCAGCACTCTCACCGTAGTCCGCGAGGAAGGCAGCATCAGTGTTCATCTTGGCGACGCTCAACTC
AGGAGGCAGCCATTTGTCTCCAGGCCTAACCCCAGGGAGCTCATCAAAGCTCCCAGTTGTCAAATTTTCCTTACTGCTTG
TCCCCTCATTTATGTGGCACGTGAGATCTCCTTTTTATAGCGACGATGCGATCTCTTCTTTTACCGTAGGTGATTATTCT
GAGTTTTCTTTTTTTGGGGTGAAATCTTGATTCTGAGATTGGTTTTTTATTTATACGAGGGATGTGAGATCTCTTTCTTT
TATCATACGTGATTCTGAGATTTCTTTTTTAATTTGTTAGGGACGTGATATCTCTATTTTATTGTGACATGATTCAAGGA
TGAATTTTTTTTTTACAAAAAATTGGATGGTCGAGATACAATGTTAACTTATTTAGATGGTTATAATAAGATAATTCTAA
TGACGTGCATTAACGTGGAGCCTATATAGAAATAGGATTGCTGTAAATCTCAGGTTACAAAATGGTAAGGTAGTAATGTC
TCCACGCAAGTGGTGCGCTTGGCTTACCTTGCAATCCAGCCATGTTTTTAATGACCCACTTTAATTGAGCGAGCCATTTT
GGTGAGATTAATTGGAACGATGTGATTGCCGTAAATCTTAGTGTAAAAATGGTACGGTATTTATCCAGCCAT--------
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----------------------------GTTTTTAATGACCCGTTTTAATTGAGCGAGCGATTTTGGT----GAGATTAA
TTGGAACGAT-GGGATTGCCGTAAATCTTAGTGTAAA-----------------------AATGGCTGCG----------
-------------TAGTAATTTCAGGCGTGAAAGACGCCTTGTGACGCGTATGAC-------------CAGAGACGATAT
AC------------------------------------------------------------------------------
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----------------------------------------------------------------TTCCTGAAAACTGCCC
--------GGTCCT------------------------------------------------------------------
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-------------------GCCTATAAATACAAGAGGTGTGCTTGGCTTACCTTGCACCACACAAACTAGAGGACATTGT
GTTTGGAGATAAGTCGTGAACATCGAAGATCATGGCTAGACCGGCGGTGGTGGTGATGTGCGTGTCGTTCGTAGTGGTGG
TGGCGCTGAGCGGGGTGGTGGCGCAGTTGGATTGCAAGCCGCAGTTGCTTAAGGCTTGCGATCCAGCCATCATAGACGGC
AATGCTCCTTCGACATTGTGCTGCTCCATCCTCACAGCGGAGAAGGAGTGCCTCTGCGGATACTTGGAGGATCGTGCGTA
CCGGCAATACGTCCGTGGCCCCAACCTCCGCAAGACAATCACCTCCTGCGGAATACATGTTGGTGTGTGTGCAATTGGAG
TATAGAATAATACTAGTTGGAATTAGTTATTGTACATATCTTTTACAATAATATAAACGGCAATGCATGCCTCTAGCTAG
TTTGTGCTTTTTTAGTTTGTTATTATATCTTTTAACGGCTCTTCCTTCCAATTTTTTGTCCGTTCGTGCGTTTAAATTTT
CGTCCGTTCATACTACGTTGTTATCAGATTTCGAAGGTGATAGTAATCTATACCTAATATTAAAGAAAAGAATCTTTCTT
AATTCTTCATCCATCATCTATTTATATCTGTTAATTTTGTGTTACAGATTGGCTAAATCACATATAGATGAAATTTAGCT
ATGTCACATCTAAGTTCACAGCCTTGGGAACAATTTGCCAAGATTTGTGCAATTGATGTAATCCTTGTCCATCCTGAGCG
CACGTCAATGTGCTTTT-TTTTCTGAGTGGAACGTGTCGGCCTGTTTTTTCTGCGCGTGTACGCCAGTGCTCTTCCACGT
CCGTGTCAAGGCTTTCTAGTGCTTGTACATTTGTGGGCCACTGATTGTTAGTCTGTGGGCCAATAATGCTATGTCTACGA
ATGGACTACGAAGACCTACGTAGCCTTCCAAACAAATCCTCTTGGCCCCCTGGGAGTGGGCCCCAGCTGCTAATTCTGGC
CTAATTAATTTTCTCCACATTAGCTTTTACGTAAAACTCTTACGTTACTTTTCGTAGGTGTAGCATTGTCCGTCTGTGGG
CTGCGTTAGTATGTTTTTTTGCCTTTTTTATCATCTGCATGCACACTGTGTTCAGATCTCTTTTCAAGTGTACGCTCTCA
AATTTGTTTTTTCCTTGAAACTTGTTTCTTGACATTGTTTGTTTTAAGGTTGTTTTTCTTCTCAGAATTTTTTTCAATCT
ATTCGTCAATAATGGCAGTACAGAAACACTAGAGATAATAAAAATTACAACTAGATTCATGGATCACCTAGCGACGGCTA
CAAATGCTAGAGCGAGCTGAAGTCACACTGTCATCATCGCCTCACC
>chr4A_446
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---------------------------------------------AACTTATTTAGATGGTTATAGTAAGATAATTCTAA
TGACGTGTATTAACGTGGAGCCTATATTGAAACAGGATTGCTGTAAATCTCAGGTTAGAAAATGATAACGTAGTAATGGC
TCCACGCAAGTTGTGTGCTTGAATTACCTTGCAATCCAGCCATG------------------------------------
-------------------------------------------------------------------------TTTTTAC
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-----------------------------TTTTTAATGACCCGTTTTAATTGAGCGAGTGATTTTGGT----GAGATTAA
TTGGAACGAT-GGGATTGCCGTAAATCTTAGTGTAAAAATGGTACGGTGTTTAATTAATTAATGGCTGCG----------
-------------TAGTAATTTCAGGCGTGAAAGACGCCTTGTGACGCGTATGAC-------------CAGAGACGATAT
AC------------------------------------------------------------------------------
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----------------------------------------------------------------TTCCAGAAAACTGCCC
--------GGTCCT------------------------------------------------------------------
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-------------------GCCTATAAATACAAGAGGTGTGCTTGGCTTACCTTGCACCACACAAACTAGAGGACATTGT
GTTTGGAGATAAGTCGTGAACATCGAAGATCATGGCTAGACCGGCGGTGGTGGTGATGTGCGTGTCGTTCGTAGTGGTGG
TGGCGCTGAGCGGGGTGGTGGCGCAGTTGGATTGCAAGCCGCAGTTGCTTAAGGCTTGCCATCCAGCCATCATAGACGGC
AATGCTCCTTCGACATTGTGCTGCTCCATCCTCACAGCGGAGAAGGAGTGCCTCTGCGGATACTTGGAGGATCGTGCGTA
CCGGCAATACGTCCGTGGCCCCAACCTCCGCAAGACAATCACCTCCTGCGGAATACATGTTGGTGTGTGTGCAATTGGAG
TATAGAATAATACTAGTTGGAATTAGTTATTGTACATATCTTTTACAATAATATAAACGGCAATGCATGCCTCTAGCTAG
TTTGTGCTTTTTTAGTTTGTTATTATATCTTTTAACGGCTCTTCCTTCCAATTTTTTGTCCGTTCGTGCGTTTAAATTTT
CGTCCGTTCATACTACGTTGTTATCAGATTTCGAAGGTGATAGTAATCTATACCTAATATTAAAGAAAAGAATATTTCTT
AATTCTTCCTCCATCATCTATTTATATCTGTTAATTTTGTGTTACAGATTGGCTAAATCACATATAGATGAAATTTAGCT
ATGTCACATCTAAGTTCACAGCCTTGGGAACAATTTGCCGAGATTTGTGCAATTAACGTAATCCTTGTCAATCCTGAGCG
CACGCCAATGTGCTTTTTTTTTCTGAGTGGAACGTGTTGGCCTGTTTTTTCTGCGCGTGTACGCCAGTGCTCTTCCACAT
CCGTGTCAAGGCTTTCTAGTGCTTGTACATTTGTGGGCCACTGATTGTTAGTCTGTGGGCC---------ATGTCTACGA
ATGGACTACGAAGACCTACGTAACCTTCCAAACAAATCCTCTTGGCCCCCTGGGGGTGGGCCCCAGCTGCTAATTCTGGC
CTAATTAATTTTCTCCACATTAGCTTTTACGTAAAACTCTTACGTTACTTTTCGTAGGTGTAGCATTGTCCGTCTGTGGT
CTGCGTTAGTATGTTTTTTTGCCTTTTTTATCATCTTCATGCACACTGTGTTCAGATCTCTTTTCAAGTGTACGCTCTCA
AATTTGTTTTTTCCTTGAAACTTGTTTCTTGACATTGTTCGTTTTAAGGTTGTTTTTCTTCTCAGAATTTTTTTCAATCT
ATTCGTCAATAATGACAGTACAGAAACACTAGAGATAATAAAAATTACAACCAGATTCATGGATCACCTAGCGACGGCTA
CAAATGCTAGAGCGAGCTGAAGTCACACTGTCATCATCGCCTCACC
>chr4A_446
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---------------------------------------------AACTTATTTAGATGGTTATAGTAAGATAATTCTAA
TGACGTGTATTAACGTGGAGCCTATATTGAAACAGGATTGCTGTAAATCTCAGGTTAGAAAATGATAACGTAGTAATGGC
TCCACGCAAGCTGTGTGCTTGAATTACCTTGCAATCCAGCCATG------------------------------------
-------------------------------------------------------------------------TTTTTAC
TTTTTAATGACCCGCTTTAATTGAGCGAGCCATTTTGGTGAGATTAATTGGAACGATGTGATTGCCGTAAATCTTAGTGT
AAAAATGGTACGGCATTTATCCGGCCATGTTTTTAATGACCCGTTTTAATTGAGCGAGTGATTTTGGT----GAGATTAA
TTGGAACGAT-GGGATTGCCGTAAATCTTAGTGTAAA-----------------------AATGGCTGCG----------
-------------TAGTAATTTCAGGCGTGAAAGACGCCTTGTGACGCGTATGAC-------------CAGAGACGATAT
AC------------------------------------------------------------------------------
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----------------------------------------------------------------TTCCTGAAAACTGCCC
--------GGTCCT------------------------------------------------------------------
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-------------------GCCTATAAATACAAGAGGTGTGCTTGGCTTACCTTGCACCACACAAACTAGAGGACATTGT
GTTTGGAGATAAGTCGTGAACATCGAAGATCATGGCTAGACCGGCGGTGGTGGTGATGTGCGTGTCGTTCGTAGTGGTGG
TGGCGCTGAGCGGGGTGGTGGCGCAGTTGGATTGCAAGCCGCAGTTGCTTAAGGCTTGCGATCCAGCCATCATAGACGGC
AATGCTCCTTCGACATTGTGCTGCTCCATCCTCACAGCGGAGAAGGAGTGCCTCTGCGGATACTTGGAGGATCGTGCGTA
CCGGCAATACGTCCGTGGCCCCAACCTCCGCAAGACAATCACCTCCTGCGGAATACATGTTGGTGTGTGTGCAATTGGAG
TATAGAATAATACTAGTTGGAATTAGTTATTGTACATATCTTTTACAATAATATAAACGGCAATGCTTGCCTCTAGCTAG
TTTGTGCTTTTTTAGTTTGTTATTATATCTTTTAACGGCTCTTCCTTCCAATTTTTTGTCCGTTCGTGCGTTTAAATTTT
CGTCCGTTCATACTACGTTGTTATCAGATTTCGAAGGTGATAGTAATCTATACCTAATATTAAAGGAAAGAATCTTTCTT
AATTCTTCATCCATCATCTATTTATATCTGTTAATTTTGTGTTACAGATTGGCTAAATCACATATAGATGAAATTTAGCT
ATGTCACATCTAAGTTCACAGCCTTGGGAACAATTTGCCGAGATTTGTGCAATTAACGTAATCCTTGTCCATCCTGAGCG
CATGTCAATGTGCTTTT-TTTTCTGAGTGGAACGTGTCGGCCTGTTTTTTCTGCGCGTGTACGCCAGTGCTCTTCCACGT
CCGTGTCAAGGCTTTCTAGTGCTTGTACATTTGTGGGCCACTGATTGTTAGTCTGTGGGCC---------ATGTCTACGA
ATGGACTACGAAGACCTAGGTAACCTTCCAAACAAATCCTCTTGCCCCCCTGGGGGTGGGCCCCAGCTGCTAATTCTGGC
CTAATTAATTTTCTCCACATTAGCTTTTACGTAAAACTCTTACGTTACTTTTCGTAGGTGTAGCATTGTCCGTCTGTGGT
CTGCGTTAGTATGTTTTTTTGCCTTTTTTATCATCTGCATGCACATTGTGTTCAGATCTCTTTTCAAGTGTACGCTCTCA
AATTTGTTTTTTCCTTGAAACTTGTTTCTTGACATTGTTTGTTTTGAGGTTGTTTTTCTTCTCAGAATTTTGTTCAATCT
ATTCGTCAATAATGGCAGTACAGAAACACTAGGGATAATAAAAATTACAACCAGATTCATGGATCACCTAGCGACGGCTA
CAAATGCTAGAGCGAGCTGAAGTCACACTGTCATCATCGCCTCACC
>chr4A_475
TTCTCATGG-----------------------------------------------------------------------
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----GTGCATTAACGTGGAGCCTATATAGAAATAGGATTGCTGTAAATCTCAGGTTACAAAATGGTAAGGTAGTAATGGC
TCCACGCAAGTGGTGCGCTTGGCTTACCTTGCAATCCAGCCATG------------------------------------
-------------------------------------------------------------------------TTTTTA-
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-----------------------------------ATGACCCGTTTTAATTGAGCGAGCGATTTTGGT----GAGATTAA
TTGGAACGAT-GGGATTGCCGTAAAACTTAGTGTAAA-----------------------AATGGTACGGTATTTAATTA
ATTAATGGCTGTATAGTAATTTCAGGCGTGAAAGACGCCTTGTAACGCGTATGACCAAAGCCTTGATTCAGAGACGATAT
AC------------------------------------------------------------------------------
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----------------------------------------------------------------TTCCTGAAAACTGCCC
CGCCCTGCGGTCCT------------------------------------------------------------------
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-------------------GCCTATAAATACAACAGGTGTGCTTGGCTTACCTTGAACCACACAAAATAGAGGACATTGT
GTTTGGAGATAAGTCGCGGACATCGAAGATCATGGCTAGACCAGCGGTGGTGGTGATATGTGTGTCGTTCCTAGTGGTGG
TGGCGCTGAGTGGGGTAGTGGCGCAGTTGGATTGCAAGCCGCAGTTGCTTAAGGCTTGCGATCAAGCCATCAGAGACGGT
AGTGCTCCGTCGACATTGTGCTGCTCCAACCTGACGGCGGAGAAGCTGTGCCTCTGCGACTACTTGGAGGATCGTATGTA
CCGGCCCTACGTCCGTGGCCCCTACCTCGACAAGACAATCGCCTCCTGCGACATAAATCGTGGGGTGTGTCCAATTGGAG
TATAAAATAAT------TGGAATTAG-TATTGTACATCTCTTTTACAATAATATAAACGGCAACGCATGCCTTTGGGT--
----TGCTTTTTTACTTTGTTAC-----CTTTTAACCCTTCTTCCTTACAAATTTTTGTCCGTTAGTGCGTTTAAATTTT
CGTCCGTCCATAA------GTTACCAGATTTCGAAGGTG-----------------------------------------
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>chr2D_703
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--------------------------------------------------------------ATCCAGCCATCTTTTTA-
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-----------------------------------ATGACCCATTTTAATTGAGCGAGCGATTTTGGCGATCGAGATGAA
TTGGATCGATCGGGATTGCCGTAAATCTCAGGGTAAA-----------------------AATGGCAGGT----------
ATTAATGGCTGCATAGTAATTTCAGGCGTGAAAGACGCCTTGTGACGCGTATGCCGACCACTGCGTCGGGGAGCTTCCGC
CATGGCCGCCGCGCTGCATCAAAGCACCATCGCCGGCAACGCTGCATCGGTCATGGCCGTGGGCGCTGCATCTCAGCTTT
CGCCGTCGTCGCCACGCGCTACGTCACAACACCCGTCACCGCCAATGGAGCTTTGCCGGGGGGCACCGGTGCTGCAATGG
AGCTTCGCCGATGGCCGCCGGGGTTGCGTTGGAGCACCGTGTGCCGGTGTTGCGGCTGCAATGAAGCAGGGGTCGGAGCA
GCGACGGGCCGCCGGCGCTGCGTTGGAGCACCATGTGCCGGTGTTGGCGCTGCAATGGCACATGGCCGGAGTTGCTACGG
GTCGCAGGAGCTGCGTTGGAGCACCCCCGCGCCGGTTTTGGCGCTGCAATGGCGCATGGCCGGAGTTGCTACGGGTCGCC
GGAGCTGCGTTGGAGCACCATCGCGCCGGTTTTGGCGCTGCAATGGCGCATCACCGTGCCGCCGTTGCTGCTGAACACCC
AGCTCCGCCGACCGCCGTTGAGGGGGGTGCGGCTCCTGCTTGCGAAGTGAGGGGGGTGCGGCTCCTGCTTGCGAAGCCGT
GCGGAGCTCTGCTTCCGCAGTGACTCTTGTTGTTTCTTCGCTACGAATCCAACGGCTGCCAGGGAAAGATCAAACGGCCG
TACAGGCGGACGTAGCAGCGCCCATATATACAAGTGGTGTGCTTGGCTTACCTTGCACCACACCAACTTGAGGACACTGT
GTTT--AGATAAGTCGCAGACATCCAAGATCATGGCTAGACCGGCAGCGGTGATTATGTGCGCGGTATTCATAGTGGTGG
TGCCGCTGAGCGCGGTGGTGGCGGAGTTGGAGTGCAGACCGCAGTTGCTCCTGGCTTGCGATCCAGCCATCAGAGACGGC
AAGGCTCCTACGACATTGTGCTGCTCGAACCTCCGAGCGGAGGAGGTGTGCATCTGCAAGTACCGGCAGGATCCGATGTA
CCGGCGCTACATCCCTGGCCCCTACTTCCCAGAGATAACCACCTCATGCGGCATACATCTTGAGTGTCTATTTAT-----
---------ATAATACTAGGAATGTGTTATTGTACATCTCTTTTACAATAATA--AATGGTAATGCATGCCT--------
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>SNPs
S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S--------------
------------------------------------------------------------------------------S-
--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
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---------------------------------------S--------------S-S-----------------------
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-------------------------------------------------------------SSSSSSSSS----------
----------------------S-------------------------------S-------------------------
-------------------------------------------------------------------------------S
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---------------------------------------------------S----------------------------
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>forward_100
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AGGAGGCAGCCATTTGTCTC------------------------------------------------------------
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>reverse_2457
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--------------------------------------------------------TGTAATCCTTGTCCATCCTGAGC-
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