>input_sequence_85383
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-----------------------------------------------------------------------ATGCAGCGT
CTCAGAGCTGCACTTCATGTCGAGACCTATTCGGTGAAATCTTGGTGGGATGCGGTTCTTTCTGATAATACACTCCCGAC
GAAGGCCCTATCTTCTCTGTTACTTCTTGTGGGATGGCAGATATGGAATGAAAGGAATGCTCGTGTATTCAGGAGCAAAG
TGGCGCCGGTGGCGATTGTCATGCGAGGCATCAAAGAGGAAGTTTCGATTTGGGCCAATGCAGGTGCTAAGCATTTGCGT
AATGTAATGCCGCGAGAGTAA-----------------------------------------------------------
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>chr2D_1_TraesCS2D01G358800
AAGCCTGTCGGTCATTTTGTCCGCTACCACATCTTTCGCTGTGCGCTTTGCTTCGGATGCTCGTCGCCTGCACGGAAACT
GGGGCACGATGCATGCCCTCTGACCCCGGTGATCCGCCCACACCCACACCACA-CCCGGGGAACTGCGCGCCCGTTTTTC
AAATTTTGTCT----TCCTGGGAGGCTGGGCACCACTCTCAATTTTA---TAGGTCTCTGGCGCCGCTCGTGAATTCCAG
TACTACTATACCTCATTTCTGATCAGATTCCAAAACTGATAATCGAGCTGCTGCTGGCTGCAGTTTCCTCTTCCTGCCAC
CATCTTAGCCGTCGCTCTCATCTCGATCGATTGCATTATTTCCCCCCCGATCCGTTCCTACAGTCTATGGATATGCATTA
TGGAGGTTGAAGAGAACTCACCGGGACGTGTTCGCTGAACGGCCCACGCCGACCTGTAGCT-AGGTCCTGCGCGAAACTT
GTTTATTAAAATTCAGTGCGAGTGTATGTGGATGTCTTGTCGCCTGCTTTCGCTGGCCGTTCCTTCTCC---TTCCTGCC
TCACCACGCCCCTGATGATATTTCTTGGCCCG-----TTTGATATTTTGCACACCAAGTATATGTGTGGTTGGTGCTCGT
GGCCGCCAAGAGGACCCTTGCTCTGCAAATAAGACGTTGCCATTTCTCCGGTTTTTT-ATAAGTTAAGCCAGCGTGAC--
-TTACACATGCGTGCTATGCTAT-GC-TTCACGATAGCAGCTCCGTGACACCGTGACAAAATTGACAATGCCGTGTCAGG
TAAAACGTTGTGTATCTGTTGCCTTGCCCTGCCATTTTCTTTGAGCACCCCGTGGCTCCAAAGCCAAAATTCCGCTGGTC
ATCTGGTGCCAGACTGATCTGATCCTTGCTCCGTCAACCGTCATGATGTCTGCAGGCGGTGGCATGGATGTGTGGCCGTA
CTGCATTGTCTGCTGGAT-GACAATCGACAAGAATGTAT-TATTGGCC------TCTTGACCCCGTCATGAATGCAGCGT
CTCAGAGCTGCACTTCATGTCGAGACCTATTCGGTGAAATCTTGGTGGGATGCGGTTCTTTCTGATAATACACTCCCGAC
GAAGGCCCTATCTTCTCTGTTACTTCTTGTGGGATGGCAGATATGGAATGAAAGGAATGCTCGTGTATTCAGGAGCAAAG
TGGCGCCGGTGGCGATTGTCATGCGAGGCATCAAAGAGGAAGTTTCGATTTGGGCCAATGCAGGTGCTAAGCATTTGCGT
AATGTAATGCCGCGAGAGTAATTGTTTTGTTTTTCCGTCGCTTGGCGATGTCTGTTCTCAAACCTCTCCTTATTAAATGA
AAATGGCAAGTCCTTTGCCTTGTTTCAAAAATGTCGAGACCGATCGAGATTGGGTAGCGAAAACCAACCAAAGCTTGACG
AAATTGGGTATCCAGGTCATGTGATGAAGGCGTTTTACTCCCAAGTCTCAACCGCCGGTGTTACCTCGTTGCGTCTCTCA
CGTGATATGCCTAGCTAGTTCTGGGTTGGTACGAGCTTGGTAGGTAGGACCGGAGGAGTAGGTCTGAACCCGTGAAGTGG
TGACGTCCTGGAGTAAGTAAACCAGAAACAGAAGCTACGCGGGG-AAATCTTCTGTGACGCCAAGGACGATGGACGACAC
CGGTACCCTGCACCG-------------GATGCAGGCGGAGGCCTTCGTCGTCCCTTGGTTTCCTTGTGGGTTCTCTGAA
A------------AAGAACC---CCCACCATGGAGCATCATCTCGGTG----TCTCGGAGACCGGGAAAAGTTGAAGCTA
CTGGGATCCATCTTTTTTACTTT----TGAACAAATTCGTGGCTGCATGATTCCTCTTGCCGGTAGATACAATCATGGTC
AACATGTGGAAAGTTATCATTTCGACCAAAATGAGTTATGAGTGTACTATTCCAGTTTCCAACACT--------------
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-----------------------------GTATACAGAACCTTGACGTTCCACGAACAAGTATACAAAACCTTGTATGGC
ACTTTGTGCCTTGGTGGCAGC------ATATTTCAGTGCATGAAACATCAAACCTTCATGTATCTTGCAGATCGTCAGAC
AACTTGGTCGGAGCAGGCGGGCGAGGAAGGCAGTTGGTCTGTCCTGAGAGATCAAATGGCAGGACCTCGTATTCTGCGCC
TTAAGCGTCGAAATGTTGCCATAATGCACACTGCGCTGTGGCCCATGTCGCGCTACGCGTGCTGACGATTTTTTCCAGTC
GGGTTTTCGGTCAGTCTTTTTTTATTTTTCCCGGTTTCTACTATAATACTCCATCCGTCCCATAATA
>chr2B_1
AAGCCTGTCGGTCATTTTGTCCGCTTCCACATCTTTCGCTGTGCGCTTTGCTTCGGATGCTCGTCACCTGCACGGAAACT
GGGGCAGGACGCATGCCCTCTGACCATG---GTGATG-----CCCACACTACA-CCCGGGGAACTGCGCGCCCGTTTTTC
AAATTTTGTCT----CCCTGGGAGGCTGGGCACCACTCTGAATTTTATACTAGGTCTCTGGCGCCGCTCGTGAAGTCCAG
TACTACTATACCTTATTTCTGATCAGATCCCAAAACTGATAGT---GCAGCTGCTGGCTGCAGTTTCCTCTTCCTACCAC
CATCTTAGCCGTCGCTCTCATCTCGATCGATTGCATTATTATTTGCCAGACCCGTTCCTACAGTCTATGGATATGCATTA
TGGAGCCTGAAGAAAACTCACGGGGACGTGTCCGCTGAACGGCCCACGCGGACCTGTAGCTTAGGTCCTGCATGAAGCTT
GTTTATTAAAATTCAGTGCGAGTGT------ATGTCTTGTTGCCCGGTTTTGCTGGGCGTTCCTTGTCCTCCTTCCTGCC
TCAGCACGCCCCCGATGATATTTCTCGGCCCGTTTGATTTGATATTTTGCACACCAAGTATATGTGTGGTTGGTGCTCGT
GGCCGCGAAGAAGACCCTTGCTCTGCCACTAAGACGTTGCCATTTCTCCAG---TTT-ATAAGATAAGCCAGCGTGCGTG
ACTTCACATGCGTGCTAGTATCTCGC-TTCACGATAGCAGCTCCGTGACACCGTGACAA---------TGCCATGTCAGG
TAAAACGTTTCCTATCTGTTGCCCTGCCCTGCCGTTTTCTTTCA-----------------------------GCTGGTC
ATCTGGTGCC-GACTGATCTGATCCTTGCTCCGTCAACCGTCATGATGTCTGCAGGCGGTGGCATGGATGTGTGGC-GTA
CTGCATTGTCTGTTGGAT-GACAGTCCACAAGGATGTTAGTATTGGCC------TCTTGACCTAGTCATGAGTGCAGCGT
CTGAGAGTTGCAGCTCATGTCAAA--------------------------------------------------------
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--------------------------------------ACCGATCGAGATTGGGTAGCGAAAACCAGCCAAAGCTTGACG
AAATTGGGTATCCAGATCATGTGATGAAGGCATTTTCC-CCCAAGTCTCAACCGCCGGTATCTCTTT-TTGCGTCCCTCA
CGTGATATGCCTAGCTTGTTCTGGGTTGGCATGAACTTGGTAGGTAGGATCGGAGGAGTAGGTCTGAACCCGTGAAGTCG
TGACGTCCTGGAGTACGTAAACCAGAAACGGAAGCCACGCGGGAAAAATCTTGTGTGACGCCAAGGATGATGGACGA---
----------CACCG-------------GATGCAGGCGGAGGCGTTCGTCGTCCCTC---------GTGGCTTCTCTGAA
A------------AACAGTACAGCCCAACATGGAGCATCGTCTCAGCGAGCGTCTCGGAGACTGGGAAAAGTTGAAGCTG
CTAGGATACATCTTTTTTACTTTTGAATGAACAAATTCGTGCCTTCATGATTCCTCTTGCCGGCAGATACAATCATGGTA
ACCATGTGGGAAGTTAC---TTCGAGCAAAATGAGTAGTA----GTATATTCAAATTCCAACACTG--------------
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>chr2A_1
AAGCCTGTCGGACGTTTTGTCCGCTTCCACATCTTTCGCTGTGCGCTTTGCTTCGGATGCTCGTCGCCTGCACGGAAACT
GGGG------------CCTCTGACCCTGGTAGTGATG-----CCCACACTACACCCCGGGGAACTGCGCGCCCGTTTTTC
AAATTTTGTCTGTCTCCCTGTGAGGCTGGGCACCACTCTGAATTTTATTATAGGTCTCTGGCGCCGCTCGTGAATTCCAG
TACTACTATACCTCATTTGTGATCATATTCCAAAACTGATGGTCGAGCTGCTGCAGGCTGCAGTTTCCTCTTGCTGCCAC
CATCTTAGCCGTCGCTCTCATCTCGATCGATTGCATTATTATTTGCCAGACCCGTTCCTACAGTCTATGGATATGCATTA
TGGAGCTTGAAGAGAGCTCACCGGGACGTGTCCGCTGAACGGCCCACGCCGACCTGTAGCT-AGGTCCTGCATGAAGCTT
GTTTATAAAATTCAG-------------------------TGCCCAGTTTCGCTGGACGTTCCTTGTC----TTCCTGCC
TCACCACGCCCCCGATGATATTTCTTGGCCCG-----TTTGATATTTTGCACACCAAGTATATGTGCGGTTGGTGCTCGT
GGCCGCGAGGAGGACCCTTGCTCTGCAATTGAGACGTTGCCATTTCTCCAG---TTTTATAAGTTAAGCCAGCGTGATGT
GTTACACATGCGCGCTACCAGTGTCTTTTCACGATAGCAGCTCCGTGACACCGTGACAAA-TTGACAATGCCGTGGCAGG
CAAAACGTTGTGTAC-----------------------------------------------------------------
----------------------TCATTCATCGGTGCTCCGTCATGATGATGTACCCAGGCGGTATGGATGTGTAGC-TTA
ATGCATTGTCTGTTGCTACGACAATCAACAAGGGAGATGCATTATATGTTCTCATCTTGACCTCGCCATAAGTGCAGCGT
CTCTGAGTTAAACTTCACGTCGAA--------------------------------------------------------
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--------------------------------------GCCGATCGGAATTTGGTAGCGAAAACCAACCC-AGCTTGACG
AAACTGGGTATCCAGCTCATGTGATGAAGGCATTTTCC-TCCAAGTCTCAACCGCCGGTATCTCTTT---GCGTCTCTCG
CGTGATATGCCTAGCTAGTTATGGGTTGGTACGAACTTGGTAGGTAGGATCGGAGGAGTAGGTCTGAACCCGTGAAGTCG
TGACGTCCTGGAGTAAGTAAACCAGAAACAGAAGCTACGCGTGAAAAATCTTCTGTGACGCCAAGGATGATGGACGA---
----------CACCGGCACCCGGCACCGGATGCAGGCGGAGGCGGTTGTCGTCCCTT---------GTGGGTTCTCTAGA
AAAAAAAACAGCCAACAGTACAGCCCAACATGGAGCATCGTCTCAGCG----TCTCGGAGACCGGGAAAAGTTGAAGCTG
CTAGGATCCATCTTTTTTGCTTTTGAATGAACAAATTTGTGGCTGCATGATTCCTCTTGCCGGTAGATACAATCATGGTA
GCATGT--GGAAGTTGC---TTCGAGCAAAATGAGTAGTACGTAGTATATTCAAGTTCCAACACTGCACAGTAGTACTCC
CTCCGTTCCAAATTACTTGTCGCAGAAATGAATGTATCTAAATAGTTTTAGATACATTCATTTCTGCGACAAGTAATTTG
GAACGGAGGGAGTAGTCCGGATGAAGATCGTATACAGAACCTTGAGGTTCCACGAACAAGTATACAAAAC----------
--------CCTTGGTGGTAGTAGTACTATATTTCAGTGCATGAAACATCAAACCTTCGTGTACCTTGCAGATCATCAAAC
CCTTGGT-------------------------------------------------------------------------
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>SNPs
-------------------------S------------------------------------------------------
------S--S----------------S---SS-SSSSSSSSS-------S------------------------------
---------------S-----------------------S----------------------------------------
-----------------------------------------S--------------------------------------
----------------------------------------SSSSS--S--S-----------------------------
-----S-------------------------S---------------------------------------SS---S---
-------------------------SSSSSS---------S---S-S---------S--------S--------------
------------S-------------------------------------------------------------------
------S---------------------S--------------------S-SSS-----------------------S--
-----------------SSS-S--------------------------------------S-------------------
-----------------------S---------S--------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
----------S-----------------------------------------------------------------S---
------------S-------------S-----S----SS-----------------------S--------S--------
-------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
---------------S---------------S----S-S--------------------S-SS-S-SS------------
----------------------------------S--------------S----------------------------S-
-------------------------------------------S-----------------------S---------SSS
SSSSSSSSSS---------------------------------S-------------SSSSSSSSS--------------
---------------S-SSS-------S-----------S----S-S--------------------------------S
--S----------------------------------------------------------------------------S
-S-------S------SSSS-----S----------SS-SS--SSSS-----S----S-S-SSSSS--------------
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---------------------------------------------S------------------------SSSSSSSSSS
SSSSSSSS---------S--S------------------------------------S----S----------S---S--
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_781
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-----------------------------------------TCCGTGACACCGTGACAAAA-------------------
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>reverse_2397
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----------------------------------------------------------------------------AGTC
GGGTTTTCGGTCAGTC---------------------------------------------------
