>input_sequence_85317
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-------------------------------------------ATGGGCGAAGCAGATGCTGATTTGGTAGCGATGATGG
TAGAGCTCGGATTGAAGGAAGGAGACCTGCAAGATGTTGTGGTTGAGGAGGAGGAACTCCCTGAAGAATCAATCAGATGG
ATGGCCCTAGCTAGGGTTCATACTGAGAAAACATATAGCCAATATTGGTTTTTCAAGAATATGAGGGTTGCTTGGGACCT
GGCTAAGGAGGTGAAAATCAGACCACTGGAGGACAATCTGTACACGTTGCAATTCTTGTGCCTAGGCGATTGGTAG----
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>chr5B_1_TraesCS5B01G216700
GTCCTATAAATTCCCCTAATAATTTTCATGTTGAACCAACCTCATTTGAGTTCCCAAAATGCCCCTGCGATTTTTATCTT
GTGGTCCAACAATAATTAAATTGGCCTTTCCAATTTCTAAAAATGGTTAGCCAACTCTTTCTGACCCCAAACTTTTTATG
CAACTTCACTTTTTTGATATCTATTTTTTTTGCAAAGTGCCACAATTAACAAACATAATTCAGTAGCTCTTTTAAATACG
AAAATAGAGGCAAATAAAAAAAGAAAAGAAAAGGCCACCCCCCCCCCTAGTGGGCCTCGTGGCCCAGTTGGCCATCCAGC
TGGTCGGCCAGGCTGGCCCACTCGAGCCACCCACGCCGCCGAGGGGATAAGTCTCCCCCTCATCCTATGCCCAAGTATCC
CCTCTCGTTAGGGTTTTGCTTCCTCTCACCAGCGGCGGCGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCTGATCTACCCTGCCTCTCTC
CCCTCGCCGGTGATCTGGGGCTCGTGGGCCTCGACGATGGCGGGAACGAAGGGAGCAATGGGGACAATACCGCCTGCGGA
ACCAGTTTCTTTAGGCAAGAGATCTAAGGAGGACG---CGCCCATGGGCGAAGCAGATGCTGATTTGGTAGCGATGATGG
TAGAGCTCGGATTGAAGGAAGGAGACCTGCAAGATGTTGTGGTTGAGGAGGAGGAACTCCCTGAAGAATCAATCAGATGG
ATGGCCCTAGCTAGGGTTCATACTGAGAAAACATATAGCCAATATTGGTTTTTCAAGAATATGAGGGTTGCTTGGGACCT
GGCTAAGGAGGTGAAAATCAGACCACTGGAGGACAATCTGTACACGTTGCAATTCTTGTGCCTAGGCGATTGGTAGCGGG
TGATGCAAGATGGCCCCTGGACGTTCAAGGGTAA--CGGTGGTTATTACTCCCTATGATGGTTTCACCAAGACCTCCCTG
CTTGATCTCACAAAGATAGAAATATGGATGCAAATCCATGACCTACCCGACGGTTACTATCCAAAGATTAAAGCACTCTC
AACCACGGTGGGAGAATTCATATACGCCGAACCAAAATCTCAGGACTTTGAAGGGAACTTCGCACGCGTTCGGGTCAGGA
TTGACGTGACTAAACCCTTGAAGAATGTCGTTTCCCTGGTGATCAAGAAGAAGGAAGGTATGCAGCGTGTAATCTTCAGG
GTTAAATTTGAAAGGCTGCCAGACTGGTGTGCTATATGTGGCTATTTAGGTCACCTTTTCAAGGAATGTGGAGATGGCGT
TTGGCCACAGGAGGCGTTGGTCTTCAAGGACCTGAAAGCTTCATGGTTTAAAGGACCGGGGCTAGGCCCTTGTGAAACTA
GAGGGAAAAGAAGTGGAAGGGGTCGAGGTCGCTCTAGTGGTGGCCGGGGCCGCGGCGCCACCCAATATAACACTATGGAA
CTAGAAGAGAACATGGAAGAAGAGGATCACAAACGAGATGTTATGATGGAAGATGCCGACCAGAACAGGAAGAGGGGGGA
TATGGTGCCGGCTAGTCTCAAACCACAGCTTCCACCCACATCAGTTGTGACGCACAAAGCCCCAATGCTTCCATCACCGA
AAGTGCCAGTAAGTCCCTCCTCGAAACAGGAGTCGAAGAGGACCAAACCCAACTCAAGTGCTAACGAGACGGCCACACCA
AAAAGTTTAGCTCCTACCAAAAACCCCGATGCATGTTTGGCGAGCCCCCTAGGGGGGTCGCGCCAGGCGCAATGGGTCTC
CTGTGTTGGAACTGCCGCGGGGCTGGCAAACCCGCGACAGTCAATGAGCTTCGTGACCTCACGAGGCGATTTGCCCCCTC
CATAGCTTGTATTATTGAAACACAGTTGGAGGGCTCTC
>chr6D_398
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-----------------------------------------------------------------------------TCC
CCTCTCGTTAGGGTTTTGCTTCCTCTCGGCGGCGGCGGCGATTTCTTCACCCCCCACCGTAGAG----------------
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--------------------------------------------------------AACCTGATCTACGCTGCCTCCCTC
CCCTCGCCGGTGATCTGGGGCTCGTGGGCCTCGACGATGGCGGGATCGGAGGAAGTGATGGGGACAATACCGCCTGCGGA
ACCAGCTTCTTCAGGCAAGAGATCTAAGGAGGACGGCGCGCCCACGGGCGTGGCAGATGCTGATCTGGAAGCAATGATGG
CGGAGCTCGGATTGAAGGAAGGAGACTTGCAAGATGTCGTGGTTGAGGAGGAGGAACTCCCTGAAGAATCAACCAGATGG
ATGGCCCTTGCTAGGGTTCATACAAAGAAAACGTACAGCCAATATTGGTTTTTCAAGAACATGAGGGTTGCTTGGGATCT
GGCCAAGGAGGTGAAAATCAGACCGCTGGAAGACAATCTGTACACGCTGCAATTCTTGTGCCTAGGCGACTGGGAACGGG
TAATGCAAGATGGCCCTTGGACGTTCAAGGGAAAAGCGGTGGTCATTACTCCTTATGATGGTTTCACAAAGCCCTCCCTG
ATTGATCTCACAAAAATAGAAATATGGATGCAAATCCATGACCTGCCCGATGGATTTTATCCAAAGATCAAAGCGCTCTC
AGCCACGGTGGGAGAATTCATATACGCCGAACCAAAATCTCAGGACTTTGAAGGGAATTTTGCACGCGTTCGCGTGAGGA
TTGACGTGACTAAACCCTTGAAGAATGCCGTTTCACTGGTGATCAAGAAGAAGGAAGGTATGCAGCGTGTAATCTTCAGG
GTAAAATTTGAAAGGCTGCCGGACTGGTGTGCGGTATGTGGCTATTTAGGGCATCTTTTCAAGGAGTGTGGAGACGGCGT
ATGGCCACAGAATGCGCTGGTCTTCAAGGACCTGAAAGCTTCATGGTTCAAAGGACCTGGTCAAGGCCCTGGCAAAAGCA
GAGGAAACCGGAGTGGAAGGGGCCGAGGTCGCTCTAGTGGTGGTCGGGGCCGTGGCGCCACCCAATATAACAGTATGGAA
TTGGGAGATAACATGGAAGAAGAGGATCACGAACGTGATGTCATGATGGAAGATGCTGATCAAAACAGGAAGAGGGGGGC
TCTGGTGCAGCCTATTCATAAACCACAGCTTCCCCCTACACCTGTCACGACGAACAAAGCCCCAATGCTTCCACCACCGA
AAGTGCCAGTAAGTCCCTCCTCGAAACAGGAGTCGAAGAGGACCAAACCCAGCTCAAGTGCAAACGAGACTTCTACACCA
AAGAGTTCAGCTCCTACCAAGAACCCTGATGCGCGTTTGGCGGGCCCCCAAGTGGGGTCGCGCCAGGCGCAATGAGTCTC
CTGTGTTGGAACTGCCGCGGGGCTGGCAAACCCGCGACAGTTCGAGAGCTTCGTGATCTCACGAGGCAATTTGCCCCCTC
TATAGCTTGTATTGTTGAAACACAGTTAGAGGGCTCTC
>chr3D_398
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-----------------------------------------------------------------------------TCC
CCTCTCGTTAGGGTTTTGCTTCCTCTCGACGGCGGCGGCGTTTTCTTCACCCCCCACCGTAGAG----------------
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--------------------------------------------------------AACCTGATCTACCCTGCCTTCCCC
CCCTCGCCGGTGATCTGGGGCTCGCGGGCCTCGACGATGGCAGGATCGGGGGAAGCGATGGGGACAATACCACCTGCGGA
ACCAGCTTCTTCAGGCAAGAGATCTAAGGAGGACGGCGCGCTGTTGGGCGCGGCAGATGCTGATCTAGAAGCAATGATGG
CGGAGCTCGGATTGAAGGAAGGAGACTTGCAAGATGTCGTGGTTGAGGAGGAGGAACTCTCTGAAGAATCAACCAGATGG
ATGGCCCTTGCTAGGGTTCATACGGAGAAAACGTATAGCCAATATTGGTTTTTCAAGAACATGAGGGTTGCTTGGGATCT
GGCTAAGGAGGTGAAAATCAGACTGCTGGAAGATAATCTGTACACGCTGCAATTCTCGTGCCTAGGCGATTGGGAACGGG
TAATGCAAGATGGCCCTTGGACGTTCAAGGGAAAAGCGGTGGTCATCACTCCTTACGATGGTTTCACAAAGCCCTCCCTG
ATTGATCTCACAAAAATAGAAATATGGATGCAAATCCATGACCTGCCCGATGGTTTTTATCCAAAGATCAAAGCGCTCTC
AGCCACGGTGGGAGAATTCATATACGCTGAACCAAAATCTCAGGACTTTGAAGGGAACTTTGCACGCGTTCGTGTGAGGA
TTGACGTGACTAAACCCTTGAAGAATGCCGTTTCACTAGTGATCAAGAAGAAGGAAGGTATGCAGCGTGTAATCTTCAGG
GTAAAATTTGAAAGGCTGCCGGACTGGTGTGCGGTATGTGGCTATTTAGGGCATCTCTTCAAGGAGTGTGGAGACGGTGT
ATGGCCACAGGAGGCGCTGGTCTTCAAGGACCTGAAAGCTTCATGGTTCAAAGGACCGGGGCAAGGCCCTGGCGAAAGCA
GAGGAAACCGGAGTGGAAGGGGCCGAGGTCGCTCTACTGGTGGCCGAGGACGTGGCACCACCCAATATAACAGTATGGAA
TTAGAAGACAACATGGAAGAAGAGGATCACGAACGTGATGTCATGATGGATGATGCTGATCAAAACAGGAAGAGGGGAGC
TCTGGTGCAGCCTAGTCATAAACCACAGCTTCCCCCTACACCTGTCACGACGAACAAAGCCCCAATGCTTCCACCACCGA
AAATGCCAGTAAGTCCCTCCTCGAAACAGGAGTCGAAGAGGACCAAACCCAGCTCGAGTGCGAACGAGACGTCTGCTCCA
AAGAGTTCAGCTCCTACCAAGAACCCCGATGCGCATTTGGCGGGCCCCCAAGTGGGGTCGCGCCAGGCGCAATGAGTCTC
CTGTGTTGGAACTGCCGCGGGGTTGGCAAACCCGCGACAGTTCGTGAGCTTCGTGATTTCACGAGGCAATTTGCCCCCTC
TATAGCTTGTATTGTTGAAACACAGTTAGAGGGCTCTC
>chr2B_857
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--------------------------------------------------------AACCTGATCTACCCTACCTCTCTC
CCCTCGCCGGTGATCTGGGGCTTGCGAGCCTCGACGATGGCGGGATCGGAGGAAGCGATGGGGACAATACCGCCTGCGGA
ACCAGTTTCTTCAGGCAAGAGATCTAAGGATGACGGCGCGCCCATGGACGATGCAGATGCTGATCTGGTAGCGATGATGG
CAGAGCTCGGATTGAAGGATGGAGACCTGCAAGATGTTGTGGTTGAGGAGGAGGAACTCCCTGAAGAATCAATCAGATGG
ATGGCCCTAGCTAGGGTTCATACTGAGAAAACATATAGAAAATATTGGTTTTTCTAGAATATGAGGGTTGCCTGGGACCT
GGCTAAGGAGGTGAAGATCAGACCGCTGCAGGACAATCTGTACACGCTGCAATTCTTGTGCCTGGGCGACTGGGAGCGGG
TTATGCAAGATGGCCCCTGGGCGTTCAAGGGAAAAGCGGTGGTCATTACTCCCTATGATGGTTTCACAAAGCCCTCCCTG
ATTGATCTCACAAAGATAGAAATATGGATGCAAATCCACGACCTGCCCGACGGTTTCTATCCAAAGATTAAAGCGCTCTC
AGCCACGGTGGGAGAGTTCATATACGCTGAGCCAAAATCTCAGGACTTTGAAGGGAACTTCGCACGCATTCGGGTGAGGA
TCGACGTGACTAAACCCCTGAAGAATGTCGTTTCCCTGGTGATCAAGAAGAAGGAAGGTATGCAGCGTGTAATCTTCAGG
GTTAAATTTGAAAGGCTGCCGGACCGGTGCGCTGTATGTGGCTACTTAGGTCACCTTTTCAAGGAATGTGGAGATGGCTT
TTGGCCACAGGAGGCGCTGGTGTTCAAGGACCTGAAAGCTTCTTGGTTTAGAGGACCGGGGCAAGGCCCTGGTGAATCTA
GAGGGAAAAGGAGTGGAAGGGGTCGACGTCGCTATAGTGGTGGCCGGGGCCGCGGCGCCACCCAATATAACACTATGGAA
CTAGAAGAGAACATGGAAGAAGAGGATCATGAACGAGATGTTATGATGGAAGATGCCGACCAGAACAGGAAAAGGGGGGC
TATGGTGCCGGCTAGTCTCAAACCACAGCTTCCCCCCACGTCAGTTGTGACGAGCAAAGCCGCAATGCTTCCATCACCGA
AAGTGCCAGTAAGTCCCTCCTTGAAACAGGAGTCGAAGAGGACCAAACCCAGTTCAAGTGCTAATGAGACGGCCACATCA
AAAAGTTCAGCTCCTACCAAAAACCCAGATGCGCGTTTGGCGGGCCCCCTAGCGGGGTCGCGCCAGGCGCAATGAGTCTC
CTGTGTTGGAACTGTCGCAGGGCTGGCAAACCCGCGACAGTCAATGAGCTTCGTGACCTCACGAGGCGATTTGCCCCCTT
CATAGATTGTATTGTTGAAACACAGTTGGAGGGCTCTC
>chr3B_857
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--------------------------------------------------------AACCTGATCTACCCTGCCTCTCTC
CCCCCGCCGGTGATCTGGGGCTCGTGAGCCTCGACGATGGCGGGATCGGAGGAAGCGCTGGGGACAATACCGCCTGCGGA
ACCAGTTTCTTCAGGCAAGAGATCTAAGGAGGACGGCGCGCCCATGGGCGTAGCAGATGCTGATTTGGAAGCAATGATGG
CAGAGCTCGGATTGAAGGAAGGAGACCTGCAAGATGTTGTGGTTGAGGAGGAGCAACTCCCTGAAGAATCAACCAGATGG
ATGGCCCTAGCTAGGGTTCATACTAAGAAAACGTACAACCAATATTGGTTTTTCAAGAACATGAGGGTTGCTTGGGATCT
GGCCAAGGAGGTGAAAATCAGACCGCTGGAGGACAAATTGTATACGCTGCAATTCTCGTGCCTAGGCGACTGGGAATGGG
TAATGCAAGATGGCCCTTGGACGTTCAAGGGTAAATCGGTGGTCATTACTCCCTATGATGGTTTCACAAAGCCCTCCTTG
ATTGACCTCACAAAGATAGAAATATGGATGCAAATTCATGACCTGCCCGATGGTTTTTATCCAAAGATTAAAGCGCTCTC
AGCCACGGTGGGAGAATTCATATACGCCGAACCAAAATCTCGGGACTTTGAATGGAATTTTGCACGCGTTCGTGTGAGGA
TTGACGTGACTAAACCCTTGAAGAATGCCGTTTCCCTGGTGATCAAGAAGAAGGAAGGTATGCAGCGTGTAATCTTCAGG
GTTAAATTTGAAAAGCTGCCTGACTGGTGTGCTGTATGTGGCTATTTAGGGCACCTTTTCAAGGAGTGTGGAGATGGCGT
TTGGCCACAGGAGGCGTTGGTCTTCAAGGACCTGAAAGCTTCATGGTTCAAAGGACCGGGTCAAGGCCCTAGAGAAACCA
GAGGAAAACGGAGTGGAAGGGGCCGAGGTCGCTCTAGTGGTGGCCGGGGCCGTGGCACCACCCAATATAACAGTATGGAA
TTAGAAGAGAACATGGAAGAAGAGGATCACGAACGTGATGTTATGATGGAAGATGCTGATCAAAACAGGAAGAGGGGGGC
TCTGGTGCAGCCTAGTCTTAAACCACAGCTTCCCCCTACACCAGTCATGACGAACAAAGCCCCAATGCTTCCACCACCGA
AAGTGCCAGTAAGTCCCTCCTTGAAACAGGAGTCGAAGAGGACCAAACCCAGCTCAAGTGCAAATGAGACGGTTACACCA
AAAAGTTCAGCTCCTACCAAGAACCCCGATGCGCATTTGGCGGGCCCCCTAGTGGGGTCGCGCCAGGCGCAATGAGTCTC
CTGTGCTGGAACTGCCGCGGGGCTGGCAAACCGGCGACAGTTCATGAGCTTCGTGACCTCACGAGGCGATTTGCCCCCTC
CATAGCTTGTATTGTTGAAACACAGTTGGAGGGCTCTC
>chr2A_1115
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-----------------------------------------------------------------------------TGG
ATGGCTCTAGCTAGGGTTCACACAGAGAAAACATATAGCCAATATTGGTTTTATAGGAATATGAGGGTGGCCTGGGACCT
AGCTCAGGAGGTAAAGATTAGACCACTCGAAGATAATATGTACTCAATGCAATTCTCCTGCCTGGGTGACTGGGAGAGGG
TTATGGGGGATGGCCCTTGGAACTTCAAGGGGAAAGCAGTAGTTCTCTCGGAGTACGATGGCTTCACAAAGCCGTCGTCT
ATAGAGCTCAATAAATTGGACATCTGGATTCAGATCCACGACCTGTCGGATGGCTTCTTCTCTAAGGTCAAAGCTTTGTC
GGCGACTGTGGGAGAATTCATATATGCTGAGCCTAGATCCCCGGATTTTGAAGGAAATTTTGCTAGAGTTCGAGTCAGGA
TCGATGTCACTAAAACATTGAAGAACACTGTCTCACTGGTAATAAGGAAGAAGGATTCGATGGAGCGAGTCATCTTTAGA
GTTAAATATGAAAGATTGCCGGATTGGTGTGCGGTTTGCGGACATCTAGGCCACCAACACAAAGAGTGCGGGGATGGGGT
CCATGCCCCAAAGACGCTGGTCTTCAAAGACATCAAGGCAACGTGGTTTAAAGG--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
---------------------------SS-S----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
---------------------------------------------S--S---S---S-----------------------
-----------S--------------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S--------------------------S------
-S-----------------------------------------------------------------S---S--------
S-------------------------------------------S----------S------------------S-----
-S------------------------------------------------------------------------------
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--------------------S------------S----------------------------------------------
--------------------------------------------------------------S-------S---------
----------S---------------------------------------------------------------------
------------------------------S------------------------------------------------S
---------------------------------S------------------S---------------------------
---------------------------------------------------S----------------------------
-------S------------------------SS--------S---------S---------------------S-----
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-------------S------------------------
>forward_149
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-------------------------------------------------GCCAACTCTTTCTGACCCCA-----------
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>reverse_1274
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-------------------------------------------------------------------------TAGCGGG
TGATGCAAGATGG-------------------------------------------------------------------
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>forward_391
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---------------------------------------------------TCTCCCCCTCATCCTATGCC---------
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>reverse_1352
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-----------------------------------------------------------------------ACCTCCCTG
CTTGATCTCAC---------------------------------------------------------------------
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