>input_sequence_85398
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------ATGGGGTACAAGG
CGTACGTGTACCGGGTGCTGAAGCAGGTGCACCCGGACCTGGGGGCGTCGGGGAAGACGATGCAGGCGCTGGACATGATG
ATGGCGGACATGTTCGAGCGGCTGGCCACGGAGGCGTCGCGGCTGGCGCAGTACGCCGGGCGCGCCACGCTCACGTCCCG
CGACGTGCAGAACGCGGTGCGGCTGGTGCTCCCCGGCGAGCTCACCAAGCACGCCATCTCCGAGGGCACCAAGGCCGTCA
CCATGTACACGTCCT---GA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr4A_1_TraesCS4A01G311600
TTTTGTATTTTATTAAAAAGCGTGATTTATATGTACATTATGTGCAAATTTTGTCTTTTTTTTCATTTTCTTTCTTTCCA
AAGGGTAATAGTAATGCCACAAATTTATTTGTTCTTAGAAAATTTATTATTTTGTTTTAGTTTTATTTATTTTTAGTCTT
TAAGGGAATACCAATGCAACTGTGATTCATTCCTTGTTATGAAACCTACACGTAATTAGGCTCCATTAGATCGATCGATT
AAACTTGCATGTAATTAGGTTCCATTGGATCGATCGATTAAAATTTACACGTAATTAGGTTGTCCAGTCGAATGAAAAAC
AATTCAGACAGCCAGAATTTGAATTGCTGTCGCGCGTTCCAACC--AAGGAAGGAAGGTGCAAGCTTGTTCCAGAAAGAG
GCCACCGTGCATGCCATGCAAACGCAAACGCAAACGCAATGCAGCT-------CGGTCACACACAGAGCCCAAGACGGTG
G-----------------------------------------ACAGTTTCTTACCGCCTCCTTCCCTCCGCGTGTTACCA
CGTCGCCGGCCGGTCTCACCTCTGCCGCTGCCGCGTGTCCGGCCACCCTACACGTGCCCCTCCCACCTTCCTCCATAAGT
ACGCCAGCTGCCG----------AGCTCACTTCGTCCAACACACTTGTGCAACCCACTTCACCTCACGCTCAGTCCCAGT
ACACTCCACAGTCCACACTAGCAAAGCAGTAGCAAGAGTAGCGAG-ATGGCTCCCAAGCGCCGCGGCAGCAAGGTGGTCA
GCTCCGTCGTCAAGACCAAGGTGGTGGGGGAGACCGTGGAGGTCGCCACCACCATCCTCCCCGCCTCCCAGGACGACCC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GCAGCCGGAGGAGGACGACGGCGAGCCGAC---CAAGCCGGAGGGCCCCG
AGACGCCGACGCAGAAGAGGGCGAGGAGCGAGGGCAAGGCCAGGACGCGCAAGGCGGAGGCGGCGGCGAGGAAGAACAT-
-----------GGGAAAAGGAAGAGGCGGGCGGCGTCGTCGTCGGCTTGGGAGGGAACAACATCGACATGGGGTACAAGG
CGTACGTGTACCGGGTGCTGAAGCAGGTGCACCCGGACCTGGGGGCGTCGGGGAAGACGATGCAGGCGCTGGACATGATG
ATGGCGGACATGTTCGAGCGGCTGGCCACGGAGGCGTCGCGGCTGGCGCAGTACGCCGGGCGCGCCACGCTCACGTCCCG
CGACGTGCAGAACGCGGTGCGGCTGGTGCTCCCCGGCGAGCTCACCAAGCACGCCATCTCCGAGGGCACCAAGGCCGTCA
CCATGTACACGTCCT---GAAGTGTACATGTTAACAAGTGAAGATCCCTCCGTAAGAAGCAGGGCAGCAGGGTGCATGCT
AGTACTCCTACTAGTAGTTGGTTCAGTTTAGTTGTGTTTCCGATGGCATGATTGCATGTATGGTTCAGTCTGGACTTACT
TTTGGAA--AGTAGTTTTAAGTTGGTGGCAGATGATGTACCTAGTGTAGTTAGTTGGTCAATTAGTTGCTGTTGATGTA-
------GTAGTGGCGCTAGCGCTAATATAATGGTGCCTCCCTGCTTAAATTAGTACTAGCCAGTAGTATATTTCTGTTGG
TCAT----TGTGTGCATGCTTCAGTTGGTG--------------------------------------------------
--TACATTTTTCGATCTAATGGG-------TGTATGCATGTTGTGTGT--TGTAGCAAATGAGAGAGTCCGTAATTAGTT
ATGTGAGTGGGGGGCTAACCACACATGACAGGAACTTGCTAGACACGTGAACAAACATATAAAGCCATGCATGCAGAGAA
CAAACATATAAAGCCATGCATGCAGAGACTATATATATGTCATGCATTAGTAGAAAAAGGGTGAATCACATTAGTGCCGG
TTCGAATTTGAACCGGCACTAATGGGGTTCCAACGACTAGGGCGGGCATCATTAGTACCGGTTCATGAATAACCTTTAGT
ACCGGTTCATGGCTGTCACGAACCGGTACTAGAATTTCTTTGTAAGCTGATTTTTAATCCCACCTCGCCAAGAGAGATGC
AGTATGAGCGGTTTATAAGCCGTGAGTGCACAGACAATGATGAAGAGTTGCAATGCTCACCTACATGTTGATTAGCTTCA
AGCCTTGCGGGATAGCATAGATTGCACTGGTCTATGTGTAGTGCAGTCTACACTATTCCGAATGGCTTAAAGCAAATTAA
CCAGCATTGCACCTCTTTTTTATTTTTAATAACTTATTTGAACTCCGGACTTCTTTTGTGTTCAGTATGCAGCATTCAAA
GCGACGTCATCAATTTCCAACATGTTCTGACATCATTTGTTATTTTTCGGTCAT
>chr4B_321
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AATTCAAACAGCCGAAATTTGAATTGCTCTCGCGCGTTCCAACCAAAAGGAAGGAAGCTGCAAGCAAGTTCCAGAAAGAG
GCCACCGTGCATGCCATGCAA-------------TGCAATGGCATTGAGACAGCGGCCACACACGGAGCCCAAGGTGGCG
GAAAACC----GCTCACTGTAGTACCACAGTGAGTGTTCTGGACAGTTTCTTACCG--------CCTCCGCGTGTTACCA
CGTCGCCGGCCTCA----------CCCCTGCCGCGTGTCCGACCACCCTACACGTGCCCCTCCGGCCTCCCTCCATAAGT
ACACCAGCTCCGGCCAGCTGCGAAGCTCACTCCACCCAACACACTTGTGCAAGCCACTTCAC-----TCTCAGTCCA---
-------------CTCACCAGCAGAGCAGTAGT---AGTAGCGAG-ATGGCTCCCAAGCGCCGCGGCAGCAAGGTGGTGA
GCTCCGTGGTGAAGACCAAGGTGGTGGAGGAGACCGTGGAGGTCGCCACCACCATCCTCCCCGCCTCCCAGTCCCAGTCC
CAGCCCGACTCCGCCGCCCAGGAGGAGGACCTGCAGCAGCCGGAGGTCGTCGACGTCTCCCGCTCCCGCGACGTCCACGT
CGAGGTCGTCACCACCCCCGACGCCCAGCCCACCCACGGCGCCAAGAAGCAGCCCGCCTCCAAGAGGGGCGCCGCCAACG
CCAAGCCGCCGGCCGGGCCGC---TGGTGGTGCCGGTCTCGCCGTCACCACAGGAGCAGGAGGCCCAGCCGGCGGAGGAG
CAGCAGCAGCAGCGCAAGAAAGGTGGCGGCAAGACGCCGGCGTCGCTGCAGAGCCAGGAGACGCAGGAGAACCCCTACGC
GTACCAG---GACGAGACCACCAAGAAGAGGCCTGCAGAGGAGGACGACGGCGCTGAGCCTAATAAGCCGGAGGGCCCCG
AGACGCCGACGCAGAAGAGGTCCAGGACCGAGGGCAAGGCCAAGACGCGCAAGGCGGAGGCCGCGGCGAGGAAGAAGCTG
TCCGCGGCGGCGGGCAAAGGAAAAGGCGGGCGCCGCCGTCGTCGTC-TGGGAGGGAACAACGTCGACATGGGGTACAAGG
CGTACGTGTACCGGGTGCTGAAGCAGGTGCACCCGGACCTGGGCGCGTCGGGGAAGACGATGCAGGCGCTGGACATGATG
ATGGCGGACATGTTCGAGCGGCTGGCGACGGAGGCGTCGCGGCTGGCGCAGTACGCCGGGCGGGCCACGCTCACCTCCCG
CGACGTGCAGAACGCGGTGCGCCTGGTGCTCCCCGGCGAGCTCGCCAAGCACGCCATCTCCGAGGGCACCAAGGCCGTCA
CCATGTACATGTCCT---GAAGGCCCAAACATCTCAAAGATCCACCCGTCGGTCAGAAGCAG------AGGGTGCATGCT
GG---------TAGTAGTCAGTTCGGTTTAGTTGTGTTTCCGTGGC-------------ATGGTTCGGTCTGGACTTTTG
CAATGCGGTAGTAGTTTTAAGTTGGTGGCTGATCGATGATGTAGTCTAGTTAGTTGGTTAATTACTAGTTACTGTTGAAT
GTTGATGTAGTGGCGCTAGCGCTTAAGGTTCAACTTAAACTGTTGGTCAT---------------GTATATTTCTGTTGG
TCATGTATTGTGTGCATGGTTCAGTTGGTGCTAGATGAGATGACCACCGAGTAAATTAGTTGCAAGTTCAATTAAGCAGG
TTTACATTTTTCGATCTAATGGTTTATGGTTGTATGCATGTTGTGTGTGTTGTAGCAAATT---GAGTCCGTAATTTGTT
ATGTGAGTGGCTGGCTACCGACG-----CAGGAACTTGCTAGACACGTGAACAAACATAT--AGCCATGCATGCACAGA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr4D_386
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GTTCCAGAAAGAG
GCCACCGTGCATGCCATGCAA-------------CGCAATGCAGCTGGG--AGCGGCCACACACAGAGCCCAAGGTGGTG
GAAAACCCTATGCTCACTGTACTCTAGTA-------------ACAGTTTCTTACCGCC----TCCCTCCGCGTGTTACCA
CGTCGCCGGTCTCATG----------CCTGCCGCGTGTCCGACCACCCTACACGTGCCCCTCCCGCCTTCCTCCATAAGT
ACACGAGCTGCCA----------GGCTCACTTCGTCCAACACACTTGTGCAACCCACTTCACCTCACTCTCAGTCCCAGT
ACACTCCACAGTCCACACTAGCAAAGCGGTAGG---AAGAGTAGCCATGGCTCCGAAGCGCCGCGGCAGCAAGGTGGTGA
GCTCCGTCGTCAAGACCAAGGTGGTGGAGGAGACCGTGGAGGTCGCCACCACCATCCTCCCCGCCTCCCAG------TCC
CAGCCCGACTCCGCCGACCT---------------GCAGCCGGAGGTCGTCGACGTCTCCCGCTCCCGCGACGTGCACGT
CGAGGTCGTCACCACCCCGGATGCCCAGCCCACCGCCGGCGCCAAGAAGCAGCCCGCCTCCAAGAGGGGCGCCGCCAACG
CCAAGTCGCCGGCCGCGCCGCTGGTGGTGGTGCCGGTCTCGCCGGAAGAGG-----------------------------
----AGCAGCAGCGCAAGAAAGGCGGCAGCAAGACGCCGGCGTCGCTGCAGAGCCAGGAGACGCAGGAGGAGCCCTACGC
GTACCAGGGCGACGAGACCACCAAGAAGAGGCCGCAGGAGGAGCAGGACGGCGCTGAGCCTAACAAGCCGGAGGGCCCCG
AGACGCCGACGCAGAAGAGGTCCAGGGGCGAGGGCAAGGCCAAGACGCGCAAGGCGGAGGCCGCAGCAAGGAAGAAGCTG
TCCGCGGCGGCGGGGAAG---AAGGGCGGGCGGCGTCGGCGTCGGC-TGGGAGGGAACACGGTGGACATGGGGTACAAGG
CGTACGTGTACCGGGTGCTGAAGCAGGTGCACCCGGACCTGGGCGCGTCGGGGAAGACGATGCAGGCGCTGGACATGATG
ATGGCGGACATGTTCGAGCGGCTGGCCACGGAGGCGTCGCGGCTGACGCAGTACGCGGGGCGCGCCACGCTCACCTCCCG
CGACGTGCAGAACGCGGTGCGCCTGGTGCTCCCCGGCGAGCTCGCCAAGCACGCCATCTCCGAGGGCACCAAGGCCGTCA
CCATGTACACGTCCTCCTGAAGTGTACATG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
------S------SS-------------S----------------------------S-------SS-------------
---------------------SSSSSSSSSSSSS----------------------S-----------------SS----
----------------------------------------------------------SSSS------------------
-----------SSSSSSSSSSSSS--S--------------S----------------------S---------------
--S----------------------------------------------------------------S------------
--------------------------------SSSS------------------------------------------S-
---------------------------S-------------------------------------------SS-S-SS--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S--------------------SSSS-S---------------------
--------------------S-S-------------------S------------------S--------------SS--
--------------S-------S-----------------------S--------------S------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------S-----
---------------------S---------------------S------------------------------------
------------------------------S-SS---SSSSSS-S--S--S--S--------SSSSSS------------
S-SSSSSSSSS-------SS----S-----------------SS-SSSSSSSSSSSSSS-------S----------SSS
SSSS-SS----------------------S---SSSSS-SS----S------------S-----S-S-S-SS--S--S--
-----------------------S-SSSSSSSSSSSSSS-SSSSSSSS--SSSSSSSSSSSSSSS---------------
------------------S-------------------------------------------------------------
----------------------S-------------------------------------SSSS------------S---
----------SS-----S-S--SSSSSS--------------------------------SS-------------S---S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_475
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GTCACACACAGAGCCCAAGA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>reverse_2251
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AAGCCATGCATGCAGAGACT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
