>input_sequence_85101
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ATGAAGAGGCTGGTGGTCCTGA
GGAGGTGCGAGCCGATCGTGCGGTTCAGCTGCTGCGGTGTGCGGTATGGCGAGTGCCGCCGCAACCACGCCGCCAGCACG
GGGGGCTATGCCGTGGACGGTTGCCGGGAGTTCATCGCCGAGGGCGAGGAGGGCACCTTCGGCGCGCTCAAGTGCTCGGC
CTGCGGCTGCCACCGCAGCTTCCACCACAGGGTGCAGGTCTACGAGGTTGCATGGGACTGCGAGTCCGATACGTCGTCGT
CGTCTTCAAGCAGCAGCTAG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr5A_1_TraesCS5A01G227200
TGAAGTAGATGCAGCACGTAAGAAAGGTGAAGGCGTGATGACCTTGGACCCCACTCAAATAGGGACCATCCATAGCCTAC
ATGTAATAGCATGTTTGGGCTGCCCTGCAATGTCTGAATGCTTCTGGTACGTTTGGTATTCAACCAAGAAGACTGTGTCA
TCACT-GTTTAAGCCATCTTTGTTTTCAGGACATCCTATACCGTTAT--------TCTTCCATTCTGAGTCGCTAATCCG
TAGGGGTAAGTACATTG------TTGCATGCTTGATTAAAAGATATTTTTTTCACCTTTGCGACGATTGCATGATTGTGA
TCCCTTCATTTGCTGTACATGA---TTGCACTTTAGCTTTTCCCCTATCACACTCGGTCAATTGTTGTTTAGGAGTCTAA
ATCAATATAGAAATTCATGTCCACACACTATGCCACATGCTGAAACAGTAAAGGAAATCTATTGCGCAGGGATGGGGTAG
AGCAACAGGTGCCTGGTGGCCAGAGAATGAGCAAATGAAACCAACACCCTGCCTTCTTAGATATCTAGGCTGGCATGCAA
ATGCTGATGATATCCTTTCGACCGAAGGGGCCTACTCCTTTGGGATCCTTAAGATTCAAGTATCCTTAACTGGTCACCCC
AATTATATGAAACGAAGAAAAGGAGAGGGAAAGAACACACAACACACACCCGGAGAACGAGGTAGGGCAGAATGGTAGGA
CTCTCATCTAAGGTTTGCCTTAATGGCCCAAGAATTGCCCACCACTGCTAATGTGAGGTGGAGTTTGCTGGACCATCAAT
TGAGCCAGCCCAATTAGGTCTCCACATGCATGAGTGGGTGATCATGTGTCAAGTTTATGCAGGTTAGCATGCACTTTGTC
CGTCGGAAACGATGTATCATTAGGCGAAGGAGGGGAAGGAGGTTGTCTATAAATATGCAGTGCGATGGATAGGGGTTGGT
TTGTGCTGAAAACAAGCTAGCTGGGAGCATAGTGGAAGAAGAGAGAGGCCACCTCGTGATGAAGAGGCTGGTGGTCCTGA
GGAGGTGCGAGCCGATCGTGCGGTTCAGCTGCTGCGGTGTGCGGTATGGCGAGTGCCGCCGCAACCACGCCGCCAGCACG
GGGGGCTATGCCGTGGACGGTTGCCGGGAGTTCATCGCCGAGGGCGAGGAGGGCACCTTCGGCGCGCTCAAGTGCTCGGC
CTGCGGCTGCCACCGCAGCTTCCACCACAGGGTGCAGGTCTACGAGGTTGCATGGGACTGCGAGTCCGATACGTCGTCGT
CGTCTTCAAGCAGCAGCTAGGCTGCTGCCGCTGCCATTCCTCTCCATCGTCAAGCTGCTGCTTCTGCTGCTGTTGCATCA
TGTCTACTCTAGGACCCCTATGATTGTTAGCTAATCCTGTATTGAAATACTTATAATAACTCGAAGTGAGCATCTCTAGT
CTACTCTCCGGTGTCTTGTTTGTTCCCTCCT---GATTGTAATCCCATGCAAGCTCATGTTATGTATCTATCTACCTATT
GCTTCTCTGGATCTGTCAATTGCCACTGACCATGTCAACTGCTCTGGCTCCAAACTTTTTCCTATCTGGCTATAAACTGT
TTCCATGGGATCTGTGTTCTTAACCCACGCTGGCATTTGGC-CGGCCACCACCGGGTGCAAGTAAATCTGTTTTCCTTTT
TGTCAGCTCATTGCCCAGGTTTGTGTCATCTGAACTTCGAGAGACATTCCTAT--TCTCCAAATCCAAGAACTTGCCACC
TATCCAGGCAAACTCAAGTTCA------------------------------------ACCTTAGTTCAAAACGACGGCA
CTTATTTTGGATCGGAGGGAGTAGCTAGCTCCATTCCACATGCTTCTTCTTCTCAAGTGCTTCCTCAGTGGCTGAGATGT
TCTAGATCATGCTGTTCTAGATCGTGTACTAGTC---TACATGCCTCTGTCCTGAAAGGGTTGCTGC---GCTATTGCAC
AGTACATCCTGATTTTGAAGCCAATTGAATGGAGATCATCAAATCACGGGGGAGGAAAGCTAGCCTGGTCG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ACACGAATGCTTATTTTGGACATTTATG
TGGAAGGAAAAGTTAGATGCGTGGGCTGCTTGGACCTGCCTGCC-----TCGACAGCGGCATAAAAAGGGGCAGCACGAC
AGCAATTATAGCAGTAATTCGCTGAGATACACACTATGAATATCGCCAGC-----------CCTTTTTCTTTTCATCTTC
CTCTCCCTTTCCCTGGAACCGCTTTCATGTCGCGTTCCATCCGGCCTTTTGGTCATTCGTGTTCCT--------------
------------------------CAGATCGCCATTGTCGTCGTGTTCCTCAGATCCAGCCTC
>chr5D_1
TGAAGTAGATGCAGCACCTAAGAAAGGTGAAGGCGTGATGACCTTGGACCCCACTCAAACAGGGACCATCCATAGTCTAC
ATGTAATAGCATGTTTGGGCTGCCCTGCAATATCTGAATGCTTCTGGTACGTTTGGTATTCAATCAAGTAGACTGTGTCA
TCACAAGTTTAAGC------------CAGGACATCCTATACCGTTATGGATTTATTTTTCCATAACGAGTCACTAATCCG
TAGTGGTAAGTACAAGTACATATTTGCGTGCTTGATTAAAAGATATTTTTTTCACCTTTGCGATAATTGCATGATTGTGA
TCCCTTCTTTTTCTGTATATGATTGTTGCACTTTAGCTTTTCCCCTATCACACTCGGTCAATTGTTGTTTAGGAGTCTAA
ATCGATAT--AAATCCATGTCCACACATTATGCCACATGCTGAAACAGTAAAGGAAATCTATTGCACAGGGATGGGGTAG
AGCAACAGGTGCCTGGTGGCCAGAGAATGAGCAAAGGAAAACAACACCCTGCCTTCTTAGATATCTAGGCTGGCATGCAA
ATGCTGATGATATCCTTTCGACCGAAGGGGCCTACTCCTTTGGGATTCTTAAGATTCAAGTATCCTTAACTGGTCACCCC
AATTATATGAAACGAAGAAAAGGAGTAGGAAAGAACACACAACACACACCCGGAGAACGAGGTAGGGCAGAAAGGTAGGA
CTCTCATCTAAGGTTTGCCTTAATGGCCCAAGAATTGCCCACCACTGCTAATGTGAGTTGGAATTTGCTGGACCATCAAT
TGAGCCAGCCCAATTAGGTCTCCACATGCATGAGTGGGTGATCATGTGTCAAGTTTATGCAGGTTAGCATGCACTTTGTC
CGTTGGAAACGATGTATCATTAGGC---------GAAGGAGGTTGTCTATAAATATGCAGTGCGATGGATAGGGGTTGGT
TTGTGCTGAAAGCAAGCTAGCTGGGAGCATAGTAGAAGAAGAGAGAGGCCACCTCGTGATGAAGAGGCTGGTGGTCCTGA
GGAGGTGCGAGCCGATCGTGCGGTTCAGCTGCTGCGGCGTGCGGTACGGCGAGTGCCGCCGCAACCACGCCGCCAGCACG
GGGGGCTATGCCGTGGACGGCTGCAGGGAGTTCATCGCCGAGGGCGAGGAGGGCACCTTCGGCGCACTCAAGTGCTCGGC
CTGCGGCTGCCACCGCAGCTTCCACCACAGGGTGCAGGTCTATGAGGTTGCATGGGACTGCGAGTCCGACACGTCGTCGT
CGTCTTCAAGCAGCAGCTAGGCTGCTGCCGCTGCCATTCCCCTCCATCGTCAAGCTGCTGCTGC---------TGCATCA
TGTCTACTCTAGGACCCCTATGATTGTTAGCTGATCCTGTATTGAAATACTTATAATAACTCAAAGTGAGCATCTCTAGT
CTACTCTCCGGTGTCTTGTTTGTTCCCTCCTCCTGATTGTAATCCCATGCAAGCTCATGTTATCTATCTATCTACATATT
GCTTCTCTGAATCTGTCAATTGCCACTGATCATGTCAACTGCTTTGGCTCCAAACCTTTTCCTATCTGGCTATAAACTGT
TTCCATGGGATCTGTGTTTTTAACCCACACTGGTATTTTGGTCGGCCACCACTGGGTGCAAATAAATCTGTTTTCCTTTT
TGTCAGTTCATTGCCCAGGTTTGTGTCATCTGAACTTCGAGAGACATTCCTATATTCACCAAATCCAAGAACTTG-CACC
TATCCAGGCAAACTCTAGTTCA------------------------------------ACCTTAGTTCAAAACGACGACA
CTTATTTTGGATCGGAGGGAT--GCTAACTCCATTTCACATGCTTCCTCTT---AAGTGTTTCCTCGGTGGCTGAGATGT
TCTAGATC---------------GTGTACTAGTC---TGCATGCCTCTGTCCTGAAAGGGTTGCTGTGCTAT--TTTCAC
GATACATCCTGATTTTGGAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGAATGCTTATTTTGGACATTTATG
TGGAACGAAAAGTTAGATGCGTGGGCTGCTTGGACCTGCCTGCCCTGCCTCGACAGCGGCATAAAAAGGGGCAGCACGAC
AGCAATTATAGCAGTAATTCGCTGAGGTACACACTATGAATAGCTCTA----GCCAGCCAGCCTTTTTCTTTTCATCTTC
CTCTCCTTTTCCCTGGAACCGCTTTCATGTCCCGTTCTATCCGGCCTTTTGGTCATTCGTGCAACAACTGTTTGCAAGAG
CCGATGACC----------------------CCATTGTCGTCGTGTTCCTCAGATCCAGCCTC
>chr5B_1
TGAAGTAGATGCAGCACCTAAGAAAGGTGAAGG-------ACCTTGGACCCCACTCAAACAGGGACCATCCATAGTCTAC
ATGTAATAGCATGTTTGGGCTGCCCTGCAATATCTGAATGCTTCTGGTACGTTTGGTATTCAATCAAGTAGACTGTGTCA
TCACT-GTTTAAGC------------CAGGACATCCTATACCGTTAT--------TTTTCCATGACGAGTCACTAATCCT
TAGTGGTAAGTACATAG------TTGCGTGCTTGATTAAAAGATATTTTTT-CACCTTTGCGACTATTGCATGATTGTGA
TCCCTTCTTTTGCTGTATATGATTG---CACTTTAGCTTTTCCCCTATCACATTCGGTCATTTGTTGTTTAGGAGTCTAA
ATCAATAT--AAATCCATGTCCACACATTATGCCACATGCTGAAACAGTAAAGGAAATCTATTGCACAGGGATGGGGTAG
AGCAACAGGTGCCTGGTGGCCAGAGAATGAGCAAAGGAAAACAACACCCTGCCTTCTTAGATATCTAGGCTGGCATGCAA
ATGCTGATGATATCCTTTCGACCGAAGGGGCCTACTCCTTTGGGATTCTTAAGATTCAAGTATCCTTAACTGGTCACCCC
AATTATATGAAACGAAGAAAAGGAGTAGGAAAGAACACACAACACACACCCGGAGAACGAGGTAGGGCAGAAAGGTAGGA
CTCTCATCTAAGGTTTGCCTTAATGGCCCAAGAATTGCCCACCACTGCTAATGTGAGGTGGAATTTGCTGGACCATCAAT
TGAGCCAGCCCAATTAGGTCTCCACATGCATGAGTGGGTGATCATGTGTCAAGTTTATGCAGGTTAGCATGCACTTTGTC
CGTTGGAAACGATGTATCGTTAGGCGAAGGAGGGGAAGGAGGTTGTCTATAAATATGCAGTGCGATGGATAGGGGTTGGT
TTGTGCTGAAAGCAAGCTAGCTGGGAGCATAGTGGAAGAAGAGAGAGGCCACCTCGTGATGAAGAGGCTGGTGGTCCTGA
GGAGGTGCGAGCCGATCGTGCGGTTCAGCTGCTGCGGCGTGCGGTACGGCGAGTGCCGCCACAACCACGCCGCCAGCACC
GGGGGCTATGCTGTGGATGGCTGCAGGGAGTTCATCGCCGAGGGCGAGGAGGGCACCTTGGGCGCGCTCAAGTGCTCGGC
CTGCGGCTGCCACCGCAGCTTCCACCACAGGGTGCAGGTCTACGAGGTTGCATGGGACTGCGAGTCCGACACGTCGTCGT
CGTCTTCAAGCAGCGGCTAGGCTGCTGCCGCTGCCGTTCTCCTCTGTCGTCAAGCTGCTGCTGCC---GCTGTTGCATCA
TGTCTGCTCTAGGACCCCTATGATTGTTCACTAATCCTGTATTGAAATACTTATAATAACTCAAAGTGAGCATCTCTAGT
CTACTCTCCGGTGTCTTGTTTGTTCCCTCATCCTGATTGTAACCCCATGCAAGCTTATGTTATCTATCTATCTACCTATT
GCTTCTCTGTATCTGTCAATGGCCATGGTTCATGGTAACTGCTCTGGCTCCAAACTTTTTCCTATGGATACTGCACCTGG
CT-----------------------------------------------------------ATATATGTGTTTTCCTTTT
TGTCAGCTCATTGCCGAGGTTTGTGTCATCTGAACTTCGAGAGACATTCCTAT--TCTCCAAATCCAAGA----------
-ATCCAGGCAAACTCAAGTTCAGGCGCACAGCATACGTAAAATGCTACTCTGAGTTCAACCTTAGTCCAAAACTACAACA
CTTATTTTGGATCGAAGGCAGTAGCTAACTCCATTTCACATGCTTCTTCT---CAAGTGTTTCCTCAGTGGATGAAATGT
TCTAGATC---------------GTGCTGTTCTAGATTGCATGCCTCTGTCCTGAAAGGGTTGCTGCTGTGCTATTGCAC
AATACATCCTGATTTTGAAACCAATTGAATGGAGATCATCAAATCACTGGGGAGGAAAGCTAGCCTGGTCG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ACACGAATGCTTATTTTGGACATTTATG
TGGAAGGAAAAGTTAGATGCGTGGGCTGCTTGGACCTGCCTGCC-----TCGACAGCGGCATAAAAAGGGGCAGCACGAC
AGCAATTATAGCAGTAATTCGCTGAGATACACACTATGAATAGCTCTAGCCAGCCAGCCAGCCTTTTTCTTTTCATCTTC
CTCTCCTTTTCCATGGAACTGCTTTCGTGTCCCGTTCCATCCGGCCTTTTGGCCACTCGTGCAACAACTGTTTGGGAGAG
CCGATGAACCCCCCGGCCTTGACACAGATCGCCATTGTCGTCGTGTTCCTCAGATCCAGCCTC
>SNPs
-----------------S-----------------------------------------S---------------S----
-------------------------------S-------------------------------S----S-----------
--------------SSSSSSSSSSSS------------------------------S------SSS-----S--------
---S-----------S-----------S------------------------------------S---------------
-------S---------S--------------------------------------------------------------
--------SS----S------------S-------------------------------------S--------------
-----------------------------------S----S---------------------------------------
----------------------------------------------S---------------------------------
-------------------------SS---------------------------------------------S-------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
-------------------------------------S--------S---------------------------------
--------------------S---S-------------------------------------------------------
---------------------------------------------------------------------S----------
----------------------------------------S---------------------S-SSSS------------
--------------------------------------------------------------S-----------------
---------------------------------------------------------------S----------------
---------S-------------------S--------------------------------------------------
------------------S---------S----S----S-S-----------S--------S------------------
---------------------------------------------------------------------------S----
-----------------------------------------------------------------------------S--
---------------------------S-------S---------------SS------S--------------------
--------SSSSSSSSSSSSSSS---------------S-----------------------------------------
-S---------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-S-S---------------------------------
------S------------------------S-----------------------------SSS-S--------------
---------------------------------------------------------------
>forward_607
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GGGCCTACTCCTTTGGGATC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2703
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TCCTCAGATCGCCATTGT
CG-------------------------------------------------------------
