>input_sequence_85204
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---------------------------------------------------------------------ATGTCTCATAC
TTGTATGCTTTACTTCGAAGCCCACCAACACCATGCCAAATTTCAGGACAACCATGCCAGTGTTATGAGGAAAGAAGAAG
CAGCAGTAGGAGCAAAGCATGTTGAAGCCAACAAAAAACAAGTCAAATTTCAGGACAGCCATGCCAATGATATCAAGATA
GATGATGTGAGTAAGGATGTGGATACAGTGGCTTTGGACTTCATCAACCGTAAGCACACGTCCTGGGCACTCCAGAAGAG
CACAACCATGTATCCAGCTTCCTAA-------------------------------------------------------
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>chr3A_1_TraesCS3A01G526100
TGTGCACCATTGGGAAAAAGTAATTCCTTCAAATCAGTTCAATAGGAAATAAAATACACGCCCTTTCGGAATAAAGAAAA
TCAAGTTAATATTTCCAATTGTTTGATGGATGCATGGACTAAATATAGTAACAATTTTGCAGCTCAGAGGAACTGTGGAC
AAGGATGAAATTTAACTATAGTGAAGACTGGACTTTCAGCTCCCGGGTGCAGGGGCACCCTAATGAACAGTAAATGAAAA
ACAATATGAAAAAAAATAGAAAAATTCTGAAACTTTGGGGGATCAAATATGATCAAACATTCGATGTTCATGCAAAGTTT
TAGCATCAAAAAACATTCATGGAGCCTTCACAAAAAAATCAGTGTTCAAAGTTATGTGTAGTTTTGAGCAGTAATTTCTG
CTCGAGTGTTATTTCTGGCTTAAAATTTGCAAGAACATCAAAATTTTGATCATATTTGATCCCCCAAAATTTCAGATTTT
TTTAATCTTTTTTTCATATTGTTTTCAAGTTATACAGGATATTGAAATCAGCACAGTTATAGAAGCCAGATAACCTTATT
GGCACTTTTTCTGCTAATCAGAATTAACCAAAAGTGTAG--AATATACAAGTCTCGTAACTGT-------TCCATGCCAG
AATATGAATGAAGATAGTGCTTATCTTTTATCAGCGGTA-GGGGAAAACAACCCAACGCTCCCAACTAAAAAGAAGAGAA
GAAACTGCAGAAGGAACTAATCTTAGGTCCAATATAAGTTAGAACCTT-----GCC--AAATAACTTCGAAGATAAACAT
GGATCCATTCAGTGCCTAACAATTTTGAATGAAGAATGCTAAGATGAAAGATTCG-----------CTCAAAATTGTCAA
AAGT-GAGAATATGATACCCACTTGCCGCTTAAGAATAAGCATCCTCATTGGCCTATAAAAGAGGACAAGAAAACATCAC
ACTTGCTGCAAACCAATTCCTACCCTTCCAGCATTTCCTCGTAGCTCTTAAGCAAGGAGCCATAGACCAATGTCTCATAC
TTGTATGCTTTACTTCGAAGCCCACCAACACCATGCCAAATTTCAGGACAACCATGCCAGTGTTATGAGGAAAGAAGAAG
CAGCAGTAGGAGCAAAGCATGTTGAAGCCAACAAAAAACAAGTCAAATTTCAGGACAGCCATGCCAATGATATCAAGATA
GATGATGTGAGTAAGGATGTGGATACAGTGGCTTTGGACTTCATCAACCGTAAGCACACGTCCTGGGCACTCCAGAAGAG
CACAACCATGTATCCAGCTTCCTAAGTGCACCAGGGTTGCTTAGTCATGGTACTATCTGCTCATGCTTTGTCCAGTATGA
AAGTTAGAATAAGAGGTGATGCTTGGAGGTAACCTAAATATTCCGAAGTAGTGGTACTATCTACTA-TGGTGTTGTTACT
TGCAATATCAATAGAAGTGAAGTGAA-TATGTTGTACTGTTATTGGCAATACCGATGCATAGCATTCTTATATATGAATG
TCAGGTTATTACAATGATGCCGTTCAATTTGTCAAGGGATACACATTCTGTGGCATAGTGGTCTTTCATTGACCATGAAT
TTAAGTGGGGCAAACGATAGACTCCCATGACGGAGAATTTGTCACAAACTTCCCCTATGATGGAAACACTGATGCCAACC
TACACTGTCTTGCCTTAAAAAATTCAACAATATCCCTTACAATTCCACCACAGTACTGCTCCCTCCGTTTCTAAATATAA
GCCCTTTTCGATATTTCCATAGGAACTACATACGGATGTATATAGGCGTACTTTAGAGTGTACACTCATTTTACTCCATA
TCTAGTCCATATTGAAATCTCTGGAGGCCTATTTTTAGGAATGGTGGGAGTAGATTATAGCAGCTTATAACATATAAAAA
TATTATGCTGATAGGATAAATTTGACAAGAAGGCTGCAGTAAAAAATGAGACCTTTTACAGTACATCAGATCAATATTGG
CCGTTTATTTTTGTGTTTGGACGGCTCAGATTTGAAAATACTACTGCAGATTTTCGGTAGTATATTTTGTGATCAGGGGC
AGTTTCGGTACTGTTAGCAAAAACGTGGGCTGGCTCCCTAAAAAAACGAGTGACCGGCATTGCGGAATTTCGACTATCCA
TTCACCATCACCACCATACGCACCCCCGCGGCCCATCCTCTTAATGGACACAGCGGATACCTCGAAAAAGAAATACGACC
ACTAGTGGCGCTAGGGCGAGAGGACGACGGCAGCCTCTAGTCGCCGTGACAGCTCTCCACACAGTCT
>chr3D_1
TGTGCGCCTTTGGGAAAAAGTAACGCCTTGAAAGCAGTTCAATAGCAATTCTAATACGTGCCCTTTTAGAATAAAGAAAA
TCAAGTTAATATTTCCAGTTGTTTGATGCATGCATGGACTAAATATAG--------------------------------
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------------------------------------------TGAAATCAGCAAAGTTATTGAAGCCAGATGACCTGCTT
GGCACTTGTTTTGTTAATCACAATTAACCAAAAGTGTATATAATATACAAGTGTCGTAACTGTTTAATGTTCCATGCTAG
AATATGAC-------AGTGCTTATCTTTTATCAGCGGAA-GGGGAAACCAACCCAATGCTTCCTACTAAAAAGAAGAGAA
GAAACTGCAGAAGGAACTAATCTTAGGTCCATTATAAGTTAGAACCGTAGCTAGCC--AAACTACATAGAAGATAAAGAT
TGATTCATTCAGCGCCGAAGAATTTTGAATGAAGAAAGCTAACAAGAAAGATTCG-----------CTCAAAATAGTCAA
AAGT-GAGAATATGATACCCACTCGCCGCTCAAGAATAAGCATCCTCATTGGCCTATAAAAGAGGACAAGAAATAATCAC
A---GCTGCAAACCAATTCCTACCATTCCAGCATTTCGTCGTAGCTATTAAGCAAGGAGCCACATACCAATGTCTCATAC
TTGTATGCTTTACTTCGAAGCCCACCAACACCACGCCAAATTTCAGGACAACCATGCCAGTGTTATGAAGAAAGAAGAAG
CAGCAGTAGGAGCAAAGCATGTTCAAGCCCACAAAAAACAAGTCAAATTTCAGGACAACCATGCCAATGATATCAACATA
GATGATGTGAGTAAGGATGTGGATACAGTGGCTTTGGACTTCATCAACCGTAAGCACACGTCCTGGGCACTCCAGAAGAG
CACAACCATGTATCCAGCTTCTTAAGCGCACCATGGTTGCTTAGTCATGGTACTATCTGCTCATGCTTTGTCCACTATGA
AAGTTAGAATAAGAGGTGATGCTTGGCGGTAACCTAAATATTCCTAAGTAGTGGTACTATCTACTA-TGGTGTTGTTACT
TGCAATATAAATAGAAGCGAAGTGAA-TATGTTGTACTGTTATTTGCAACATCGATGTATGGTGTTCTTATATATGAATG
TCAGGTTATTACAATGATGCTGTTCAACTTGTGAAAGGATACACATTCCATGGCATAATGGTCTTTCATTGACAATGAAT
TTAAGTTGGGCAAACGATGGACTCCCTTGACGGACAATTTGTCACAAACATCCCCTAAGATGGAAACACTGATGCCAACC
TACACTGTCTTGCCTTAAAAAATTCAACAAAATCCATTACAATTCCACCTCAGTACCACTCCCTCTGTTTCTAAATATAA
GCCCTTTTAGAGATTTCAATAGGAACTACGTACGGATGTATATAGGCATACTTTAGAGTGTACACTCATTTTACTCCATA
TGTAGTCCATATTGAAGTCTCTGAAGGCTTATATTTAGGAGCGGCGAGAGTAGATTATAGCAGCTTAAAAA---------
-ATCATGCCGATAGGATAAATTTGACATGACGGCTGCAGTA---------------------------------------
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>chr3D_584
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-----------------------TTAACAAAAAGTGTAA--AATATATAATCTCCTTAACTGG-------TTCATGCCAG
CATATGAAAGAAGATATTACTTATCTTTATGAGCGGAAGTGGAAAAACAACTCAACTGCGTCCTATGAAAAAAG------
--AACTGCAGAAGGAACTTAACTTAGGTCCACGCTAAGCGAGAAGCCCTAGCAAGCAAAATTACTTTACAAGATAAACAT
GGAGTCATTCAACGCCTAACAAATTTGAATGAAGAAAGCTAACAAGAAAGAGAACACGAAAAATATCTCAACATTGTCAG
CAGTGGAGAATATGATGCCCACTTGCCGTCTATGAATAAGCATCCTTATGGGCCTATAAAAGAGGACAAGAGCACATCAC
A---GCAACAAACCAGTTCCTACCCTTCCAGCATTTCCTCGTACCCCC-AAGCAAGGAGCCATAGAGCAATGTCGCACAC
TCGTATGCTCTACTTCCAAGCCCACCATCCCCATGCCAACTTTCAGGACAACCATGCCAGTGTTATGAAGAAAGAAG---
CAGCAGTAGGGGCGAACCATGTCCAAGCGCCCAAAAAACAAGTCAGGTTTCAGGACAACCATGCCAATCCTATCAAGAAA
GATGATGTGAATACAGATGTGGATTCGGTGGCTTCGGACTTCATCAAGCGTAAGCACATGTCTTGGGCACTCCAGAAGAG
CACGACCATGTATCCATCTTCTTAAGAGAACCAGAGTTCCTTAGTCATGGTATTATCTGCTCATGCTTTCTCCAGTATGA
AAGTTCAAATAAGAGGTGCTGCTTGGAAGTGCCCTGGATATCCCGAGGTTGTGTTACTATGGTGTATTGGTGTTCTTATT
TGTAACATGAATAAGAGCGATGTGAA-TAGA-TGTACTGTTATT-----CACCGCTGTGTGATATTCTTATATATGAAAG
CGTGGTTATTACAGTGATTCTGTTCGACTTGT------------------------------------------------
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>chr3B_628
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----------------------------------------------------------------------------CCAG
CATATGAAAGAAGATATTACTTATCTTTATGAGCGGAAGTGGGAAAACAACTCAACTGCGTCCTATGAAAAAAG------
--AACTGCAGAAGGAACATAACTTAGGTCCACGCTAAGCGAGAAGCCCTAGCAAGCAAAATTACTTTACAAGATAAAGAT
GGAGTCATTCAACGCCTAACAAATTTGAATGAAGAAAGCTAACAAGAAAGAGAACACGAAAAATATCTCAAAATTGTCAG
CAGTGGAGAATATGATGCCCACTTGCCGTCTAAGAATAAGCATCCTTATGGGCCTATAAAAGAGGACAAGAGC-AATCAC
A---GCAACAAACCAGTTCCTACCCTTCCAGCATTTCCTCGTACCCCC-ACGCAAGGAGCCACAGAGCAATGTCGCACAC
TCGAATGCTCTACTTTCAAGCCCACCATCCCCATGCCAACTTTCAGGACAACCATGCCAGTGTTATGAAGAAAGAAG---
CAGCAGTAGGAGCGAACCATGTCCAAGCGCCCAAGAAACAAGTCAGGTTTCAGGACAACCATGCCAATCCTATCAAGAAA
GATGACGTGAACACAGATGTGGATTCGGTGGCTTCGGACTTCATCAAGCGTAAGCACATGTCTTGGGCACTCCAGAAGAG
CACAACCATGTATCCATCTTCTTAAGAGAACCAAGGTTCCTTAGTCATGGTATTATCTGTTCATGCTCTGCCCAGCATGA
AAGTTCAAATAAGAGGTGCTGCTTGGAGGTGCCCTGGATGTCTCGAGGTTGTGTTAT-------TG-TGGTGTTCTTATT
TGTAACATGAATAAGAGTGATGTGAAATAGGCTGTACTGTTATT------------------------------------
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>SNPs
-----S--S--------------SS----S---S-----------S--S-SS-----SS-------SS------------
-----------------S----------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S------S----------S----SS--
-------S--S--S------S-----------------S-------------S---------------------------
--------S----------------------------S---------S--------S---S--S----------------
-------------------------------S--------------S--------------------S------------
----S-------S-----------------------S-----S-S-----------------------------------
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-SSS----------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
-----------------------S-----S---------------------------S----------------------
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---------------------S----S-----------------------------------------------------
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--------S-----------------------------------S----S-------S--S-S-----------------
--------------------S------S----S--S------------SS-------S---------------S------
------S-----------S-------S-------S--------------S-------S----------------------
------------------------------S----S-------------S------SS-------S--------------
--------S--S-----S-----------S-----------------S--------------------------------
-S--------------S------S----S---S-------SS--S-S--------------------S--SSSSSSSSSS
S--S----S------------------S--S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_701
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-----------------------------------------GGGAAAACAACCCAACGCTC-------------------
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>reverse_2162
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-TCACCATCACCACCATACGC-----------------------------------------------------------
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