>input_sequence_85226
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-------------------------------------------------------ATGGCGGCGGCGGGCCCAGCCAAAA
CGGAGGTGCTGTCCCTCTTCCGCGCCTTCCTCCGCACGGCGAGGCAGTTCTCCGACTACAACATCCGCGAGTACACGCGG
CGCCGCGCGGCGGACGCCTTCCGCGAGAACCGCGCCCTCGCCGACGCGCCGGCCGCGGCGGCGGCCTTCGCGGACGGGAA
GCAGCAGCTGGAGGTGGCCAAGAGGCAAGTGCTGGTGTACTCTCTGTACGCGCCCAAGGCCAAGAGCGTTGTGGAGATGA
AGATTCAGTGA---------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G219500
TACATGATACAAAAGGAAAAGAAACT-GCAATATAAGCTAAAGTTACCTTCTCTTCTGTGTAATAAATAGTAAAGAGTAA
ACACAAATATGGTGCACAGTTGCAAAAGACAACGGAAGCCGAGTAGAAACACAGAAATTCAC--TTGTATAATTAAGAAC
AATATCATATCAACTGTGCATCATTCTTCAGATAGAGAAAAAGAACAAAAATGCTTACTTCCTAATGTAACAGGTTATGG
CATATTACACAGCACCGGAATACTTTTATGCTAGCAATCTAGCAGAACTTACAATTCAGTTCGAAATAAAGATAAACTTC
TACACAGATAAACCCTAATAATATATCGCTACCACTTGTGCTGAACAAAGGGGGGTTT----------------------
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---------------------------------------------------------------TGGTGGCAACACAAACG
ATTGAAG-CGAGATGCAGTTGGAGCCCAGCCACACAATGCCCGCGTATAGGAATTAGGGGTCAATCGATAAACAAGTACA
AGAAGGGTGAACGAAGAGAGATGTGTACGGGTGCCCTGGAGGCCGTAGCAGGCGGAGTCCGGAAGGCGGATGAAGTGGCC
GGAGATGGCGCCAGAGGGCAGCAGCGCTATGGACGCGACGCCCTCCATCTTCTCGCCAGTATCTCCCTCCTCGACTTGCG
CCCCAGCATCCTCCGCCTCCGCCGGCGGCGGCTGACGGTCGCCATTCGCCTGCGAGTCCGACAGAGAGCCCATCGTTCAC
ACCTCGCCCAAGAGCCGAGTGCGCCTCCTAGGAGCGAAAGCGGAAACCAACGGATGTTTTGCACATAA-CCCCGCCAACT
GCAGTTTTCTTTGCCGCAGGTCCCCGAGGCTTTACTAGGACAAGGGGTATCTACGG-AATAAGCTTCATAGTAAAGGGTG
CATTTGCGAATCTACCATAGCAAGCAAACCTCGACTTGTGCTACCTGCTACGCGGCTCTCCCAAAATCCCCAAAGCCCTC
GTCCCCCAAAGCCAGATTTCTTCTCCAGCCTT-CATCGCGCGAGAGGCG---TCCATGGCGGCGGCGGGCCCAGCCAAAA
CGGAGGTGCTGTCCCTCTTCCGCGCCTTCCTCCGCACGGCGAGGCAGTTCTCCGACTACAACATCCGCGAGTACACGCGG
CGCCGCGCGGCGGACGCCTTCCGCGAGAACCGCGCCCTCGCCGACGCGCCGGCCGCGGCGGCGGCCTTCGCGGACGGGAA
GCAGCAGCTGGAGGTGGCCAAGAGGCAAGTGCTGGTGTACTCTCTGTACGCGCCCAAGGCCAAGAGCGTTGTGGAGATGA
AGATTCAGTGAGCGACACCAGAGAGAGGTTTCACGCCCGCCATCTCCTCCTTTTCCTCCTTTCGGGTCTGTGCTCTTTTA
TGTACTGTCATAGTAGGGTTACGTC---GATCTGATGCTAATAGAATTT-TGCCATTACTATGTTTGCTGGATAATTGCC
CTGATACGGTGGTTGCTATTGTTCAATAAGTTCGCAAATTAATGATCATGATACTATGTGTTTCGCATACCGATTTTACA
TGTGAAATTAACTACCTGATTGTGGCTTTAGAATTATCGTATAGTCTTGCCCTGGTGTTCTTGCAGTGGTGCTACCTTTG
GCTATTACTACATCCCAGTAGCATTCGTGCGCTACTCCATACTTGTCTTGCTGACCATGATCAAATGTGTGGAAGAATTA
TTAAGGGTGTATTGAAGTCAATCGTGTTACCCATCAACTGTTTGACGAAATGTTGAAAGCGCGCATCCTCAGTTACAAGG
CCAAA-CCAGATCAGGTTTTGCACGACATAAGTTGTTGTGAGAAATGAAATAGACTGGCTATGCACCGAGTAGTATTTAC
CAGAATGTCCTGATCCGTTCAAGAAAAGGATAACATTGCAAGGCACGAGTCATAATGTATACAACTTATTACTTATTAGT
---TCAATAACACAAACTGCATATGGCAAATAGCCATTAATAAAACTACAAAAGAAAAATCATGGATCTATTCTTGGCTA
GCTGAAGA------------------------------------------------------------------------
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-----------------------------------------------CAAGCAAGGTACTATAAAACTTAGTATCGAAAT
CAGAGGAGGTCTTCTCATACTGTCACAATATGGTGAAGCA--------TTGCCACACTGAGACTATATGGGGTAAATATG
AATCTTACTAAGAATGCGGAGAGCACACATTGAAGCATTCTGTATTGATTTAATGGTTGCTTCTTGCTTGCCAATCAGGA
TGCCAGCTTGGGAAGCTGGCACAAGTAGCTGTGTTGGCCCTGCAGGACCAGCACCTTGCTGAGGCTGGTGGTTTCAGTGT
CTAAACCATCTGTTATTCTTTTATGT
>chr4D_1
TACATGATACAAAAGAAAAGGAACACGGCAATATAAGCTAAAGTTATCTTCTCTTCTGTGTAATAAATAGTAAAGAGTAA
ACACAAATATGGTGCACAGTTGCAAAAGACAATGGAAGCCAAGTAGAAGCACAGAAATTCAC--TTGTATAATTAAGAAC
AATATCATATCAACTATGCATCATTCTTCAGATAGAG-AAAAGAACAAAAATACCGACTTCCTAATGTAACAGGTTATGG
CATATTACACTGCACTGGAATACTGTTATGCTAGAAATCTAGCAGAACTCAGAATTCACTTCGAAATAAAGACAAACTTC
TACACAGATAAACCCTAATAATATATCGTTATCACTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGGCAACACAAACG
ATTGAAG-CGAGATGCGGTTGGAGCCCAGCCACACAATGCCCGCGTATAGAAATTAGGGGTCAATCGATAAACAAGTACA
AGAAGGGTGAACGAAGAGAGTTGTGTACGGGTGCCCTGGAGGCCGTAGCAGGCGGAGTCCGGGAGGCGGATGAAGTGGCC
GGAGATGGCGCCAGAGGGCAGCAGCGCGATGGACGCGACGCCCTCCATCTTCTGGCCGGTATCTCCCTCCTCGACCTGCG
CCCCAGCATCCTCCGCCTCCGCCGGCGGCGGCTGACGGTCGCCATTCGCCTGCGAGTCCGACAGAGAGCCCATTGTTCAC
ACCGCGCCAAAGAGCGGAGTACGCCGCCTAGGAGCCAAAGCGGAAAATAACTGATGTTTCGCACATAACCCCCTCCAACC
GTAGATTTCTTCGGAGAAGATCC---AGGCTTTACTGGGCTAAGGGGTATAGTACACAATAAGCTTCATAGAAAGGGGTG
TATTTGCTAATTTACCAT----AGCAAACATCGACTTGT-------GCTACGCGGCTCTCCCAAAATCCCCAAAGCCCTC
GTTCCCCAAAGCCAGATTTCTTCTCCAGCCTTTCATCGCACGAAA---GGCATCAATGGCGGCGGCGGGCCCAGCCAAGA
CGGAGGTGCTGTCCCTCTTCCGCGCCTTCCTCCGCACGGCGAGGCAGTTCTCCGACTACAACATCCGCGAGTACACGCGG
CGCCGCGCGGCGGACGCCTTCCGCGAGAACCGCGCCCTCGCCGACGCGCCGGCCGCGGCGGCGGCTTTCGCGGACGGGAA
GCAGCAGCTGGAGGTGGCCAAGCGGCAAGTGCTGGTGTACTCTCTGTACGCGCCCAAGGCCAAGAGCGTTGTGGAGATGA
AGATTCAGTGAGCGACACCAGGGAGAGGTTTCACGCCCGCCATCTCCTCCTTTTTCCCCTTTCGGGTCTGGGCTCTTTTA
TGTACTGT--TAGTAGGGTTATTATGGAGATCTGACGCTGATAGAAATTCTGCCGTTACTATGTTTGCTGGATAATTGCC
ATGATACGGTGGTTGCTATTGTTCAATAAGTTCGCAAATTAATGATCATGATACTATGCGTTTCGCGTACCGGTTTTACA
TGTGA----AACTACCTGATTGTGGCTTTAGAACTATCGTATAGCCTTGCCCTGGTGTTCTTGCAGCGTTGCTATCTTTG
GCTATTACTACATCCCACTAGCATTTGTGCGCTACTCCATACTTGTCGTGCTGGCCATGATCAAATGTGTGGAAGAAATA
TTAAGGGTGTATTGAAGCCAATCGTGTTACCCATCAACTGTTTGATGAAATGTTGAAATCGCGCATCCTCGGTTACAAGG
CCAAAACCAGATCAGGTTTTGCACAACATAAGTTGTTGTGAGAAATGAAATAGACTGGCTATGCACCGAGTAGTGTTTAC
CAGAATGTCCTGATCCGTACAAGACAAGGATAACAATGCAAGACACGAGTCATAATGTATACAACTTATTACTTATTACT
AGGTCAATAACACAAGCTGCATATGGCAAATAGCCATTAATACAACTACACAAGAAAAATCATGGATCTATTCTTGGCTA
GCT-AAGA------------------------------------------------------------------------
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-----------------------------------------------CAAGCAAGGTACTATAAAACTTAGTATCGAAAG
CAGAGGAGGTCTTCTCATACTGTCACAATATGGTGAAGCATTGCGCCATTGCCACACTGAGACTATACGGGGTAAATATG
AATCTTACTAAGAATGCGGAGAGCACACATTGAAGCATTCTGTATTGATTTAATGGTTGCTTCTTGCTTGCCGATAAGGA
TGCCAGCTTGGGAAGCTGGCACAAGTAGCTGTGTTGGCCCTGCAGGACCAGCACCTTGCTGAGGCTGGTGGTTTCAGTGT
CTAAACCATCTGTTATTCTTTTATGT
>chr4A_1
TACATGATAGAAAAGAAAAAGGACACGGCAATATAAGCTAAAGATATCTTCTCTTATCTGTAATAAAGACAAAAGAGTAA
AGACAAAGATGTCCACAA-TTGCAAAAGACAATGGACGGCGAATAGAAGCACATAAATTCATCTTTGTACAATCAAGAAC
-ATACCATATCAACTATGCATCATTCTTCAGATAGCAC--AAGATCAAAAATACCGACTCCCTAATGTAACAGGCTATGG
CATATTACACAGCACTGGAATACTGTTATGCTAGCAATCTAGCAGAACTCACAATTCAGTTGGAAATAAAGATAAACTTC
TAGACAGATAAGCCCTAATAATATATTGCTATCACTTGTGCTGAACAAAGGGGGGTTT----------------------
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---------------------------------------------------------------TGGTGGCAACACAAACG
ATTCAAGCCGAGATGCAGTTGGAGCCCAGCCACACAATGCCCGCGTCTAGAAATTAGGGGTCAATAGATAAACAAGTAGT
ACAAGGGTGAATGAAGAGAGATGTGTACGGGTGCCCTGGAGGCCGTAGCAGGCGGAGTCCGGGAGGCGGATGAAGTGGCC
GGAGATGGCGCCAGAGGGCAGCAGCGCGATGGATGCGACGCCCTCCATCTTCTCGCCGGTATCTCCCTCCTCGACCTGCG
GCCCGGCATCCTCCGCCTCCGCCGGCGGCGGCTGACGGTCGCCATTCGCCTGCGAGTCCGACAGAGAGCCCATCGTTCAC
ACCGCGCCCAAGAGCC-AGTACGCCGACTAGGAGCGAAAGCGGAAAGTAGTGGCTTTTATGCACATAACCCCCGCCAACC
GTAATTTTCTTCGGCTCAGATCCCTGAGGCCTTGCGGGGCTAAGGGGTATCGTTCACAATAAGCTTCAGAGAAA-GGGTG
TATTTGCTAATTTACCAT----AGCAAACATCGACTTGT-------GCTACGCGGCTCTCCCAAAATCCCCAAAGCCCTC
GTCCCCCGAAGCCAGATTTCTTCTCCAGCCTT-CATCGCACGAGAGGCGGCATCCATGGCGGCGGCGGGCCCAGCCAAGA
CGGAGGTGCTGTCCCTCTTCCGCGCCTTCCTCCGCACGGCGAGGCAGTTCTCCGACTACAACATCCGCGAGTACACGCGG
CGCCGCGCGGCGGACGCCTTCCGCGAGAACCGCGCCCTCGCCGACGCGCCGGCCGCGGCGGCGGCCTTCGCGGACGGGAA
GCAGCAGCTGGAGGTGGCCAAGAGGCAGGTGCTGGTCTACTCTCTGTACGCGCCCAAGGCCAAGAGCGTTGTGGAGATGA
AGATTCAGTGAGCGACACCAGAGAGAGGTTTCACGCA---------CTCCTTTTTCCCCTTTAGGGTCTGTGCTCTTTTA
TGTACTGT--TAGTAGGGTTATGGC---GATCTGACGCTGATAGAAATTCTGCCGTTACTATGTTTGCTGGATAATTGCC
ATGATACGGTGGTTGCTATTGTTCAATAAGTTCGCAAATTAATGATCATGATACTTTGTGTTTCACATGCCAATTGCACA
TGTAG----AACTACCTGATTGTGGCTTTAGAATTATCGTATAGCCTTGCCTTGGTGTTCTTGCAGCGGTGCTAGTTTTG
GCTATTACTACATCCCACTAGCATTTGTGCCCTACTCCATACTTGTCGTGCTGACCATGATCAAATGTGTGGAAGAATTA
TTAAGGGTGTATTGAAGTCAATCGTGTTACCCATCAACTGTTTGATGAAATGTTAAAATCATGCATCCTCGGTTACAAAG
CCAAAACCAGATCAGGTTTTGCTCGACATAAGTTGTTGTGAGAAATGAAATTGACTGGCTATGCACCGAGTAGTGTTTAC
CAGAATGCCCTGATCCGTACAAGAAAAGGATACCAATGCAAGACACGAGTCATAATGTATACAACTTATTACT---TACT
AGTTCGATAACACAGACTGCATATGGCAAATAGCCAGTAATAAAACTACAAAAGAAAAATCATGGATCTATTCTTGGCTA
GCTGATGACAAGCAAGCAGTGGCGAATCTAGCAGGACATTGGAGGGTAGGCTTAAAACATAGATTTCCTAAGTCTAATTA
GCGAATGCATTGCAATTGTTGCATGTAAAGCACCAGAATATATTTGTCAAGTGGTATGTTTAGCTTAAATAGGATTCTGG
AGGGTAGGCTTAAGCCTATTGAAACCTCCCTAGTGGAATCGCCACTGCAAGCAAGGTACTATAAAATTTAGTATCGAAAG
CAGAGGCCTTCTCA--ATACTGTCACAATATGGTGAAGCATTGCCACATTGAGAC-----------------TAAATATG
AATCTTACTAAGAATGCGGAGAGCACACATTGAAGCATTCTGTATTGATTTAATGGCTGCTTCTTGCTTGCCGGTCAGGA
TGCCGGCTTGGGAAGCTGGCATAAGTAGCTGTGTTGGCCCTGCAGGACCAGCACCTTGCTGAGGTTAGTGGTTTCAGTGT
CTAAACCATCTGTTATTCTTTTATGT
>SNPs
---------------S-------SSS--------------------S---------------------------------
--------------------------------S---------------S-------------------------------
---------------S---------------------S--------------S-SS------------------------
---------------S--------S------------------------S------------------------------
-------------------------------S------------------------------------------------
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--------------------------------------------------S-----------------------------
--------------------------------------------------------------S-----------------
---------------------------S-----------------------------S-----------------S----
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---S----------------S----S--------------------SS-------------------------------S
-S---------S-S-----S----S-----------S--SS----------SSSSS---------------S--S-----
S------S---S------SSSS-------S---------SSSSSSS----------------------------------
---------------------------------------S--------------------------------------S-
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------------------------------------------------------S-S-----------------------
--------SS-----------S-S-----------S---S------S-------S-------------------------
S-------------------------------------------------------------------------------
-----SSSS-----------------------------------S---------------------S-------S-----
-----------------S-------S---------------------S--------------------------------
---------------------------------------------S------------S-----------S---------
--------------------------------------------------------------------------S-----
------------------S----------------S------S-----------------------------------S-
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-------------------------------------------------------------------------------S
-------------------------------------------------------------------S------------
------------------------------------------------------------------------S-------
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>forward_1082
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----------------------AGCAAACCTCGACTTGTGCT--------------------------------------
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>reverse_2553
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------------------------------------------------------------------------AATCAGGA
TGCCAGCTTGGG--------------------------------------------------------------------
--------------------------
