>input_sequence_85142
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-----------------------------------------------------------------------ATGAGGGCG
GTGAGCGGCGAGGTGGTCTCGTCGAAGCCGGTGGGCTTACACAAGGCCGCCCGCGTGTTCAGACGCTTCGCGGCCAGAGA
GGCGTCAAGGCTGCCCGCCGGGGCGGGCGTGCTGGTCCTCTGCGCGGCCGAGGCCGCCGCCGAGCTCCACGCCTTCCGCT
GCGCCCGCGTGGGCCCCGATGGCGAGGCGGAGGTGGATGCGGCACCAAGCGGAGAGGAGCGGCGCAAGAAGAGGAGGAAG
ACTGGGCGCGAAGGTGTGTCACTAGAGTAG--------------------------------------------------
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>chr5A_1_TraesCS5A01G525800
TCAAATTAATCCGTCAATGATAATCATAAACCAGACAGATCAGCCAGGAATACCAACACGGGAGGCGCAATTCGTCGACA
GATCAGCCAGGAATACCAACACGGGAGGCGCACTTCGTCGACAGATCAACGCAACCACCACATCCTAGGCAGAAACTAAT
GGGAACGACGCAGTAAA-TTCAGAGAAGCGGTCAGAACAGGGGGTCAGTGGAG--GGGTAGGGTTTTCTCACCCTGTAGC
CGTTGAGTTCGGTCTCGAGCTTCTCCTTGCGCTGCTCGGCGCGGCGGTTGACGGAGTCGACCCAGGCCTGGTCGTGGCGG
TAGCGCGGGCCGAGGCGGCCGTTGATCTTGAGGACGGCGTCGAGGTAGAGCACGGTGTCCTCGCGCGCCCTGGCCTCGTC
GTGCGCCATCCGCAGCGCCTCGAGCTGGATCGCCTCCACCCCGCACCGCTCCGCGATGAAGAGGAGCCGCGCCACGCGGG
TCCGGCCCGAGTACTGCGCCGCGTACGCCTCCACGTCGAGCTGGTCGGCGGAGACCGGC---GCCGCGGAGGGCTGACCC
TCGCCGCCCAGCCCGTTCGTCACCGCCGCGGCCGCGGCCGCCGAGACCTCGCAGTCCACGTCCATGCTGC---CGGGGAT
CGGCGGTGGGGTTCGCCGCAAAACCCTAGAGAGAGAGGGGGGAGGCGGAAGCTTCCGGAGAGGAGAGATGCAGAGGAGGG
GAAAAGACGGAGGGCCTGGGTTGGAAATAGCACGGGTGGTGCGGGCAGATATGTAAAGTTACGTTGGGCCGGGCATGGGT
TTTGTTCTCAACTTGGGCTGGAATGAACGCCCCTTTCTGGGTCATGTGCTTTGGCCCAATGATTCGTATGGGCTAACAGG
CCGAAATACCCTCTTTATATGTATGTTATGGTG----------GGCTGGTGGCGTGCTGTG---TTCACTTTTTAGGTCC
AAAGAAGATTCCGACGAGCGAGGAGGTCCAGCACTCGAGCGGCGGCG---------GCGGCGACGGCGGAGATGAGGGCG
GTGAGCGGCGAGGTGGTCTCGTCGAAGCCGGTGGGCTTACACAAGGCCGCCCGCGTGTTCAGACGCTTCGCGGCCAGAGA
GGCGTCAAGGCTGCCCGCCGGGGCGGGCGTGCTGGTCCTCTGCGCGGCCGAGGCCGCCGCCGAGCTCCACGCCTTCCGCT
GCGCCCGCGTGGGCCCCGATGGCGAGGCGGAGGTGGATGCGGCACCAAGCGGAGAGGAGCGGCGCAAGAAGAGGAGGAAG
ACTGGGCGCGAAGGTGTGTCACTAGAGTAGGCTCTCTTTTTTGGGGGGTTTAAATCCATGTGTTACTGTGGTACTGGTAG
CTTGCCTGTTGTTCTTCATGCTGTTAAATCCATTTGTTACTGTGGTAGCGACTAGTAATAATATATCTGGTGTTGTTCAC
GATGTATCATTTCATCATTTGGGACGAGCTGTGCTGTGTCTTGTGTGTGATGTATGTATCCTGCTGCCGGGGCTACATTT
TA------------------------------------------TTTCAGTGCAATCGGCTGAAAACTTTCACCGCCACT
CCAAGAGAGACAGAGAAGACTGCAGCACCACACACAATGCACCTGAAGGAAAGACGTCTGATGAGCTTGTGTGTTGTGCT
CTTCAGTCCATTACTGCATCCCCTGTTGTCCTTGAACTGTTTTTTT---AAGAGAAACTTGGAACTGTT--TTAGTTGGA
CGTTGAGCATTTTAGTTTTGCTTTTTAACCACAACCGAACTCTGTAGTA-------------------------------
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-----------------------------------------AGGTGCCATTGTCTCTTGTCTGTCGGTGGAGCCTCCCTG
ATTTTCCAAAACGAACAAAATTGTCGCTGTTAATTTGGTTCTGAAGTCTGAACTCGTGTGCGTTGGAATTTCAGTGTCTG
ATTTCTCTCTCGGGGCCTTGAGAAAGAGACGGATACTTGTGTTGTTTTAGCACCTTTCAGCTC-AGCTAGAACGTTACTC
AAGCTGCT-----GGATCCCATTGGCTCAGACATTGGTGAGAGTGAGTACACAAGTTATTGCCGACTCGCCGGCACCTCT
GCTTCACCTGGCCGTGGCCGGCAAGTAAATCCCCAGGCAAATACGCAATAACATCTCATCC-------AGTCAGCCGTCA
CGTTCCATGAAGATTGCCGAAGTCAGCCACACAATCCACACAGTCCAGGCAAATTCAGTGCAATCCGGTCCAGTCCAGCT
T------------CCCAACCTTAATTTTGTGCTTGTGCTATAACTCGTCTACATTGGCAGTTCTGCGTATCATGTACGTA
TCTC------------TTAGATTCCTTGAGAAGGAC--ATATGTATGTAACACCTTTCCACTGAGCTA
>chr4D_77
----------------------------------------------------------------------------GACA
GATCAGCCAGGAA-ACCAACACGGGAGG-CCAATTCCTTGACAGATCAAGGCAACCACCACATCCTAGGTCGAAACTAAT
GGGAACGAAGCAGTAAAATTCAGAGAAGCGGTCAGAACATGGGGTCAATGGGGGTGGGTAGGGTTTTCTGACCCTGTAGC
CGTTGAGTTCGGTCTCGAGCTTCTCCTTGCGCTGCTCGGCGCGGCGGTTGACGGAGTCGACCCAGGCCTGGTCGTGGCGG
TAGCGCGGGCCGAGGCGGCCGTTGATCTTGAGGACGGCGTCGAGGTAGAGCACGGTGTCCTCGCGCGCCCTGGCCTCGTC
GTGCGCCATCCGCAGCGCCTCGAGCTGGATCGCCTCCACCCCGCACCGCTCCGCGATGAAGAGGAGCCGCGCCACGCGGG
TCCGGCCCGAGTACTGCGCCGCGTACGCCTCCACGTCGAGCTGGTCGGCGGAGAC---CGGCGCCGCGGCGGCCTGCTCC
CCGCCGCCCAGCCCGTTCGTCACCGCCGCGGCCGCGGCCGCCGAGACCTCGCAGTCCACGTCCATGCTGC---CGGGGAT
CGGCGGTGGGGTTCGCCGCAAAACCCTAGAGAGAGACGGGGGAGGCGGAAGCTTCGGGAGAGGAGAGATGCCGAGGAGGG
GAAAAGACGGAGGGCCTGGGTTGGAAATAGCACGGGTGGTGCGGGCAGATATGTAAAGTTACGTTGGGCCGGGTATGGGT
TTTGTTCTCAACTTGGGCCCGAATGAACGCCCCTTTCTGGGTCATGTGCGTTGGCCCAATAATTCGTTTGGGCTAACAGG
CCGAAATAGCCTCTTATATCACTATGTTGAAATATGGTGGGCTGGCTGGTGGCGTGCTGTGCTCTACACGTTTTAGGTCC
AAGGT----------------------------CTCGAGCGGCGGCG---------GCGGCGGCGGCGGAGATGAGGGCG
GTGAACGGCGAGGTGGTCTCGTCGAAGCCGGTGGGCTTACACAAGGCCGCCCGCGTGTTCAGCCGCTTCGCGGCCAGAGA
GGCGTCAAGGCTGCCCGCCGGGGCGGGCGTGCTGGTCCTCTGCGCGGCCGAGGCCGCCGCCGAGCTCCACGCCTTCCGCT
GCGCCCGTGTGGATCCCGATGGCGAGGCTGAGACGGAGGTGGTGCAGGGCGGAGATGGGCGGCGCAAGAAGAGGAGGAAG
ACGGGGCGCGAAGGTGTGTTACTAGAGTAGGCTCTTTTGAAAAAAA-----AAATCCATGTGTTACTGTGCTAGCGACTA
GT---CTGTTGTTCTTGATGCTGTTAAATCCATTTGTTACTGTGGTAGCGACTAGTAATAATTTGTCTGGTGTTATTCAC
GATG--------CATCATTTGGGACGAGCTGTG-------TTGCGTGTGATGTATGTATCCTGCTGCTGGGTATACATTT
TA------------------------------------------TTTCAGTGCAATCGACTGAAA-CTTTCACTGCCACA
GAGCC-------------------------------ATGCACCTGGTGGAAAAGACGTC--TGAGCTTGTGTGCTGTGCT
CTTCAGTCCATGAGTCAATCCATTGTTGTCCTTGAACTGTTCTTTA---AAAAATAAGCTC-AACTCTT--TTAGTTGGA
TGTTTAGCTTTTCAGTTTTCCTTTTGAGCCACAACCCAACTCTGTATTATTGTTGTTGTTGGTTCTGTCCGCTGGAGTTT
TATCCTCTAGACAGTTTCGTCTGTGTCGTGTGGTGGTTGTAGTGTCGTCAGGTTTTCGCCCCACAGCTGATAGTCCGTTT
CAGGGTTGTCATGCAGTGGGTTTCCTGGCGATGCACCAACCCGCTACCCCCTTTCAGTCTCCTTTGCTTAGTAGTTGTCC
TATTTGGCTTGATGCCTAGCTTGCGATCTTCGAACGACGATACCTGACTGATGTATTTCCGTTGATTGCAAAATTAATGG
AAAGGGGTGTGAGCCCGGTTGGAAAAAAAAACTCTGTATTAAGGTTCCGTTG--TCTTGTCTGTCAGTGGAGCCTCCATG
ATTTTCCAAAACGAACAAAATTGTCGCTGTTAATTTGGTTCTGAGGTCTGAACTCGTGTGCGTTGGAACTTCACTCTCAG
AGCCTC-------------GAGAAAGAGACGGATACTTGTGTTGTTTTAACACCTTTCAGCCTGAGCTAGAACGTTACTC
AAGCTGC-----CGGATGCCATTGGCTCAGACATTAGTGAGAGTGAGTACACAAC-TATTGCCGACTCGCCCGCACCTCT
GCTTCACCTGGCCGTGGCCAGCAAGAAGATCCCAACGCAGATGTGCAATCACATCTCATCC-------AGTCAGCCGTCA
CGTTCCACGAAG----------TCAGCCACACAATCCACTAAATCCAGGCAAATTCGGTGCAATCCGGTCCAGTCCAGCT
TCAGTCTGCGCTGCCCAACCTTAATTTTGTGCTTGTGCTATAACTCGTCTGCATTGGCAGTTCCGCTCCGCGTACCATAT
CTCTCTTAGTCTTAGATTAGATCCCTTGAGAAAGGTATATATGTATGCAACACTTTTCAACTGAGCTA
>chr4B_77
----------------------------------------------------------------------------GACA
GATCAGCAAGGAATACCAACACGGTAGGCCCAATTCCTCGACGGATCAACGCAACCACCACATCCTAGGCAGAAACTAAT
GGGAACGATGCAGTAAA-TTCAGAGACGCGGTCAGAACAGGGGGTCAATGAAG--GGGCAGGGTTTTCTCACCCTGTAGC
CGTTGAGTTCGGTCTCGAGCTTCTCCTTGCGCTGCTCGGCGCGGCGGTTGACGGAGTCGACCCAGGCCTGGTCGTGGCGG
TAGCGCGGGCCGAGGCGGCCGTTGATCTTGAGGACGGCGTCGAGGTAGAGCACGGTGTCCTCGCGCGCCCTGGCCTCGTC
GTGCGCCATCCGCAGCGCCTCGAGCTGGATCGCCTCCACCCCGCACCGCTCCGCGATGAAGAGGAGCCGCGCCACGCGGG
TCCGGCCCGAGTACTGCGCCGCGTACGCCTCCACGTCGAGCTGGTCGGCGGAGACCGGCGGCGCCGCGGCGGCCTGCTCC
CCGCCGCCCAGCCCGTTCGTCACCGCCGCGGCCGCCGCCGCCGAGACCTCGCAGTCCACGTCCATGCTGCTGCCGGGGAT
CGGCGCTGGGGTTCGCCGCAAAACCCTAGAGAGAGACGGGGGAGGCGGAAGCTTCGGGAGAGGCGAGATGCCGAGGAGGG
GAAAAGACGGAGGGCCTGGGTTGGAAATAGCACGGGTGGTGCGGGCAGATATGTAAAGTTACGTTGGGCCGGGTA-----
-------------------------------------TGGGTCACGTGCGTTGGCCCAATAATTCTTATGGGCTAACAGG
CCGAAATAACCTCTTATAC-----------AATATGGTGGGCTGGCTGGTGGCGTGCTGTGCTCTACACTTTTTAGGTCC
AAGGT----------------------------CCCGGCGAGCGAGGAGGTCTCGAGCGGCGGCGGCGGAGATGAGGGCG
GTGAGCGGCGCGGTGGTCTCGTCGAAGCCGGTGGGCTTACGCAAGGCCGCGCGCGTGTTCAGCCGCTTCGCGGCCAGAGA
CGCGTCGGCGCTGCCCGCCGGCGCGGGCGCGCTGGTCCTCTGCGCGGCCGAGGCCGCCGCCGAGCTCCACGCCTTCCGCT
GCGCCCGCGTGGGTCCCGACGGCGAGGCTGAGGCGGAGGTGGCGCCGGGTGGCCAGGAGCGGCGCAAGAAGAGGAGGAAG
ACGGGGCGCGAAGGTGTGTCACTAGAGTAGGCTCTTTT--AAAAAA-----AAATCCATGTGTTACTGTGGTATCGATTA
GT---CTGTTGTTCTTGATGCTGTTAAATCCATTTGTTACTGTGGTAGCGACTAGTAATAATTTGTCTGCTGTTCTTCAC
CGTG--------TATCATTTGGGACGAGCTGCG-------TTGTA-----------TATCCTGCTGCTGGGGCTACATTT
CACTCCCTCCGTCTCATAATATAAGAACGTTTTTCACGCTAGTGTTTCAGTGCAATCGCTGAACT---------------
------------------------------------------------GAAAAGACGTC--TGAGCTTGTGTGCTCTGCT
CTTCAGCCCATGACTGAATCCCCTGCTGCCCTTGAACTGTTTTTTTTATAAGAGAAACTTGAACTGTTTTATTAGTTGGA
TGTTTAGCTTTTCAGTTTTCCTTTTGAGCCACAACCCAACTCCGTAGTA-------------------------------
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-----------------------------------------AGGTTCCGTTGTC---TGTCTGTCAGTGGAGCCTCGCTG
ATTTTCCAAAAGGAACAAAACTGTCGCTGTTGATTTGGTTCTGAGGTCTGAACTCGTGTGCGTTGGAACTTCAGCGTCTG
ATTTCTCTTTCG---------------GACGGATACTTGTGTTGTTTTAGCACCTTTCAGCTTTAGCTAGAACATTACTC
CAGCTGCTGGATCGGATCCCATTGGCTCAGACATCAC------------------TTATTGCCGACTCGCCGGCACCTCT
GCTTCACCTGGCCATGACCGGCAAGAAGATCCCAACGCAAACACGCAATCACATCTCATCCAGTCAGGAGTCAGCCGTCA
CGTTCCACGAAGATTACCGAAGTCAGACACACAATCCACTAAGTCCAGACAAATTTGGTGCAATCCGCTTCAGTCCAGCT
TC------------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
-----------------------------S--S---S-------------------------------------------
--------S--------------------------------------S--------------------------------
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---------------------------------------------------------------------S--S---SS--
S-------------------------------------------------------------------------------
------------------------------------S------------------S---------------S--------
-------------------------------------------------------------------------S------
------------------SS-----------------------------S----------S-------------------
--------S------SSSSSSSSSSS-SSSSSS--------------------------------S--------------
--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S-----------------
--------------------------------------------------------------S-----------------
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-------------S--------------S----S---S-S---S--SS--------------------------------
--S--------------------------------S--SSSSSSSSSSSSS----------------------SS-S-SS
S-SSS-----------S---------------------------------------------S-S---------S-----
----SSSSSSSS---------------------SSSSSSS---------------------------S------------
----------------------------------------------------------S------S-------S-----S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS-----SSSSSSSSS------------S------
-----------S----S--------------------------------------------S----S-------------
S---S---S---S------S-----S-S--------S-------------------------------------------
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---------------------------------------------S--S----------------S--------------
--------------------------------------------S-----------------------S-----------
--------S---SSSSSSS-------------------------------------------S-----------------
-----------------------------------S------------------S-------------------------
-------------------------S-S-----S-S-------------S------------------------------
-------S-------S-----------------------SS---------------S-----------------------
--------------------------------------------------S------------S--SSSS-S-SSSSSSS
SSSS------------------S---------S-SS-----------S-----S----S---------
>forward_61
-----------------------------------------AGCCAGGAATACCAACACGG-------------------
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>reverse_1626
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-------------------------CACCACACACAATGCACCTG-----------------------------------
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