>input_sequence_85133
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----------------------------ATGACCCCGACGGTGGCGGCGGCAGAGG-CGGTCGGCGAGGATGGCCGCTGG
GGCGAGGAGGTGGAGCCGATGACCCCGGCGGTGGCGGCGGC---------------------------------------
---------------------GGAG--GGGTCCCAGGGGGCTCGAGGACCGACGTCTGATGCGGTCGTGGTTCCTCGCCG
TCAAGAACTAGATCGAGCGCACG--TCGGCGGTAGCCGTCCAGAGGAAGAGGAGGAGCACCCTGCGCCGGTT---CGGCG
GCCGTGG---AACGGAGGAGAGGGAGAGAAAGGCCACCGGTGGCCCCATGAAGGCTGA----------------------
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>chr3A_1_TraesCS3A01G072100
GTCCCCCTAGTATATAAAACATGAAGATCATGATTTTTTTTTATTATAATGCAATAATGGTACAATGGAGCACTTTAGAA
CTTTTACTAAGAATTGGTACTACTTTGAAGCACTTAGTGCATACTAAAACGGATCATGGTGTTGCTCCCTCTCATCCTTT
TTTTGGACACCTTCATGGTGTTTTTTGTGTTTGATCTCTCTTCTTTCCTATTACTTTTTTGGTAAGAGCAACACCGTACA
TGAATGATCAACACACTTTTGAATGTACTCATAACTCAATGAATCAAATGATAAAAAAAACTATATGAAAATGGAGAAAA
ATGGATATGTCATATATAAATATCATGCTAGCTATATATATGATCACGCAAAGCGTATGAGAATATGGACCACATCTCTG
TGACGCCGGATTTTTAACCAGGGTAAATAATTTCATGTTTTTCATGTCTGACTTGTCAATTGCTGATTCACTATAATTGC
CATGGAAAATGTTTGATTTTTCATGGTCAAAAAAAATCTGACGTTTGATTTGTCATTGCGTCATTCGTTTTGTTGAGGCA
CGGACAGAAAATCTTCTTTCCATGATGCATACGCTGCGCTACCTTTGTAAGTGCATTTTCTTTCCATGTATAGCTGATCA
CCTCGTCCTCTTTCTTTTCAGAATAGTTTAGACTCTTATTATATTTTCTGTACCTCGAACTTCTGTTTCTGGGATTTTTC
TGTGAATGATTGAAAGCAGCGCCCACATGTTGTGTTTTATCAAATAAAACTGTTACAGTGATTGGCAATTTTAGGGACCG
TCCATTCACTACGATCAAACGGT-GCAGAAATAAAAGTTACG----------AGACTAAAATTACATGAAATTACAAATA
ATAATGGGACCATTACAAAATTATGGTGGGGCTAGTCATTTTCTAAAAGGGTAGATCCGTCCAATGTCAGTCAATGCTGA
TCGACT--------------------------------------------------------------------------
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-------------------------------------------------------------GTTC---CCCTATCTGTCC
GAAGCATTAGGGTAGGATAGGAGTT-------------------------------------------------------
------------------------GCCGATGACCCCGACGGTGGCGGCGGCAGAGG-CGGTCGGCGAGGATGGCCGCTGG
GGCGAGGAGGTGGAGCCGATGACCCCGGCGGTGGCGGCGGC---------------------------------------
---------------------GGAG--GGGTCCCAGGGGGCTCGAGGACCGACGTCTGATGCGGTCGTGGTTCCTCGCCG
TCAAGAACTAGATCGAGCGCACG--TCGGCGGTAGCCGTCCAGAGGAAGAGGAGGAGCACCCTGCGCCGGTT---CGGCG
GCCGTGG---AACGGAGGAGAGGGAGAGAAAGGCCACCGGTGGCCCCATGAAGGCTGAGGAGGT----------------
--CGCGCGATGGTGGACCGATGGGCGTCCAAGAGGCAGTTGACCGCCGAGGCATCCCTGGTTCTCATACAGCGCCGGTTC
GGCGGCCGCTCCGGCAAGGCCGTCCCAGCGGCAGGTTGAAGAAACGATGGCTCCCCGCCTGGAATACTCCCCTCCAGCAA
CCTCCCCGGCTACCTCCCGCAGCGCTCCGGCCATGTTCCTCCCCGTCGCAGCGCCCAATCCTCTTCCTCATTGCTGCAGC
GTCCATCGCCCAAATGTCGCCCCTAGTCGTCCATCAGGCGAGCGCATCCCTCCTTGCGATTTCCCAGCCTGGTTTGAATC
GTGGAGTTCTTGACCCTTTTTCTCTCTGCATCAGGTGTAGGAGATTCAGATTTTGTATCCTCTGAATCATGCGTGGAACA
CAAGGTCCTTTGATTATTGCTTCTCACTACAGATCATAGTTGGTTTCAGCAGCCTTTGGCGTAATGTTGCCAGGTAGGAA
GAGATGATCCAGAGTTACTGAAGCAAGAAGAGATCTAGCAGAAATAGTGATTTAACTTGCAATCACTCACGAAGTTTTAT
TTTACTACTGCTTTTGTTTCAGGTATCTGAGTCCATTGTCAGCTGCTCCTTTGACAGGGTAGTTGGCTTTGGACTTTATG
AACGGGGTTTTCCATCGATATGATTTGAGCATTTTGTCTGCACTGGATATTTGTGTACGCATACATACTCCTTATGCTTG
AACTACAAATACGCAGGTAAGTGTGTTGAGATTGGTCTGCCTGAACTAATTCTCTTGGTTAGCTTGTTTTTTGCTTAGTG
TACCCGAGGTTCATCTCGGGATTCCTGATCCGCATGTCGATCTCGCATATACACTTGTTGCGTATGTGTTGCATTGCATC
AATTAATTGGCTAAATGCTATTGTGAATATAATTAATTCTTCCTCGCCTAAATTTTTTGTTTTCTTAAGCTTACTAATAC
ATGATAGTGTTGTGAAGTACTCCCTCCGTAATATTT
>chr3D_764
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-------------------------------------------ATACAACCGTTACAGTGATTGGAGATTTTAGGGGCCG
TCCATCCACTGTGATCAAACGGT-GAAGAAATAAGAGTTACGAGGAGTTACAAGACTAAAATTACATGAAATTACAAATA
ATGGTGGGACCATTACAAAATTATGGTGGGGCTGG-CATTTTGTAAAGGGGTAGATCCGTCCAATT-CAGTCAAGGCAGA
TACATGTCCTTTTCGCACCCTCACTGTCTGGCCCTACAGTTCTGGG----------------------------------
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-------------------------------TCGCTTGTCGGTTGTTCCCTTAGAAAATCCGTTC---CCCTATCTGTTC
GAAGCAGCAGGGTAGGATAGGGCGGAGCCA--------------------------------------------------
-------------------------CCAATGACCCCGACGGTGGCGGCGGCAGAGGGGGGTCAGCGAGGATGGCCGCTGG
GGCGAGGAGGCGGAGCCGATGACCCCGGCGGTGGCGGCGGC---------------------------------------
---------------------GGCAGAGGGTTCCCATGGGCTCAAGGACCGACGTCCGATGTGGTCGCAGTTTCCCACCG
TCAAGAGGTAGATCGAGCGCACG--GCGGCAGTAGCCATCCAGAGGAAGAGGAATAGCACCCTGTGTCGGAT---GGGCG
GCCGTGGCGTTACGGAGGAGGCGGGGAGAAAGGCCAACGGTGGCCCCGTGAAGGTCGAGGAGGCCGTCGCCTCGTCGTGC
AACGCGCGATGGTGGACCGGTGGGCGTCCAAGAGGAAGTTGACCGCCAAGGCATCCCTGTTTCTCGTACAGCTCCGGTTC
GGCAACGACTCCGGCAAGGACGTCCTAGCGGCAGG---------------------------------------------
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>chr6D_764
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-------------------------------------------ATACAACTGTTACGGTGATTGGCGATTTTACAGGCCG
TCCATCCACTGCGATCAAACGGT-GGAGAAACTAGAGTTACAAGGAGTTACGAGACTAAAAT----------TACAAATA
GTGATGGGACCATTACAAAACTAGGGTGGGGCTAGTCATTTTCTAAAAGGGTAGTTCCGTCCAATTTTAGTCAAGGCCAA
A-----TCCTGTTCACACCCTC----------------------------------------------------------
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-----------------------------------------------------------TTGTGTGGCCCGACACATTTG
GGTCGCTCCT-----------------------------CCACTGTTCCCGTAGAAAACTTGTTCGAGCCTTATCAGTTC
GAAGCAGCAGGGTAGGATAGGGCGGAGCCGCCGGTGTCCCCGGCGGTGGCGGTGGCAGCGGCAAA---------------
-------------------------------------------------------GGGGGTCGGCGAGGATGGCCGCTGG
GGCGAGGAGGCGGAGCCGATGACCCCGGCGGTGGCGGCGGCAGAGGGGGTTGGCGATGATGGCCGATGCGGCGAGGAGGC
GGAGCCGATGACCCCGGCGGCGGCGGAGGGGTCCCAGGGGCTCGAGGACCAACGTCTGATGCAGCCGTGGTTCCTCGCCG
TCAAGAGCTAGATCGAGCGCACG--GCGG-TGTAGCTGTCCAGAGGAAGAGGAAGAACATCCTGCGCCGGTT---CGGCC
GTGGCGT---CACGGAGGAGACGGAGAGAAAGGGCACCGGTG--------------------------------------
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>chr4D_768
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-----------------------------------------------AACTGTTATGGTGATTGGCGATTTTACGGGCCG
TCCACCCACTGCGATCAAACGGT-GGAGAAACTAGAGTTACGAGGAGTTACAAGACTAAAAG----------TACAAATA
GTGATGGGACCATTACAAAACTAGAGTGGGGCTAGTCATTTTCTAAAAGGGTAGTTCCGTCCAATTTTAGTCAAGGCCAA
A-----TCCTGTTCGCACCCTTGCTGTGTGGCCCGACACATCTGGGTCGCTCCTGGTTCTAATAAAGAATCTGGTGTCCA
TGTATTTTTTTCAAACATATTTTTTTGGTGTCAACTTTTTTTCATACACATTCTATATTTTTTGTATAAATAAGGAACAT
TTTTTATACACACATTTAACAATTTTTAAATACATGCTTAACACTTTTTAAAACATATTTTTTATGTCAACTTTTTTGCA
TATATATTGTACATTTTTTGTATATATCAGGAACATTTTTTTATACACGTTTAACATTTTTTAATTACATAATTAACATT
TTTTTAAACATATTTTTTATGCCTACTTTTTTTGCAAAAACAATTAGCCCACAGCGAGCTAATTAAATCCAGTCGGCCCA
TAGTGGGCCGACAGGACCCAGTCAGCCCACAGTGGGCCGACAGGGGCCAGTCGGCCAGCTGTAGGCCGACTGGAGTCCAA
TCGGCCTGCTGTGGGCTGACTAGGCCCAGTCGGCCTGCAGCGGGCCGACGGTGTATTATTTTTGAAAAAAATTACCCAGC
GTAATATTTATGAAAATTAATAAAAAATGTATTATTTAAAAAAATTAGCACCATTACAAAACTAGAATGGGGCTAGTCAT
TTTCTAAAAGGGTAGTTCCGTCCAATTTTAGTCAAGGCCAAATCCTGTTCGCACCCTTGTTGTGTGGCCCGACACATCTG
GGTCGCTCCTGGTTCTAATAAAGAATCTGGGTCGCTCCTCCACTCTTCCCGTAGAAAACTTGTTCGAGCCCTATCTGTTC
GAAGCAGCAGGGTAGGATAGGGCGGAGCCGCCGGTGACCCCGGCGTTGGCGGTGGCAGCGGCAGAGGGGTTCGGAGAGAA
TGGCCGCTGGGGCGAGGAGGCGGAGCCGATGACCCCAGCGGTGGCGGCGGCAGAGG-GGGTCGGCGATGATGGCCGATGG
GGCGAGGAGGCGGAGCCGATGACCCCGG------CGGCAGC---------------------------------------
---------------------GGCAGAGGGGTCCTAGGGGCTCGAGGACCGACGTCTGATGCAGCCGTGGTTCCTTGCCG
TCAAGAGCTAGATCGAGCGCACG--ACGG-TGTAGCCGTCCAGAGGAAGAAGAAGAGCACCCTGCGCCGGTT---CGGCC
GTGGCGT---CACGGAGGAGATGGAGAGAAAGGGCACTGGTGGCCCCGTGAAGGTCGAGGAGGT----------------
--CGC---------------------------------------------------------------------------
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>chr3A_771
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--------------------------------------------------TGTTACAGTGATTGGCGATTTTAGGGACCG
TCCATCCACTGCGATCAAATTGTGGGAGAAATAAGAGTCACGAGGAGTTACATAACTAAAATTACATGAAATTACAAATA
ATGGTGGGACCACTACAAAATTATGGTGGGGCTAGTCATTTTGTAAAGGGGTAGATCCATCCAATGTCAGTCAAGGCCGA
TACATGTCCTGTTCGCACTCTCGCTGTCTGGCCTGACAGATCTGGG----------------------------------
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-------------------------------TCGCTCGTCGATAGTTCCCCTAGAAAATCCATTC---CCCTATATATTC
GAAACAGTAGGGTAGGATAGGGCGGAGCCA--------------------------------------------------
-------------------------CTGATGACCCCGCCGGTGGCGGCGGTAGAGG-GGGTCGGCGAGGATGGCCGCTGG
GGCGAGGAGGCGGAGCCACTGACGGCGGT---------------------------------------------------
------------------------GGAGGGGTCCCAGGGGCTCGAGGACCGACGTTTGATGTGGCCGCGGTTCGTCGCCG
TCAAGAGCTAGATCGAGCACACGCGGCGG-GGTAGCCGTCTAGAGGAAGAGGAAGAGCACCCTGCGTCGGTTGGGCGGTC
GTGGCGT---TACGGAGGAGGCTGGGAGAGAGGCCACCGGTGGCCCCATGAAGGTCGAGGAGGCCACTGCCTCATCATGC
AGTGCACGATGGTGAACTGGTGAGCATCCAAGAGGCAGTTGATCGCCGAGGCGTCCCTGGTTCTCATACAGCGCCGGTTC
GGTGGCTGCTCCGGCAAGGCCGTCAAAGCGGCAGGT--------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------------S-------------
-----S----S--------------S--------S---------------------------------------------
--S-----------------------------------------------------------------------S--S--
-SS-SS--------------------------------------------------------------------------
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------------------------------------------------------------------------------S-
------S--------------SSSS-------------------------------------------------------
---------------------------------------------------------S----------------------
----------S---------------------------------------------------------------------
-----------------------S-------S--SS--------------------------------------------
------S------------------S---------------------------S--------------------------
----------S----------S--------------------------------SS------------------------
-------------------S------------------------------------------------------------
------S------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_651
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-----------------------------------------------------------------------AGCTGATCA
CCTCGTCCTCT---------------------------------------------------------------------
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>reverse_2830
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-----------------------------AGTCCATTGTCAGCTGCTCC-------------------------------
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