>input_sequence_85103
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ATGAAGAGGCTGGTGGTCCTGAGGAGGTGCGAGCCGATCGTGCGGTTCAGCTGCTGCGGCGTGCGGTACGGCGAGTGCCG
CCACAACCACGCCGCCAGCACCGGGGGCTATGCTGTGGATGGCTGCAGGGAGTTCATCGCCGAGGGCGAGGAGGGCACCT
TGGGCGCGCTCAAGTGCTCGGCCTGCGGCTGCCACCGCAGCTTCCACCACAGGGTGCAGGTCTACGAGGTTGCATGGGAC
TGCGAGTCCGACACGTCGTCGTCGTCTTCAAGCAGCGGCTAG--------------------------------------
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>chr5B_1_TraesCS5B01G226000
AGATGTTTAAAATCCCTGCTTTTGAAGTAGATGCAGCACCTAAGAAAGGTGAAGG-------ACCTTGGACCCCACTCAA
ACAGGGACCATCCATAGTCTACATGTAATAGCATGTTTGGGCTGCCCTGCAATATCTGAATGCTTCTGGTACGTTTGGTA
TTCAATCAAGTAGACTGTGTCATCACT-GTTTAAGC------------CAGGACATCCTATACCGTTAT--------TTT
TCCATGACGAGTCACTAATCCTTAGTGGTAAGTACATAG------TTGCGTGCTTGATTAAAAGATATTTTTT-CACCTT
TGCGACTATTGCATGATTGTGATCCCTTCTTTTGCTGTATATGATTG---CACTTTAGCTTTTCCCCTATCACATTCGGT
CATTTGTTGTTTAGGAGTCTAAATCAATAT--AAATCCATGTCCACACATTATGCCACATGCTGAAACAGTAAAGGAAAT
CTATTGCACAGGGATGGGGTAGAGCAACAGGTGCCTGGTGGCCAGAGAATGAGCAAAGGAAAACAACACCCTGCCTTCTT
AGATATCTAGGCTGGCATGCAAATGCTGATGATATCCTTTCGACCGAAGGGGCCTACTCCTTTGGGATTCTTAAGATTCA
AGTATCCTTAACTGGTCACCCCAATTATATGAAACGAAGAAAAGGAGTAGGAAAGAACACACAACACACACCCGGAGAAC
GAGGTAGGGCAGAAAGGTAGGACTCTCATCTAAGGTTTGCCTTAATGGCCCAAGAATTGCCCACCACTGCTAATGTGAGG
TGGAATTTGCTGGACCATCAATTGAGCCAGCCCAATTAGGTCTCCACATGCATGAGTGGGTGATCATGTGTCAAGTTTAT
GCAGGTTAGCATGCACTTTGTCCGTTGGAAACGATGTATCGTTAGGCGAAGGAGGGGAAGGAGGTTGTCTATAAATATGC
AGTGCGATGGATAGGGGTTGGTTTGTGCTGAAAGCAAGCTAGCTGGGAGCATAGTGGAAGAAGAGAGAGGCCACCTCGTG
ATGAAGAGGCTGGTGGTCCTGAGGAGGTGCGAGCCGATCGTGCGGTTCAGCTGCTGCGGCGTGCGGTACGGCGAGTGCCG
CCACAACCACGCCGCCAGCACCGGGGGCTATGCTGTGGATGGCTGCAGGGAGTTCATCGCCGAGGGCGAGGAGGGCACCT
TGGGCGCGCTCAAGTGCTCGGCCTGCGGCTGCCACCGCAGCTTCCACCACAGGGTGCAGGTCTACGAGGTTGCATGGGAC
TGCGAGTCCGACACGTCGTCGTCGTCTTCAAGCAGCGGCTAGGCTGCTGCCGCTGCCGTTCTCCTCTGTCGTCAAGCTGC
TGCTGCC---GCTGTTGCATCATGTCTGCTCTAGGACCCCTATGATTGTTCACTAATCCTGTATTGAAATACTTATAATA
ACTCAAAGTGAGCATCTCTAGTCTACTCTCCGGTGTCTTGTTTGTTCCCTCATCCTGATTGTAACCCCATGCAAGCTTAT
GTTATCTATCTATCTACCTATTGCTTCTCTGTATCTGTCAATGGCCATGGTTCATGGTAACTGCTCTGGCTCCAAACTTT
TTCCTATGGATACTGCACCTGGCT--------------------------------------------------------
---ATATATGTGTTTTCCTTTTTGTCAGCTCATTGCCGAGGTTTGTGTCATCTGAACTTCGAGAGACATTCCTAT--TCT
CCAAATCCAAGA-----------ATCCAGGCAAACTCAAGTTCAGGCGCACAGCATACGTAAAATGCTACTCTGAGTTCA
ACCTTAGTCCAAAACTACAACACTTATTTTGGATCGAAGGCAGTAGCTAACTCCATTTCACATGCTTCTTCT---CAAGT
GTTTCCTCAGTGGATGAAATGTTCTAGATC---------------GTGCTGTTCTAGATTGCATGCCTCTGTCCTGAAAG
GGTTGCTGCTGTGCTATTGCACAATACATCCTGATTTTGAAACCAATTGAATGGAGATCATCAAATCACTGGGGAGGAAA
GCTAGCCTGGTCG-------------------------------------------------------------------
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--------------------------------------------------------------------------ACACGA
ATGCTTATTTTGGACATTTATGTGGAAGGAAAAGTTAGATGCGTGGGCTGCTTGGACCTGCCTGCC-----TCGACAGCG
GCATAAAAAGGGGCAGCACGACAGCAATTATAGCAGTAATTCGCTGAGATACACACTATGAATAGCTCTAGCCAGCCAGC
CAGCCTTTTTCTTTTCATCTTCCTCTCCTTTTCCATGGAACTGCTTTCGTGTCCCGTTCCATCCGGCCTTTTGGCCACTC
GTGCAACAACTGTTTGGGAGAGCCGATGAACCCCCCGGCCTTGACACAGATCGCCATTGTCGTCGTGTTCCTCAGATCCA
G
>chr5D_1
AGATGTTTAAAATCCCTGCTTTTGAAGTAGATGCAGCACCTAAGAAAGGTGAAGGCGTGATGACCTTGGACCCCACTCAA
ACAGGGACCATCCATAGTCTACATGTAATAGCATGTTTGGGCTGCCCTGCAATATCTGAATGCTTCTGGTACGTTTGGTA
TTCAATCAAGTAGACTGTGTCATCACAAGTTTAAGC------------CAGGACATCCTATACCGTTATGGATTTATTTT
TCCATAACGAGTCACTAATCCGTAGTGGTAAGTACAAGTACATATTTGCGTGCTTGATTAAAAGATATTTTTTTCACCTT
TGCGATAATTGCATGATTGTGATCCCTTCTTTTTCTGTATATGATTGTTGCACTTTAGCTTTTCCCCTATCACACTCGGT
CAATTGTTGTTTAGGAGTCTAAATCGATAT--AAATCCATGTCCACACATTATGCCACATGCTGAAACAGTAAAGGAAAT
CTATTGCACAGGGATGGGGTAGAGCAACAGGTGCCTGGTGGCCAGAGAATGAGCAAAGGAAAACAACACCCTGCCTTCTT
AGATATCTAGGCTGGCATGCAAATGCTGATGATATCCTTTCGACCGAAGGGGCCTACTCCTTTGGGATTCTTAAGATTCA
AGTATCCTTAACTGGTCACCCCAATTATATGAAACGAAGAAAAGGAGTAGGAAAGAACACACAACACACACCCGGAGAAC
GAGGTAGGGCAGAAAGGTAGGACTCTCATCTAAGGTTTGCCTTAATGGCCCAAGAATTGCCCACCACTGCTAATGTGAGT
TGGAATTTGCTGGACCATCAATTGAGCCAGCCCAATTAGGTCTCCACATGCATGAGTGGGTGATCATGTGTCAAGTTTAT
GCAGGTTAGCATGCACTTTGTCCGTTGGAAACGATGTATCATTAGGC---------GAAGGAGGTTGTCTATAAATATGC
AGTGCGATGGATAGGGGTTGGTTTGTGCTGAAAGCAAGCTAGCTGGGAGCATAGTAGAAGAAGAGAGAGGCCACCTCGTG
ATGAAGAGGCTGGTGGTCCTGAGGAGGTGCGAGCCGATCGTGCGGTTCAGCTGCTGCGGCGTGCGGTACGGCGAGTGCCG
CCGCAACCACGCCGCCAGCACGGGGGGCTATGCCGTGGACGGCTGCAGGGAGTTCATCGCCGAGGGCGAGGAGGGCACCT
TCGGCGCACTCAAGTGCTCGGCCTGCGGCTGCCACCGCAGCTTCCACCACAGGGTGCAGGTCTATGAGGTTGCATGGGAC
TGCGAGTCCGACACGTCGTCGTCGTCTTCAAGCAGCAGCTAGGCTGCTGCCGCTGCCATTCCCCTCCATCGTCAAGCTGC
TGCTGC---------TGCATCATGTCTACTCTAGGACCCCTATGATTGTTAGCTGATCCTGTATTGAAATACTTATAATA
ACTCAAAGTGAGCATCTCTAGTCTACTCTCCGGTGTCTTGTTTGTTCCCTCCTCCTGATTGTAATCCCATGCAAGCTCAT
GTTATCTATCTATCTACATATTGCTTCTCTGAATCTGTCAATTGCCACTGATCATGTCAACTGCTTTGGCTCCAAACCTT
TTCCTATCTGGCTATAAACTGTTTCCATGGGATCTGTGTTTTTAACCCACACTGGTATTTTGGTCGGCCACCACTGGGTG
CAAATAAATCTGTTTTCCTTTTTGTCAGTTCATTGCCCAGGTTTGTGTCATCTGAACTTCGAGAGACATTCCTATATTCA
CCAAATCCAAGAACTTG-CACCTATCCAGGCAAACTCTAGTTCA------------------------------------
ACCTTAGTTCAAAACGACGACACTTATTTTGGATCGGAGGGAT--GCTAACTCCATTTCACATGCTTCCTCTT---AAGT
GTTTCCTCGGTGGCTGAGATGTTCTAGATC---------------GTGTACTAGTC---TGCATGCCTCTGTCCTGAAAG
GGTTGCTGTGCTAT--TTTCACGATACATCCTGATTTTGGAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGA
ATGCTTATTTTGGACATTTATGTGGAACGAAAAGTTAGATGCGTGGGCTGCTTGGACCTGCCTGCCCTGCCTCGACAGCG
GCATAAAAAGGGGCAGCACGACAGCAATTATAGCAGTAATTCGCTGAGGTACACACTATGAATAGCTCTA----GCCAGC
CAGCCTTTTTCTTTTCATCTTCCTCTCCTTTTCCCTGGAACCGCTTTCATGTCCCGTTCTATCCGGCCTTTTGGTCATTC
GTGCAACAACTGTTTGCAAGAGCCGATGACC----------------------CCATTGTCGTCGTGTTCCTCAGATCCA
G
>chr5A_1
AGATGTTTTAAATCCTTGCTTTTGAAGTAGATGCAGCACGTAAGAAAGGTGAAGGCGTGATGACCTTGGACCCCACTCAA
ATAGGGACCATCCATAGCCTACATGTAATAGCATGTTTGGGCTGCCCTGCAATGTCTGAATGCTTCTGGTACGTTTGGTA
TTCAACCAAGAAGACTGTGTCATCACT-GTTTAAGCCATCTTTGTTTTCAGGACATCCTATACCGTTAT--------TCT
TCCATTCTGAGTCGCTAATCCGTAGGGGTAAGTACATTG------TTGCATGCTTGATTAAAAGATATTTTTTTCACCTT
TGCGACGATTGCATGATTGTGATCCCTTCATTTGCTGTACATGA---TTGCACTTTAGCTTTTCCCCTATCACACTCGGT
CAATTGTTGTTTAGGAGTCTAAATCAATATAGAAATTCATGTCCACACACTATGCCACATGCTGAAACAGTAAAGGAAAT
CTATTGCGCAGGGATGGGGTAGAGCAACAGGTGCCTGGTGGCCAGAGAATGAGCAAATGAAACCAACACCCTGCCTTCTT
AGATATCTAGGCTGGCATGCAAATGCTGATGATATCCTTTCGACCGAAGGGGCCTACTCCTTTGGGATCCTTAAGATTCA
AGTATCCTTAACTGGTCACCCCAATTATATGAAACGAAGAAAAGGAGAGGGAAAGAACACACAACACACACCCGGAGAAC
GAGGTAGGGCAGAATGGTAGGACTCTCATCTAAGGTTTGCCTTAATGGCCCAAGAATTGCCCACCACTGCTAATGTGAGG
TGGAGTTTGCTGGACCATCAATTGAGCCAGCCCAATTAGGTCTCCACATGCATGAGTGGGTGATCATGTGTCAAGTTTAT
GCAGGTTAGCATGCACTTTGTCCGTCGGAAACGATGTATCATTAGGCGAAGGAGGGGAAGGAGGTTGTCTATAAATATGC
AGTGCGATGGATAGGGGTTGGTTTGTGCTGAAAACAAGCTAGCTGGGAGCATAGTGGAAGAAGAGAGAGGCCACCTCGTG
ATGAAGAGGCTGGTGGTCCTGAGGAGGTGCGAGCCGATCGTGCGGTTCAGCTGCTGCGGTGTGCGGTATGGCGAGTGCCG
CCGCAACCACGCCGCCAGCACGGGGGGCTATGCCGTGGACGGTTGCCGGGAGTTCATCGCCGAGGGCGAGGAGGGCACCT
TCGGCGCGCTCAAGTGCTCGGCCTGCGGCTGCCACCGCAGCTTCCACCACAGGGTGCAGGTCTACGAGGTTGCATGGGAC
TGCGAGTCCGATACGTCGTCGTCGTCTTCAAGCAGCAGCTAGGCTGCTGCCGCTGCCATTCCTCTCCATCGTCAAGCTGC
TGCTTCTGCTGCTGTTGCATCATGTCTACTCTAGGACCCCTATGATTGTTAGCTAATCCTGTATTGAAATACTTATAATA
ACTCGAAGTGAGCATCTCTAGTCTACTCTCCGGTGTCTTGTTTGTTCCCTCCT---GATTGTAATCCCATGCAAGCTCAT
GTTATGTATCTATCTACCTATTGCTTCTCTGGATCTGTCAATTGCCACTGACCATGTCAACTGCTCTGGCTCCAAACTTT
TTCCTATCTGGCTATAAACTGTTTCCATGGGATCTGTGTTCTTAACCCACGCTGGCATTTGGC-CGGCCACCACCGGGTG
CAAGTAAATCTGTTTTCCTTTTTGTCAGCTCATTGCCCAGGTTTGTGTCATCTGAACTTCGAGAGACATTCCTAT--TCT
CCAAATCCAAGAACTTGCCACCTATCCAGGCAAACTCAAGTTCA------------------------------------
ACCTTAGTTCAAAACGACGGCACTTATTTTGGATCGGAGGGAGTAGCTAGCTCCATTCCACATGCTTCTTCTTCTCAAGT
GCTTCCTCAGTGGCTGAGATGTTCTAGATCATGCTGTTCTAGATCGTGTACTAGTC---TACATGCCTCTGTCCTGAAAG
GGTTGCTGC---GCTATTGCACAGTACATCCTGATTTTGAAGCCAATTGAATGGAGATCATCAAATCACGGGGGAGGAAA
GCTAGCCTGGTCG-------------------------------------------------------------------
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--------------------------------------------------------------------------ACACGA
ATGCTTATTTTGGACATTTATGTGGAAGGAAAAGTTAGATGCGTGGGCTGCTTGGACCTGCCTGCC-----TCGACAGCG
GCATAAAAAGGGGCAGCACGACAGCAATTATAGCAGTAATTCGCTGAGATACACACTATGAATATCGCCAGC--------
---CCTTTTTCTTTTCATCTTCCTCTCCCTTTCCCTGGAACCGCTTTCATGTCGCGTTCCATCCGGCCTTTTGGTCATTC
GTGTTCCT--------------------------------------CAGATCGCCATTGTCGTCGTGTTCCTCAGATCCA
G
>SNPs
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-----S---------------S---------------S------------------------------------------
------S-------------------------------------------------------------------S-----
--S-----------------------------------------------------------------------------
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----------------------------------------S---------------------------------------
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--S------------------S-----------S-----S----------------------------------------
-S------------------------------------------------------------------------------
------------------------------------S--------------------S---S----SS------------
------S--------------------S----------------------SS----------------------------
---------------------------------------------------S------------S------------S--
-------------------------------S----------S----SS-S-----SS----------------------
-------SSSSSSSSS-S---SS---------------------------------------------------------
------S--S---------------------------S------------------------------------------
--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--------S------S--S-----------------S---S---------------------------------------
-------------S---S------------------------------SSS-SS-SSSS---------------------
---------SS------------------------------S---------------------------S----------
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------------------------------------------------------------------------SS------
----------------------------------S------S------S-------------------------S--S--
----------------SS-----------S-SSSSSSSSSSSSSSS----------------------------------
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>forward_403
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--------------------------------------------------------------TCCCCTATCACATTCGGT
CAT-----------------------------------------------------------------------------
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>reverse_2764
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-------------------------------------------ACACAGATCGCCATTGTCGT-----------------
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