>input_sequence_85139
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------------------------------------------------ATGGCGCCGCCCCAGGAGGGGGAGCAGTGCGG
GCGGCCGGCCAGCAGCGTGTTGATTTGGGTGGTGACGGTGCTGCTGCTCCTCGCCGTGCTCGGCGGCGGCGGGTGCCTCG
TGGCCTACGTCCTGCTGCCGCCGAGCGAGGCGCCCGGATGGATCCCCTGCGTCGGCCTGGGCCTCGTGGCGCTCCCCTGG
GCGTTCTGGCTCGCCACCGTCGCCTACCGGTGCATCACGGCGCGCTCGGCCGACCGCGCCGTGGCGCCCGCGGCCGCCG-
--GCAGCTAA----------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G100900
CGACAATTTGACACAGCATGCGTCAAATAAGATATTGATGCGGCCCGAGCGAACGAACGGTGCTAAGAAACCTGATTTCT
GGGCCAGTCCAAATGCACGGACGCCAGCGGTAAGACCTATTAGAAATCGGCACGAACAGTATATAGTTCCAACAGTGCCC
CTGATATAGGGGTTAGTTGAGCCCGAAACAAGTTCAAATGGACAAGTGAGTAAAACCAACAGTTTAGGGGCATAACTGGA
TTTTTTGGAAGAAGATTTTAATATGTCATCAATAAATTAAGGACCCCGATAAAATCCGAACGTTCGTATTTTAAGCATTT
CATCCCGAACGTTTTTACATGGCAACTTTAGTTGACGTGAGGTGGCAATTTTAGTTGTTAAGCCATGGCAACTTTGTTCC
AATTTGTTTTTTTGTCAGAAAATTGCAATGTTTACCAACCTCACGCGAACTAAAGTTGCCATGAAAAACGTTCGGGTCCC
CATGATTAAAATCCGAACGTTCAGGATTTATCATTGCCATAAATTAAATTATATTAAAGATATTTCAACAGCCATATTTT
TAATATAGCTATAAGCTACCCCTAGATCATTATAAATCTATTGTGCGTTTAATTCTAGAGAAAACAACATCACTGGTTTT
GCAGCATGTGAGAAAAGAAGAAGTAGCTTATTATAGAATGCACACTTAACTCGCCACCATTCTCTCTTGACCTCTCCCTC
CATTTTGGCCACCC-----TGGTTTGAGCGCTCCGCCATTCCCCCGTCGCTGCTCCTCTTGCATTCCTCGATCCACAAAA
GGGCAAACAGCATAACAGATCAGAACTTTTTTGGCACATTTTCTCTGTTCTTGGTCCACGAACAGGAAGGCAACAAGGTG
AGGATCGGAGGCCACACTGGCGATGCACGCCGCCCTCTTCTT---GCTCTCCTTGACCAGCGCCTCCGCGTCCGTCCTCG
CCGCCCTTGCGTCTTTCTGAGCTCCGGTCCACCGGCGACGATAGACCAATGGCGCCGCCCCAGGAGGGGGAGCAGTGCGG
GCGGCCGGCCAGCAGCGTGTTGATTTGGGTGGTGACGGTGCTGCTGCTCCTCGCCGTGCTCGGCGGCGGCGGGTGCCTCG
TGGCCTACGTCCTGCTGCCGCCGAGCGAGGCGCCCGGATGGATCCCCTGCGTCGGCCTGGGCCTCGTGGCGCTCCCCTGG
GCGTTCTGGCTCGCCACCGTCGCCTACCGGTGCATCACGGCGCGCTCGGCCGACCGCGCCGTGGCGCCCGCGGCCGCCG-
--GCAGCTAA--------------TTTCATTACTTAAGAGTAGGTAACCATTGTG-ATGTTAGTATCAAATCTGTTGTCA
GTGAGAAAAGCATTTAGCAAGGAG----AATCTGTGGGGATCGATTATGCATTGCAATGTTTGCATGGTTATGAAGTAAG
AAAGTTGGTTATCTGAAAAGTGTGCCATGGTTATATTTTGTCTTTTAACTCTT--TATGCTTTGCAGTGTGAAGCTGATT
GGAGATCAACACAATTGATGTGAGGATTATATCAACTAAATTCCACCGACTCCCGCAAATAAAAAATAAAAAAAAT--TC
GACCGAGTTTGGTTTAAATC-TTTCGATCAAAATCCGACGTGATGGTAGATGCAACCGTAATGGACCACAACATCTGAAC
AATTT--TTCATAATCATGAGACTAAACTGCACGTGTTGTTTAT--AA--------------------------------
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---------------------------------------------------------------TCATGTTTCGTGATTGA
TCCAATATGTCACGTCTACACACCATCTTTTTTTTGCCACGCAGAAAAATAAAGATCGAAACATCACACTAATGGAAAAG
GAAA-ACAGAACTGAACAACTATTGGATTGTTCTAAACCGAGCCGGTTCGTTGTTGATAGTTCTTGAAGGAACATCAGTG
TAGTAT--AACCGGAGAAGATAACTTGCATTTTGGTTGGTCTGAATGTGGCTAACTAGAAGCTTAT-GAATGGGGAACTC
AATT-AATAAAGATATCCCATTAATAAATTTACTGT-AAATAGTGCTCGAATGGAATATATCCATCCATATAGCAAATAA
TGTGGAAACCTTTCAGATGTTCCTTCCATGGCAAAATCTTATCTCTGAATTATCCAGACGATCCTTCGATTGCAAAAGAC
ATATCTCTGGTCTCTGGATTAAATAGCATCGGTCAGAGATACACATGTACGCGTGCAATC--ATATGATTGTCCACTACT
GATCTGGTGATATAGATGCTTCCCGTGAAGAATAACTTACA-TGCAATGCAGGCATCGTAGTCGTTTTCTTTTTTCCTGC
GAAAGAGATAAATGCAATATTT
>chr4A_619
AGG-----------------------------------------------------------------------------
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-------------------------------------------------------------AAACAACATCACTGGTTTT
GCAGCATGTGAGAAAAGAAGAACTAGCTTATTATAGAATGCACAATTAACTCGCCACCATTCTCTCTTGACCTCTCCTTC
CATTTTGGCCACCTTCCTTTGGTTTGAGCGCTCCGCCATTCCCCCGTCGCTGCTCCTCTTGCATTCCTCGATCCACAAAA
GGGCGAACAGCATAACAGATCAGAACTTTTTTGGCACATTTTTTATGTTCTTGGTCCACGAACAAGAAGGCAACAAGGCG
AGGATCGGAGGC--CACTGGCGATGCACGCCGCCCTCTTCTTCTTGCTCTCCTTGACCAGCGCCTCCGCGTCCGTCCTCG
CCGCCCTCGCGTCTTCCTAAGCTCCGCTCCACCGGCGACGATTGGTCGATGGCGCCGCCCCAGGAGGGGGATCAGTGCGG
GAGCCCGGCCGGCAGCGTGTTGATCTGGGTGGTGACGGTGCTGCTGCTCCTCGCCGTGCTTGGCGGCGGCGGGTGCCTCG
TGGCCTACGTCATGCTGCCGCCGAGCGAGGCGCCCGGATGGATCCCCTGCGTCGGCCTGGGCCTCGTGGCGCTCCCCTGG
GCGTTCTGGCTCGCCACCGTCGCCTACCGGTGCGTCACGGCGCGCTCGGCCGACCGCGCCGTGGCGCCCGCGGCCGCCGC
CGGCAGCTAATTGTAATTGGGCTCTTTCATTACTGAAGAGTAGGTAACCATTGTGGATGTTAGTATCGAATCTGTTGTCA
GT-AAAAATGCATTTAGCAAGGAGAATCAATCTGTGGGGATCAATTATGCATTGCAATATTTGCATGGTTATGAAGTAAA
AAAGTTGGTTATCTGAAAGTTGTGGCATGGTTATATTTTGTCTTTTAACTCATTATATGCTTTGCAGTGTGAAGCTGATT
GGAGACAGACAAAATTGATGTGAGGAT--TATCAACTAAATTCGACCGACCCCCGCAAAA-------AAAAAAAAA--TC
AACCGAGTTTGGCTTAAATCATTTCGATCAAAATCCGACGTGATGGTAGAGGCAAATATAATGGGCACCAACATCTGGAA
AAAAAAATTCATAATCATGCGACTAAACTGCACGTGCTGTTTGTGTAACACACAAAAATACAAGTTTTCCTAAGCAATCC
CCATTTGAATATATTACCCAAAGATGTATGGAGAACAGATTATATGGTTGTGG---------------------------
----TATGCTGATCAATTTCTTAAACCGCTGTGATCAAAAGGT-------------------------------------
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----------------------------------------------------------------------GAAATCATTT
ACTATTTTCCTTACGGCGGTGAAAGAGCTATGGTCATCATGGTGTTGAAATTATATAACATTTCCCCGC-AAAAGAAAAA
AAAAATAGAACCTTTAGCCCATTTCATCATTTTCGATAATTCCTCAAAAATCCCATTGTGTTCTCCTAGTGGTCCATAAT
GTAGGAATAAGAAGTGTGGAAAGTTTAGTCCCGCCTCAATTGTGGAGGGTGTGTTGCCTCACACACTACTAAGAGCTTGA
GAAGATGAGTCATACATGAGTGATCCTCCTCCGTCGCCGGCCACGCGAATCCTCGCACACGTGTCATGTTTTGTGATTGA
TCCAATATGTCACGTCTACACACGGTCTTTTTTTTACCACACA-AAAAATAAAGATTGAAACGGCGCACTAATGGAAAAG
GAAA-ACAGAACTGAAGAACTATTGGACTGTTCTAAACCGAGCCGGTTTGTTGTTGATAGTTCTGGAAGGAACATCAGTG
TAG--T--AACCGGAGAAGACAACTTGCATTTTGGTTGGTCTGAATGTGGCTAACTAGAAGCTTAT-GAATGGGGAACTC
AATTTAATAAAAATATCCCATTAATAAATTAATTGTAAAATAGTGCTAGAATGGAATATATCCATCCATATAGCAAATAA
TGTGAGAACCTTTCAGATGTTCCTTTCATGGCAAAATCTTATCTCTGAATTATCCAGACGATCCTTTGATAGCAAAAAGC
ATATCTCTGGTCTCTGGATTAAATAGCATCGGTCAGAGATACACATGTACGCGTGCAATCATATATGATTGTCCACTACT
GATCTGGTGATATATATGCTTCCTGTGAAGAATAACTTATCTTGCAACGCAGCCAT-GTAGTTGTTTTC-CTTTTCTTGC
GAAAGAGATAAATACAATTTTT
>chr4D_635
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--------------------------------------------------------------------------GGTATT
TCAGCACGTGAGAAAA-AAGAACTAGCTTATTATAGAATGCACAGTTAACTCGCCACCATTCTCTCGTGACCTCTCCTTC
CATTTTGGCCACCTTCCCTTGGTTTGAGCGCTCCGCCATTCCCCCGTCGCT---CCTCTTGCATTCCTCGATCCACAAAA
GGGCAAACAGCATAACAGATCAGAACTTTTTTGGCACATTTTC-CTGTTCTTGGTCCACGAACAAGAAGGCAACAAGGTG
AGGATCCGAGGC--CACTGGCGATGCACGCCGCCCTCTTCT---TGCTCTCCTTGACCAGCGCCTCCGCGTCCGTCGTCG
CCGCCCTTGCGTCTTCCTGAGCTCCGGTCCACCGGCGACGATAGACCGATGGCGCCGCCCCAGGAGGGGGAGCAGTGCGG
GCGGCCGGCCAGCAGCGTGTTGATCTGGGTGGTGACGGTGCTGCTGCTCCTTGCCGTGCTCGGGGGCGGCGGGTGCCTCG
TGGCCTACGTCCTGCTGCCGCCGAGCGAGGCGCCCGGATGGATCCCATGCGTCGGCTTGGGGCTCGTGTCGCTCCCCTGG
GCGTTCTGGCTCGCCATGGTCGCCTACCGGTGCGTCACGGCGCGCTCGGCCGACCGCGCCGTGGCGCCCGCGGCCGCCG-
--GCAGCTAA--------------TTTCATTACTGAAGAGTAGGTAACCATTGTG-ATGTTAGTATCAAATCTGTCGTCA
GTGAAAAAAGCATTTAGCAAGGAG-----ATCTGTGGGGATCGATTATGCATTGCAATGTTTGCATGGTTATGAAGTAAA
AAAGTTGGTTATCTGAAAAGTGTGCCATGGTTATATTTTGTCTTTTAACTCTT--TATGCTTTGCAGTGTGAAGCTGATT
GGAGATCGACACAATTGATGTGAGGATTATATCAACTAAATTCGACCGACCCCCGCAAAA-------AAATAAAAAATTC
GACCGAGTTCGGTTTAAATCTTTTCGATCAAAATCCGACGTGATGGTAGATGCAAACGTAATGGACCCCAACATCTGAAC
AAACT--TTCATAATCATGCGACTAAACTGCACGTGTTGTTTGT--AACACACAAAAATACAAGTTTTCCGAAGCAATCC
CTATCTGAATATATTATCCAAAGATGTATGGAGAACATATTATATGGTTGTTCCCATTAAAAATACATATTATATGGTTG
TGCATATGCCGACCAATTTCTTAAACCGCTGTGATCAAAAGGTAAAATCTGTCTAGGACACATCTAGATGTGACATAAGA
CATAGTTATGTCACATCTAAACTGATGTCCACTCTATTTGTGGTCTATTGTTTTGTCCTAGTTTTTTTTGCTTTTTGTTG
CTGCATTATATATTTATGGGAGCTTAGATGTGACATCCTTAAAAAAATCTATATGTGAATTATACAAACTGAAATAATTC
ACTATTTTCCCAATGACGGTGAAAGAGCTATGGTCATCATGTTGTTGAAATTATAGAACATTTCCCTGCAAAAAGAAAAA
AAGTATAGAACCTGTAGCCCATTTTATCATTTTCAATAATTCCTCAAAAATTCCAAGAGGTTCATA---TGGTCCATAAT
GCACGAATAAAAAGTAT-GAAAGTTTAGTCCCACCTCGATTGTGGAGGGTGTGT--------------------------
GAAGATGACTCATACATGAGTGCCCCTCCTCCGCCGCCGGCCACGCGACGTCTCGCACA--TGTCATGTTTCCTGATTGA
TCCAATATGTCACGTCTACACGTCGTC-TTTTTTTGCCACGCAGAAAAATAAAGATCGAAAGATTACACTAATGGAAAAG
GAAACACAGAACTGAACAACCATTGGATCGTTCTAAACCGAGCCGGTTCGTTGTCGATAGTTCTTGAAGGAACATCAGTG
TAG--TATAACCGGAGAAGATAACTTGCATTTTGGTTGGTCTGAATGTGGCTAACTAGAAGCTTATTGAATGGGGAACTC
AATT-AATAAAGATATCCCATTAATAAATTTACTGTAAAATAGTGCTAGAATGGAATATATCCATCCATATAGCAAATAA
TGTGAGAACCTTTCGGATGTTCCTTCCATGGCAAAATCTTATCTCTGAATTATCCAGACGATCCTTTGATAGCAAAAAGC
ATATCTCTGGTCTCCGGATTAAATAGCATCGGTCAGAGATACACATGTACGCGTGCAATCATAT--GATTGTCCACTACT
GATCTGGTGATGCATATGCTTACCGTGAAGAATAACTTATCTTACAACCCAGCCA-CGTAGTTGTTTTC-TTTTTCTTGC
GGAAGAGATAAATGCAATATTT
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
----------------------S---------------------S--------------------------------S--
-------------S------------------------------------------------------------------
----------------------------------------------------------------S---------------
------------SS------------------------------------------------------------------
---------------S-------------------------------S--------------------------------
------------------------S-------------------------------------------------------
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---------------------------------S----------------------------------------------
----------------------------------S---------------------------------------------
----S--------------------------------------------------------------------------S
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-------S-----------------------------------S------S--------SSSSSSSS--------S----
-------------------------------------------------------S-----------S------------
--SS---------------S----------------------S-------------------------------------
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------------------------S-------------------------------------------------------
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---SS---------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
----SS------------------------------------------------------------S---S------SS-
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--------------S------------------------SS------S----S---------S------S------S---
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>forward_49
-----------------------------AGATATTGATGCGGCCCGAG-------------------------------
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>reverse_1564
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-------------------------------------------CACCGACTCCCGCAAATAAA-----------------
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