>input_sequence_85341
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---------------------ATGCAGCGGAGCAGCTCGTTCGGGACGTCGTGGGCGGACCAGTGGGACACCGGCGCCGA
CCCGAGCCCGCGGGCGCGCGGCGGCGGCAACGGTGGCGGCGACGGCAAGAAGGGCGGCGTGGAGAAGACCAAGGCGGCCG
CGGCCACCGGGCTGAAGAAGGTCAAGGCCGGCACCGCGCAGGGGTTCCAGTGGATCAAGGACAAGTACCAGAAGAAGAGC
GCCGGCAAGAGCGGCAAGCAGGGCGGCGGCTCCGAGGTGGCCGCCGGGTACTGA--------------------------
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>chr7A_1_TraesCS7A01G196000
TACTCCTTATGCGCGTGCCTACGTCCTCGGACACGTTGTTTTCGGTCGGCGGCCACCGCGTGCATCGTCGGCCGGAGCCA
GACAGGATAGAACAAAATAATATGGGGAAAGGCGGCGGCTATTCGTTCTCCACAGCAGTCAGCCGGGCATGCAATTCCTG
CCTTCCACGCCTGGTGAAACGAGCGCGCCATGAAGCCTCCTCCCTC-AAAGAATCGATTCACTCGGGCCCGCACCGTCCC
GTCCTTAAAAAAGGCCAAACGGA-CCGTCACAGCTTGTTCCCGTGTACCGAAAGCAGTTCCTTTCCATGTCAATAAAAAA
GCAGTTCCTTCTGGTTCGCCTCCCGACCGTTTTAAGTCAGCACAACAGGCGCCGACGGGCGGGCCAACGTCCCCCCATGG
ACCCACGGCCCC-GTCTCACCGCAGCCGGGAAGCTTCCCCAACCTCACCTCACGCTGCCTGCCGAGTCAGCGCGTTGCCC
TCCTCCACACCACGCCGCCGACTCCGAGGCTC---AAACCGCAGGCAGGAGCAGGACCATTCCAGAACGCGTGGCCGGGC
GTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTATAAAGCCCCGGCCTCCCGTTCCT-----------------------------------------AC
GCAGGCACACAAGGCATCCATCCGTTCCTCGGTTCCTAAGTCAGCAGGGTTTGTTC--------------ATCGACGGTC
GTTCCTTTCGTCGTCGCCGGCATGCAGCGGAGCAGCTCGTTCGGGACGTCGTGGGCGGACCAGTGGGACACCGGCGCCGA
CCCGAGCCCGCGGGCGCGCGGCGGCGGCAACGGTGGCGGCGACGGCAAGAAGGGCGGCGTGGAGAAGACCAAGGCGGCCG
CGGCCACCGGGCTGAAGAAGGTCAAGGCCGGCACCGCGCAGGGGTTCCAGTGGATCAAGGACAAGTACCAGAAGAAGAGC
GCCGGCAAGAGCGGCAAGCAGGGCGGCGGCTCCGAGGTGGCCGCCGGGTACTGACCGGTCATCTGAGACGTTT-------
------GGATATGTATGGAATC---GTCATGGACCGATGATGTTCTTATAGTTTATAAGTTCTAGAACTTTTTCTAATCC
CAACTAAAAAGTCTCTAGTGCTTAAAAAGTTCCTTCCTATTTGTTTTCAGAGATTAAAAAGTCCTTAGTCCCTTTCTAGA
GATTATTAAATGACCATGTTGCTTCTAGTATATAAAAAAATAACAATCAAACAAACCATGGGATGGCGGGCCATTGAATA
CATGGAGATGCATTGTTGAAAAAGTCCCCAAAAAGACTCTTCTTAAGAATCTTCTTCATTTAGTCCCAAGTGTCTAGTTC
AGTCCCTAAAATATCCCTCCCGTTTGATAAAAAAGTCTTTAAAAAAGACCTTTTTAGTCCCTACACATAAAAAAGTCCCG
GCAAACACATCCCGTTATTTTAGTGTTGTGCCTGCGGACTGCTTAGCTTTGCTCTGTTTTATAGCCTTC---TCATGTAC
ATAAATGAAGGATTTGACTTTGTACTTTTTTTTTCTTCATATTTGATCACTGTTTCAGACTTGCTTCTGATTGGTGCTGG
TGATTAACTACCGATT-----AAAATTGATCCTTGATTCATCTCCAGCAAACTAGAAAAGCACCGCTTGTGGGGAGTCTC
CCCTTTCCTTTAAGGGGACCGCTAGGCGCGGGTGTGCTTGCCGAAATTTTCGGCCGGTCTACGCCCTAGCGTTGGATATA
AGCACATATAACCATCAGATCCAGAGTAGAAAAAAAAAATCTCCTTCTCGCTCACGTACAACTCCATGACATCTCACAGC
CACTTGCTAGCAGCTCGCCGGAGCCCCTTGTCGGCGCGCTCGCCGGAGCCGCTGGCTGGTTGCAGCACCGGTGCTCACTG
GTCCACCCCGGCGCCCCCCGCTAGCAGCTCGCCTGACCCGCTTGTCGGCGTGCTCGTTGGGGCCGCTTGCCGGTTGTAGC
GCCGGTTCTCACTGGTCTGCCCTGAGGCCTCCCGCTAG
>chr7D_1
TACTCGTTATACGCGTGCCTACGTCCCTCGACGTGTTGTTTTCGGTCGGCGGCCACCGCGTGCATCATCGGCCGGAACCA
CACAGGATAGAACGAAAAGAATA-GGGAAAGGCGGCGGCTATTCGTTCTCCACAGCAGTCAGC-GGGCATGCAATTCCTG
CCTTCCACGCCTGGTGAAAAGAGCGCGCCAAGAAGCCTCCCTCTCCTAAAAAATCGATTCACTCGGGCCCGCACCGTCCT
AAAAGAGAATGGAAATCCATGCGCCCGTCACGGTTTGTTCCCGCGTACCGAAAGCAGTTCCTTTC---------------
------------GGTTTGCCCCCCGACCGTATTCAGTCCGCACAGCAGCCCCCGACGGGCGGGCCAACGTTCCCGG-TGG
ACCCACGGCCCC-GTGACACCGCAGCCGGGAAGCTTCCCCA-----ACCTCACGCTGCCTGCCGAGTCAGCGCGTTGCCC
CCGTCCACACCACGCCGCCGACTCCAAGGCTCCTCAAAGCGCAGGCAGGAGCAGGACCATTCCAGAACGCGTGGCCGGGC
GTCACGGCTGAGCATCTCTCGTGCCCTCCGCCACAAGATTTCCAACCCC-----------------CACGACAGGACCAT
TCCTCTCGCCCCGCCTCCGC------------------------------------------------------------
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-----------CTATAAAGCCCCGGCCTCCCGTTCCTCCTCTCCGGCGACCACAAGAAGCAAGACTTTGTCCCTACGCAC
GCACGCACACAAAGCATCCATCCGGCCCTCGGTTCCTAAGTCAGCGGAGTTTTTGTCCGT--GTTGATCGATCGACGCTC
GTCCTCT---TCGTCGCCGGCATGCAGCGGAGCAACTCGTTCGGGACGTCGTGGGCGGACCAGTGGGACACGGGCGCCGA
CCCGAGCCCGCGGGCGCGCGGCGGCGGCAACGCCGGCGGCGGCGGCAAGAAGGGCGGCGTGGAGAAGACCAAGGCGGCCG
CGGCCACCGGGCTGAAGAAGGTCAAGGCCGGCACCGCGCAGGGGTTCCAATGGATCAAGGACAAGTACCAGAAGAAGAGC
GCCGGCAAGAACGGCAAGCAGGGCGGCGGCTCCGAGGTGGCGGCCGGGTACTGACCGATGATCCGAGACGT---------
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>chr7B_9
--------ATACGCGTGCCTACGTCCCTCGACGTGTTGTTTTCGGTCGGCGGCCACCGCGCGCTTCGTCGGCCGGAACCC
GACAGGATAGAAAAAAAAATA--GGGGAAAGGCGGCCGCTATTCGTTCTCCACAGCAGTCAGCCGGGCATGCAATTCCTA
CCTTCCACGCCTGGTGAAATGAGCACACGACGAAG---CCTCCCTC-AAAGAATCGATTCACTCGGGGCCGCACCGTCCT
TGAAAAAGAAC-----CCATGCGCCCGTCACGGTTTGTTCCCGCGTACCGAAAGCAGTTCCTTTC---------------
------------GGTTCACCTCCCGACCGTATTGAGTCAGCACAACAGTCCCCGACGGGCGGGTCAACGTTCCCGG-TGG
CCCCACGGCCTCGGTCTCACCGCAGCCGGGAAGCTTCCCCG-----ACCTCACGCTGCCTGCCGAGTCAGCGCGTTGCCC
TCGTCCACACCACGCCGCCGACTCCAAGGCCC---AAGCCGCAGGCAGGAGCAGGACCATTCCAGAACGCGTGGTCGCGC
GTCACGGCTGAGCATCTCTCGTGCCCTCCGCCACAAGATTTCCAACCCCCTCTCCCTCCTAGCTGACACGACAGAACCAT
TCCTGTCTCCCCGCCCCCGC------------------------------------------------------------
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-----------CTATAAAGCCCCGGCCTCCCGTTCCTCCTCTCCGGCGACCACAAGAAGCAAGACTTTGTCCCTACGCAC
GCACGCACACAAAGCATCCATTCGTCCCTCGGTTCCTAAGACAGCAGAGTTTGTTCGTGTTAGTTGATCGATCGACGGTC
GTTCCTT---TCGTCGCCGACATGCAGCGGAGCAACTCGTTCGGGACGTCGTGGGCGGACCAGTGGGACACCGGCGCCGA
CCCGAGCCCGCGGGCGCGCGGCGGCAA---------CGGCGACGGCCAGAAGGGCGGCGTGGAGAAGACCAAGGCGGCCG
CGGCCACCGGGCTGAGGAAGGTCAAGGCCGGCACCGCGCAGGGGTTCCAGTGGATCAAGGACAAGTACCAGAAGAAGAGC
GCCGGCAAGAACGGCAAGCAGGGGGGCGGCTCCGAGGTGGCGGCCGGGTACTGACCGATGATCCGAGACGTTTCCTTCGT
GCGTGTGGATATATATGGAGTACTAGTCATGGACCGATGATGTTCTTG--------------------------------
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-----------------TTTTAGTGTTGCGGCTACGGACTGCTTAGCTT-GCTCTGTTTTTAGCCTTTCTCATCATGTAC
ATAAATGAAGGATTTGATTTTTGTTCTGG---TTCTTCATATTTGATCACTGTTTCAGACTTGCTTCTGATTGGTGCT-G
TGATTAACTACCGTACCGATCAAAATTGATCCTTGATTCATCTCCAGCAAACTATAAAAGCACCGCTT------------
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>SNPs
-----S----S---------------SSS---SS------------------------------------------S---
-----------------S--SSS---------------------------------------------------------
-------------------S----------S------------------------------------------------S
SSSSSS----SSSSSSSS-S-SS--------S-S---------S---------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSS------------------S--S--------------S-S-------------------S---SSS---
-----------------------------------------SSSSS----------------------------------
--S----------------------S------------------------------------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
---S--------S------------S---------------------S--------------------------------
-------SSS------------------------S---------------------------------------------
--------------------------------SS----------------------------------------------
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----------S------------------------------S---------------S-S---S----------------
------------S------S-S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-----------S-S--S---------------S----------SSSS-S--------------
-----------------S---SSSSS-SSSSS----------------------------------------------S-
-------------SSS--------------------------------------S-------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_986
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------ACACAAGGCATCCATCCGTT------------------------------------------------------
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>reverse_2030
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-----------------------------GGGTGTGCTTGCCGAAATTT-------------------------------
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