>input_sequence_85111
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---ATGGAAGCTGCACCCGT------------------------------------------------------------
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-----------------------------------------------------------CGGTGTGGTCGAGATGGATGC
AATGACGCACCCGACGGCCAGCTATGAACCATCGATCACAGAGTTGCAAACTGCCGAAT--------------------G
GCAAGATGCACCTGCGGAGGGAGAGGGGGCGCTGCTGGAATCGACCATCAATTTTATTGTAACCAACATGGAGACGAGTT
GGAACCGACCAACAATTTTGGTGGAACCAGCATGGAGACGAGTTGGAACTGACCAACAATTTGGTTGCGACGCCAAAGAC
TGTTGGGACCAACATGTCAACTAG--------------------------------------------------------
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>chr6A_1_TraesCS6A01G360800
TCACAGTCATATGAACATGTATTAGTCATGAAGAAAGCAATAGCAACATACTAAACGATCGAGTGCTAAGCTAACGGAAT
GGGTCAAGTCAATCACATCATTCTCCTAATGATGTGATCCCGTTAATCAAATAACAACTCTTTGTCTATGGTTAGGAAAC
ATAACCATCTTTGATTAACGAGCTAGTCAAGTAGAGGCATACTACTGACACTCTGTTTGTCTATGTATTCACACATGTAT
TATGTTTCCAGTTAATACAATTCTAGCATGAATAATACACATTTATCATGAAATAAGGAAATAAATAATAACTTTATTAT
TGCCTCTAGGGCATATTTCCTTCACCTTGTTGTCATAATACTTTCGCTTACGGTCTACGAGGGTACGTGGACAACACTCT
TCCCCTCTCGTTGCTATGCATCACCATGATCTTGCGTGTGCGTAATGTTTTTTTAAAATTACTACGTTCCTCAACATTGC
GATGGTATTAAACAAGAAACATGAGGAGTAAAACTAATGTTGCCGTGTGTCATGGCAACTTTGGTGGAAA-TGTTCTAGA
TACCATGATCCGTGGACTAT-AAATGCCATGATCCACACAATATAATTCCCATGATACGG--------------------
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--------------------------ACACTAAATTTTCTATGGTCCCATTCAAAA-GAAAATTTGCCATGTTGC-----
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--------------------------AAAAA-------------------------------------------------
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------------------GGGAAGAAATTTGCCATGGTCCATATAGCTAAAACTAGTCATGCCACATAAACTACATTTGC
CATG----------------------------------------------------------------------------
----------------------------------------------ATCCATTAAACTAAATTGCCATGGTCCAAACAAA
AA-AATCTC---------TGTGAACAAAAGAAAATTGCCATGCTCCATAAACTAAATTTGCCATGCCCTCTTCAGCTTTG
CCCTGC-TCCAACTTCTTTCCTCATCTCTTTCACATTGGTTTGTCCTTCGTGGGGGCGGCCAA--GCGCACTGCTCTCAC
CCCTCCCCATTTTTCCTTCTCTGCACACCCTCTCCCTCATCCTCTATCCT-CACGACAACACGGCATGATTTAATCAACG
ACGATGGAAGCTGCACCCGT------------------------------------------------------------
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-----------------------------------------------------------CGGTGTGGTCGAGATGGATGC
AATGACGCACCCGACGGCCAGCTATGAACCATCGATCACAGAGTTGCAAACTGCCGAAT--------------------G
GCAAGATGCACCTGCGGAGGGAGAGGGGGCGCTGCTGGAATCGACCATCAATTTTATTGTAACCAACATGGAGACGAGTT
GGAACCGACCAACAATTTTGGTGGAACCAGCATGGAGACGAGTTGGAACTGACCAACAATTTGGTTGCGACGCCAAAGAC
TGTTGGGACCAACATGTCAACTAGTTGGAACCGATGCCCGGGTTCGCT--------------------------------
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---------------------------GGATCGTCGGGGCAACACGTTCGTGC-----GAGAACCACCCCGTTCTACCCG
TTGGATGGTC------------------------------GAGCCTCACGCGGAAAGCAAGAAGGCATGTGGGCAGGAAG
CCAGCCAGAGCCAGCGCGCGAGCTGTCTAAGGCAGCGTCACCACGACCTTGACGTGTTCCACGTGAGCGAGTGAACGTCA
CGGAGCCAGCAGGAAGGTAGCTTCAAGGAAAGGC----------------GCCAGGTCAAGTCAGCGTTCCCATCCTGCG
GCCAGGCCCGCCCGATCCACACCACCGGCGCAGCAGCCGGGGCAGGCGGCCGCACACCACCGGCCGCCGTACGTCGTACG
TGCCGCGCACGTGAGCATCGAGCCTAGCCTAGCCGAGCCGAGCCGAGCCGAGCGGAGAGAGAGAGAGAGAGACGAGCCCA
TGCCGACGTCGGCATCGCCCTCGCACCCACTCCACCCATTCATTCATTCACTCATTCTG---------------------
------------------------------CTTTAATCATACGGCTCATCGCGTTTCACACCATCCCTCCCCAGCCTTCG
CCTCACCGACCGGTGGGCCGCATTGACGGTGGGCCCTGCCGGACCCGCACGC----CACGATGTGAAGCTTGGAGCTGGA
CCCGGAAATATGCTTG----------------AGAAAAGAAAAGGCAAGCTGAAATTTAGGAAAAAGATTGACCACGACG
TGCTCTGCTCCGCCTCGTCCTCCCCGCGTCCCCGG-----------------------------------GCCCAACGAC
GAGTTGTTTTTATCGCGGCTGCCCCTCTGTGACCAACCAGGTCCACGGAAGGTGCCTCGCACAGCATAACATAATCCGCG
AATAATATTCTTTTTTTAATAACCAAAGAAAGATACCACTCGTACC--ACCGAAAGATGCCTCGCATTATTTTACTTATA
TTATTATTATTATTTGGCGAGCGATTATCACTCATCATCAATTA---TATCAGCCACGGTAGGTGGTGCGGCGATAATGA
GAATCGATAAGGACGCGCGGGCGGCGTGGGCCCGGCCCGAAACCG
>chr6B_473
AAATGCCATGATCCATACACTATAATTTTCATGATGCATAGACTATTTGCCATGGCCCGGTGCAAAAGAAATTTGCCATG
TTGCAAAAAGGGAAGAAATTTGCCATGGTACATATAGTAAAAAAATGCCATGATCCATAAAATACAATTGTCATGCCCCA
TGAAAGTAAATTGCCGTGGTCCAAATAAAAATTAATTTTTGATGTGTTGTAAAAGAAAGCAAAAATTGCCATGATCCCCA
AACTAGATTGCCAGGCTCGAACAACTTAATTTGCCATGGTCCAATAAAAAAT----------------------------
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-----------------------------------------------------------------------------TGC
GATGGTATTAAACGAAAAACATGAGGAGTAAAACTAATGTTGTCATGTGTCATGGCAACTTTGTTTGAAA-TGTTCTAGA
TATCATGATTCGTAGACTAC-AAATGCCATGATCCACACAATATAATTCCCATGATACGT--------------------
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--------------------------ACACTTAATTTGCCGTGATCATGTTCAAGG-GAAAATTTGCCATGTACCATATA
GCTAAAAATTGCCATGTGACATGTACCTAAAATTTGCCATGTACCATATAGCTAAAAAAATTGCCATGTACCATATAGCT
AAAATTTGCCATGTACCATATAGAATAAAAA-------------------------------------------------
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------------------GGGAAGAAGTTTGCCATGGTCCATATAGCTAAAAATTGTCATGCTCCATAAATTATATTTGC
CATG----------------------------------------------------------------------------
----------------------------------------------ATCCATCAAACTAAATTGCCATGGTCCAAACAAA
AGTAAATTTTGGCCATGTTGTGAACAAAAGAAAATGTCCATGCTCCATAAATTAAATTTGCCATGCCCTCTCCTGCCTTG
CTCCGTTTCCAACATCTTTCCTCATCTTTTTCACATTGCTCTGTCCTCCGCAGGCGTAGCCATGCGCAGACTACTCTCGA
CCACCCCCC-TTTCAAC-CTTTGCCCACCCTCTCCCTCATCCTCTGTCCCCCACGACGACACGACATGATCTAATCAACG
ACGATGGAAGATGCAACTATTTGGAGAGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGTATGGTCGAGCTTGCTAC
AAAGACGAGCCCGGTGATGAGCTATAAACCAGCGGGCATAGAGTTGC-AACTGCCGGTTGGCGGAACTGCAATCTAAGGG
GCAAGATGCACCTGCGGGGCCA------GCGCTGCTA-------------------------------------------
---------------------------------------------GAACCGACCAGCAATTTTGTTGCCATGCCGAAGAC
TGCTAGGACCAGCATGTCAACTAGTTGGACCCGGTACCCGGTTTTCCTAGAAATAGCGAGCAATTTTGCTGCCGCCGGCT
GATGCCGGAGCTGGAACCGTCAGATGTTTCTGCTACAACTCGTGAAGCCCCGAGCTGGAACGAGCAGAGATTTTTGCTAC
AATAGACGAAGCCCCAAGCTGGGACATCAGTTGTTTTTGCTCCATCAATTGGAGTGTTTTTTCGGTGGCGATGGCGAGCC
CTGATTTTTGTTGCAATAGGCAACCGCAAAAGCTTTCATTGATACATGTTTTGCTACGATGGAAGCTGATCCAGTGAGGG
GGGCGGGGGTTTGGGGATGTGGGACCGTGCCGGTGAGGGGGTGCAAGCGTCTGCGACGGCTAGCTAGCCCGTGGCAGCGG
GCGTTGAGTGTTCTCGCCGGGAAGGAGGAGGAGAGACGCGAGAGAACCCGAAGGAGAACGATGAGGGCGTTTTTGCGGAA
GCCAAATCCCACGAATGAAAATGGGTGAATCGGACGTTGGCGCGGCAACCGGCCGGAATTTGGGCTGGTCGGCCGAAAAC
AAACACCGGAAGAGGGAGGGCACGCGAGGATCGTCGGGGCAACACGTTCCTGTGAGAAGAGAACCACCCCGTTGTATCCG
TTCGATAATTGTCCACCCCTTTTGCCGGTTAACGCAGGGTGAGCTCCACGCGGAAAGCAAGAAGGCATGTGGGCAGGAAG
CCAGCCAGAGCCAGCGCGCGAGTTAACT-AGGCAGCGTCACCACGACTTTGACGTGTTCCACGTGAGCGAGTGAGCGTCA
CACAGGAGGCAGGCAGGAAGGTACTAACTTGAACCGAAAGGTGCCACCGTGCCAGGTCAAGTCAGCGTTCAAATCCTGCG
GCCAGGCCCGAT---------CCACCGGCGCAGCAGCCGGGGCAGGCACCAAGCG----CCGGACGCCGTACGTCGTACG
TGCCGCGCACGTGAGTCTCGAGCCTAGCTAAGCTAAGCCGAGC-----------------------------CGAGCCCA
TGCCGATGTCGGCATCGCCCTCGCACTGACTCCACCCATTCATTCATTCACTCTGCTTTACGTGTCCCCGGCCTCTCCCT
TTCCCTTCTTTTTCCCAGAGGGAGACGCCCCTTTAATCATATGGCTCATCGCGTTCGACACCATCCCACGCCCACGCCTT
CCTCACCGACCGGTGGGCCGCATTGACGGTGGGCCCCGCCGCACCCGCAATACATACACGATGCCAAGCTCCGAGTTGGA
CGCGAAAGGCGAGCCGAAAATATGCTTAAAAAAGAAAAGAAAAGGCGAGCTGAAA---------AAGATTGACCACGACG
TGCTCTGCTCCGCCTCGTCCTCCCCGCGTCCCCGGTACCGACCGCCGGGCCCGCCGCCGGGTCGCGACGAGCCCAACGGC
GAGTTGTTTTTATCGCGGCTGCCCCTCTGTGACCAACCAGGTCCACGGAAGGTGGCACACACAG-----CATAATCCGCG
AATAATATA----TTTTTCTAACCCAAGAAAGATACCACTCGTACTATACCGAATGATGCTTCACATTTTATTAT-----
----TATTATTATTTGGCGAGCGATTATCACTCATCATCAATTATACTATCAATCACGGTA---GGTGCGGCGATAATG-
GAATCGATAAGGACGCGCCGGCGGTG-GGCCCCGGCCCGAAACCG
>chr3D_473
AAA-----------------------------------------------------------------------------
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---------------------------------------------------------------------------ATTGT
GATGGTATTAAACAAGAAACATGAGGAGTAAAACTAATGTTGCCATGGGCCATGTCAACTTTGTTGGAAAATGTTTTATA
TATCATGATCTGTGGACTACAAAATGTCATGATCCATACAATATAATTCCCATGGTACATCCATTAAATTTGCCATGGTC
TCGTTCAAAAGTAAATGTGCCATCTTGCAAAAAAGGAAGAAAATTTGCCATGTCCACATAATTAGGAAATTGCCATGCTC
CATAAACTACATTTGCCATGATACACACACTAAGTTTGCCATGGTCCCTTTCAAAATGAAAATTTGCCATGTTGC-----
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--------------------------AAAAATGAAGAAAATTGTCCATGAATCATATAATTAGAATATTGCCATGCTCCA
TAAACTACATTTTGCATGCTCCATAAACTACATTCTCCATGATAGGTACACTAAGTTTGCCATGGTCCCATTAATTTTTT
TTGCCATGTTGCAAAAAAGGAATAAAATTTGCCATGTTCGATATAATTAAAAATTGCCATGCTTCATAAACTACATTTGC
CATGATACATACACTAAGTTTGCCATGGTCCCGTTAAAAAAAATTGCCATGTTGCAAAAAAGGAATACAATTTTCCATGG
TCCATGTAATTAAAAATACCATGCTCCATAAACTACATTTTTCGTCATCCATTAAACTAAATTGCCATGGTCCAAACA--
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>chr6D_476
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---------------------------------------------------------------------------ATTGC
GATTGAATTGAACAAGAAACATGAGTAG---AACTAATGTTGCCATGTGTCATGGCAACTTTGCTGGAAA-TGTTCTAGA
TACCATGATCCGTGGACTAT-AAATGCCATGATCCACACAATATAATTCCCATGATACGG--------------------
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--------------------------ACACTAAATTTTCCATGGTCCCATTCAAAA-GAAAATTTGCCATGTTGC-----
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--------------------------AAAAA-------------------------------------------------
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------------------GGGAAGAAATTTTCCATGGTCCATATAGCTAAAACTTGTCATGCCGCATAAACTACATTTGC
CATG----------------------------------------------------------------------------
----------------------------------------------ATCCATTAAACTAAATTGGCATGGTCCAAACAAA
AATAATCTC---------TGTGAACAAAAGAAAATTGCCATGCTCCAAAAACTAAATTTGCCATGCCCTCTTCAGCTTTG
CCCCGT-TCCAGCTTCTTTCCTCATCTCTTTCACATTGCTTTGTTCTTCGTGGGC---GCCAA--GCACACTGCTCTCAA
CCCCCCTAC-TTTTCCCTCTCTGCACACCCTCTCCCTCATCCTCTATCCT-CACGACAACACGACATGATTTAATCAACG
ACGATGGAAGCTACAATCGT------------------------------------------------------------
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-----------------------------------------------------------TGGTGTGGTCGAGTTGGATGC
AATGACGCACTCGACGGCGAGCTATGAACCAGCGGCCACAGAGTTGC-AACTGCCGGTT--------------------G
GCAAGATGCACCTGCGGAGG----GGGGGCACTGCTGGAATCGACCATCAATTTTATTGTAACCAACATGGAGACGAGTT
GGAACCGACCAACATTTTTGGTGGAACCAGCATGGAGACGAGTTGGAGTCGACCAACAATTTTGTTGCGACGCCGAAGAC
TATTGGGACCAACATGTCAACTAGTTGGAACCGGTGCCCGGGTTCGCT--------------------------------
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---------------------------GGA--------------------------------------------------
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>SNPs
SS-SSSSSSS--SS-S-SSSSS--S-SS-S-S--SSSSS-S-SS-SSSSS-SSSS-SSSSSSSSSSSS-SS-SSSSS-SS
SS-SS--SSSSSSSSS-SSS-S-SSSSSSSS--S-SS-SSSSSS-SS-S-SS-S-S-SSSSS-SSSSS--SSSS-SSSSS
SS--SSSSSS---SSSSSSSSSSS-SSS--S-SS-SSSS-SS-SSSSSSSSSSS-SSS-SSS-SS-SSS--SSSSSSSSS
S-SSSSSSSSSSSSSSS-S-SSSSSSS-SSSSSSSSSSSSSSSSSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
--------------------------------------------S------------------S----------------
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---------------------------------------S----------------------------------------
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------------------------------------------------------S--------S----------------
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---S-S--------------------------------S---------------S-SS---------S-----------S
---S----SS------S----------------------------------------------S----------------
---------------S----------------------------------------------------------------
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------------------------------------------------------------------------S-------
------------------S------------S--SS-----------S--------SS----------------------
--------------------S-SS--------------------------------------------------------
--------------S----------------------------------S------------S-----------S-----
---------------------------------S----------------------------------------------
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-------------------------------------------------S--S--------------------S--S---
--S---SS-S----------------------------------SS----------------------------------
----------------------S-SS--S------------------S--------------------------S-----
-SS--SSS-----S---S--S-S-S-SSSSSSS-------------------------------------SS--------
----------SSSSSSSSSSS--------------------------SS-SSSSSSSSS----S----------------
---------------SS-----------SS---SS--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
------S-------------------SS-------------------------SSSS-S---------------------
-----------------------------------------S-------------SS----------S-S--SS-SSSSS
------------------------------------S----S-------SSS-----------SS-----SS---S----
-S--S--SSSSSSSS-------------------------------S--------SSSSSSSSS----------------
------------------------------------------------------------------------------S-
------------------------------------------------------S-S-S-----SSSSS-----------
--------SSSSS----SS-----S--------------------S--------S-----S--S----S-S---SSSSSS
SSSS------------------------------------------------SS-------SSS---------------S
------------------S-----S-S--S---------------
>forward_421
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-CCCCTCTCGTTGCTATGCAT-----------------------------------------------------------
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>reverse_2634
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-------------------------------------------------------------------------CTACCCG
TTGGATGGTCGAG-------------------------------------------------------------------
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