>input_sequence_85055
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---------------------------------ATGGGCAGCAACAAGGCCGCGGTGTGCGTGCTGTCGCTCGTCCTGTG
CAGCCTACTCGCCGCGAACACGGCGGCGGCGGCGGGTTGCGACGCGAGCGCGCTGAGCCCGTGCGTGGGCGCCATCATGC
TGGGCGGGCCGGTGACGCCGGGGTGCTGCGCGCGGCTGCGCGCCCAGCGGGCGTGCCTGTGCCAGTACGCGCGCGACCCG
TCGTACCGCGGCTACGTCAACAGCCCCAGGGCGCAGAGCGTCGTCGCCGCCTGCGGCCTCCCCAGGCCCAAGTGCTGA--
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>chr7B_1_TraesCS7B01G313000
GGGCTGATGAGGTGGGAGGGGGGAGGAGAATGGAGGGGCTCGTGTTGGATAAGAGATTATAGTGGCCAGGGAGCTCGCCG
GAGAAGCAAGCCGGCGGATCCAGGAGAGGTGTGCCCATGGTCGCTTGAGAAGAGAGATGGAGGACGATGGGAGGGAGAAA
AGAGAAAAAACGATGAAAGGAAGAGATAAGAACGAACAAAGATAAGAATGGAAGCAGAGAGAAGATACGTGGCAAAATGG
ACGCGGGTCCACATGGACGCACGTCGTCAGCGAGCGACTGGCCCAAAACATAGCCGGTCCGTCCGGCTGTAACCATTTCC
CTTTATAATAGAGGGGTACGC-GTCCGCGCGGCCCCTGCCAAGTTTGAATTCAAAATTTGTGTTGATTTTTGTGTTACAT
TACTGTTTTGTACCCATAGCACAGG-------------------------------------------------------
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--------CATTATTTCGTTTTTGAGTTCACTTATTTCTTTTCCTATTGCTGACTTTCATGCTTTGAGTTTAAAAATCAC
ACCGTCATGCATATAGCCAAAGATCCCAGCATAAGTAATATT----TTTGCACCGTGTCCCGGTGCACATGCATGGCCAT
TCGCGGCTAGTCGCAATACCATGAACCGAACATCGCAACATCGATGCCCATGCTTCGCCCATATCCACGTCCATCCAGAT
CGTCCTTCTTCCCATGCATTCCCTAGATGAGATGCATGCATGGTACAGCCTATAAATCATAGGCGGCTCCAGGAATTTGC
AACCGGGTATTCATATGTATTCATTTTGCCAAAATCATTGTGGTTTTCTGAAAATTGTCACTTTTTTGCCAAAATCAATA
TTGTTTTGTAAAAATCATGGGTATTCATATGAAGATCCAAGAATACTCCTAGTGCCGCCCCTGCTATAAATGAGGATCAA
ACCCGCACACAAACGTACCAGCCAGCCACCAGCCATCTCACCATCTCGCTCTCCAATCTCTGCTCCAAACACTTCGATCA
----CCAACACCGGCCAAGC-AAGCAAGTCAGCATGGGCAGCAACAAGGCCGCGGTGTGCGTGCTGTCGCTCGTCCTGTG
CAGCCTACTCGCCGCGAACACGGCGGCGGCGGCGGGTTGCGACGCGAGCGCGCTGAGCCCGTGCGTGGGCGCCATCATGC
TGGGCGGGCCGGTGACGCCGGGGTGCTGCGCGCGGCTGCGCGCCCAGCGGGCGTGCCTGTGCCAGTACGCGCGCGACCCG
TCGTACCGCGGCTACGTCAACAGCCCCAGGGCGCAGAGCGTCGTCGCCGCCTGCGGCCTCCCCAGGCCCAAGTGCTGATC
GCCGCTGTTGCCGCGCGCGCCATATACATCGACTCCGCCCTATGTGGCCGGCATTGCGCACGATGCCGGGCACCGGTGGA
CGGCGGTCTACGTAATGTAACGTGTGGTTAATTATACGGTCGACGACATCATCGAGCTGGCACGTACGTGCCCGTGTGTG
CGTGCGTGTACGGTTGAGTCGTGGACGCCTAAATGAGTGAAGTCTGTTTTGAACCTTGAGGTTGTAGAGTGTGATGCAAA
TAAACCCTCAAGTCTAAATCCTTGAAGTTGGTATCCTGTACTCCTCGATCCCGGTCAATTTAAACCTTAAATCCGTTTGG
CACATCTGGAAAATAACAAACCTGGCCGAGATCACTGTCCACAGTGACTGACCACCCGGGTCTACATGTCATATTCATCA
--------------------TCTCTCTC--------TCAGCGACCAACGCTAGCCATCAACTCGTGCCCGTCTGTTCCAG
GAGAAGCGATTTGTATACGCGCGTTAGTGAGAATCGAT-AAGGCTGTGTACAGGTTGCGGG-TAGCTAGGCATATGCAGA
CGAGTTCTTCGACTCGACGGAGGTCCTTGGAGGTCATGTCGCCGGCGTCCGTGGCCTCGCCGGCAAGCTCCGGCAGCCGC
GGCGACCACAGTTGCTGACTCTGTTGTGGGCCCCTACTCGATGTGTGGGCCACGGACACCTGCAGCGTCGAGGATCGTCG
CCGGAGGTTCATGCGGTCCCTAGGCCTCCTGGATCCGGCCGTCCTGCTTTACCAGGAGCCGCGTGCGAGGCCCGTGCCAG
CGAGGAGATCAATAGTGAGCTCGGGAGGCAGGAGGAGCACTAGGGATGAGCTTGTAGAGGAGGAATACGAGCTGGTGAAG
AATGGGACATCTAC------------------------------------------------------------------
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-GGCATCTGGAGCTCGTACACAACATGCACAGCTAGCTCGATTATGTATGTCCAAGCAAGATGTGCACGTACACAACGTA
AACCGCCCGTGTCTTGATCGATTCCTTGCTGGAAACAAACAAGTAACGCATGCAC
>chr7B_328
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-------ATAGAGGGGGCACGTGTCCGCGCGGCCCATGCCAAGTTTGAATTCAAAATTTGTGTTGATTTCTGTGTTACAT
TACTGTTTTGTACCCATAGCACAAGCATTATTTCTTCTTTGAATTCACTTATTTCTTAGTTTGCTATTGCTAACTTTCAT
GCTTTGATAACTTTGTTTTGAGTTTAAAACTCACACTGTCGTGCATAGATTTTTGTGTTACACGACTGTTGCGAACCCAT
AGCACAAACATTATTTCGTTTTTCAGTTCACTTTTTTCATTTCCCATTGCTGACTTTCATGCTTTGAGTTTAAAAAGCAT
ACCGTCATGC--ATAGCCAAAGATCCCAACACGAGTAGTATAATAGTTTGCACCTTGTCCCGGTGCACATGCATGGCCAT
GCGCGGCTAGTCGCAATACCATGAACCGAACATGGCAGCATCGTTGCCCATGCTTCGCCCATATCCGCGTCCACCCCGAT
CGATCTTCTTCCCATGCATTCTCGAGATAAGATGCATGCACGACACAGC-------------------------------
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---------------------------------------------------------------CTATAAATGAGGATCAA
ACCCGCACACAAACGTACCAGCC-----------AACTCACCAT---------CGATCTCTGCTCC-AACACTTCGATCG
ATCGCCAACACCGGCCAAGCAAAGCAAGCTACCATGGGCAACAGCAAGGCCGCGGTGTGCGTGCTGGCGCTCGTCCTGTG
CGGCCTGCTCGCCGCAGACACGGCGGCGGCGGCGGGGTGCGACGCGAGCGCGCTGAGGCCGTGCGTGGGCGCTATCATGC
TGGGCGGGGCGGTGACGCCGGGGTGCTGCGCGCGGCTGCGCGCCCAGCGGGCGTGCCTGTGCCAGTACGCACGCGACCCG
TCCTACCGCGGCTACGTCAACAGCCCAAGGGCGCAGAGCGTCGTCGCCGCCTGCGGCCTCCCCGGGCCCAAGTGCTGATC
GCC-----CGCCCGGCGCGCTATACATATCGACTCCGCCCCGTGTGGCCGGCGTCGTGCACGATGCCGGGCACCGGTGGA
CGGCGGTCTACGTAATGTAATATGTGGTTAATTACACGGTCGACGACGCCATCGAGCTGGCACGTACGTGC---------
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>chr7D_876
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---------------------------------------------------------------CTATAAATGCGAGTCGA
ACCCTCACACAAACGTACCAGCGAGCCACCAGCCAACTCACCATCTCGCTCGCCGATCTCTGCTCC-AACACTTCGATCG
----CCAACACCG----AGCAAAGCAAGTCACCATGGGCAACAACAAGGCCGCGGTCTGCGTGCTGGCGCTCGTCCTGTG
CGGCCTGCTCGCCACGGACA---CGGCGGCGGCGGGGTGCGACGCGAGCGCGCTGAGCCCGTGCATGGGCGCCATCATGC
TGGGCGGGGCGGTGACGCCGGGGTGCTGCGCGCGGCTGCGCGCCCAGCGGGCGTGCCTGTGCCAGTACGCGCGCGACCCA
TCGTACCGCGGCTACGTCAACAGCCCGAGGGCGCAGAGCGTCGTCGCCGCGTGCGGCCTCCCCAGGCCCAAGTGCTGATC
GCTGTCGTCGCCGCACGCGCTATATATATCGACTCCGCACTGTGC------CATCGTGCATGATGCCGGGCACCGGTGAA
CGGCGGTCTACGTAATGTAATGTGTGCTTAATTATACGGTCGACGACGCCATCGAGCTGGCACGTACGTGC---------
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>chr2D_1479
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-------------------------------AATGAGTAAAGTATGTTTTAAACCCTGAGGTTGTAGACTGTGACGTAAA
TAAACCCTCAAGTCTAAATCCCTGAAGTTGGTACCCTATACTCTTCGATCCCGGTCAATTTAAACCTTGAATGCGTTTGG
CGCACCTGGAAAATAACGATCCTGGCCGAGATCACGGTCTACAGTCACTGACCAGCCGGGTCTACATGTCATATTCATCT
CCCATCTCCCAATCTCTGACTCTCTCTC--------TGAGCGACCAACGCTAGCCATCAACTCGTGCCCGTTTGTTCCAG
GAGAAGGGATTTGTATACATGCGTGAGTGAGAATCGATCAAGGCTGTGTATGGGTTGCGGG-TAG----ACGTAGCTGGA
CAAGTTCTTCGACTCGACGGAGGTCCTTGGAGGTCATGTCGCTGGCGTCCGTGGCCTCGCCGGCAAGCTCCGTCCACCAC
AGCGACGACAGTGGCTGACTT------------------------TGGGCCACGGACCCCTGCAGCGTCGTGGATCGTCG
CCGGAGGTTCATCCGGTCCCTAGGCCTCCTGGATCCGGCCGCCCTGCTTTACGAGGAGCCGTGCGCGAGGCCCGTGCCAG
CGAGGAGATCAATAGTGAGCTCGGGAGGCAGGAGGAGCAGTACGGATGAGCTTGGAGACGAGGAATACGAGCTGGCGAAG
AATGGGAC------------------------------------------------------------------------
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>chr7B_1481
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---------------------------------TGAGTGAAGTCTGTTTTGAACCTTGAGGTTGTAGAGTGTGATGCAAA
TAAACCCTCAAGTCTAAATCCTTGAAGTTGGTATCCTGTACTCCTCGATCCCGGTCAATTTAAACCTTAAATCCGTTTGG
CACATCTGGAAAATAACAAACCTGGCCGAGATCACTGTCCACAGTGACTGACCACCCGGGTCTACATGTCATATTCATCA
--------------------TCTCTCTC--------TCAGCGACCAACGCTAGCCATCAACTCGTGCCCGTCTGTTCCAG
GAGAAGCGATTTGTATACGCGCGTTAGTGAGAATCGAT-AAGGCTGTGTACAGGTTGCGGG-TAGCTAGGCATATGCAGA
CGAGTTCTTCGACTCGACGGAGGTCCTTGGAGGTCATGTCGCCGGCGTCCGTGGCCTCGCCGGCAAGCTCCGGCAGCCGC
GGCGACCACAGTTGCTGACTCTGTTGTGGGCCCCTACTCGATGTGTGGGCCACGGACACCTGCAGCGTCGAGGATCGTCG
CCGGAGGTTCATGCGGTCCCTAGGCCTCCTGGATCCGGCCGTCCTGCTTTACCAGGAGCCGCGTGCGAGGCCCGTGCCAG
CGAGGAGATCAATAGTGAGCTCGGGAGGCAGGAGGAGCACTAGGGATGAGCTTGTAGAGGAGGAATACGAGCTGGTGAAG
AATGGGACATCTAC------------------------------------------------------------------
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-GGCATCTGGAGCTCGTACACAACATGCACAGCTAGCTCGATTATGTATGTCCAAGCAAGATGTGCACGTACACAACGTA
AGCCGCCCGTGTCTTGATCGATTCCTTGCTGGAAACAAACAAGTAACGCATGCAC
>chr7B_1481
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---------------------------------TGAGTGAAGTCTGTTTTGAACCCTGGGGTTGTAGAGTGCGACGAGAA
TGAACCCTCAAGTCTAAATCCCTGAACTTAGTATCCTATACTCCTTGATTCCGATCAATTTAAACCTTGAATCCGTTGGG
CGCACCGGGAAAATAACTATCCTGGCCGAGATCACTATCTACCGTCACTGACCACCCAGGTCTACATGTCATATTAATCT
CCCATCTCCCAATCTCT--CTGTCTCTC--------TCATCGACCAACGCTAGCCATCAACTCATGCCCGTTTCTTCCTG
GAGAAGCGATTTGCACACGTGCGTGAGTGAGAATCGATCAAGGCTCTGTACGGGTTTACCCATAG----ACGTAGGCGGA
CGAGTTCTTCGACTCGACGGAGGTCCTTGGAGATCATGTCGCCGGCGTCCGTCA------CGGCGAGCTAT-TCCACCAC
AGCGACGAGAGTGGCTGACTCTGTTGTGGGCCCCTAGTCGATGTGGGGGCCACGGACACATGCAGCGTCGAGGATCGTCG
CCGGAGGTTCATCCAGTCCCTAGGCCTCCTGG-TCCGGCCGCTCTGCTTTACCAGGAGCCACGCGCGAGGCCCGTGC---
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>chr6B_1482
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----------------------------------GAGTGAAGTCTGTTTTGAACCTTGAGATTGTAGGGTGTGACGCAAA
TGAACCCTCAAGTCTAAATCCCTGAAGTTGGTACCCTGTACTCCTCGATCCCGGTCAATTTAGACCTTAAATCCGTTTGG
CACACCTGGAAAATAACAAACCTGGCCGAGATCACTGTCCACAGTCATTGACCACCCGGGTCTACATGTCATATTCATCA
--------------------TCTCTCTCTCTCAGCGTCAGCGACCAACGCTAGCCATCAACTCGTGCCCATCTGTTCCAG
GAGAAGCGATTTGTATACGCGCGTTAGTGAGAATCGATCAAGGCTGTGTACAGGTTGCGGG-TAG----GCATAGGCAGA
CGAGTTCTTCGACTCGACGGAGGTCCTTGTAGGTCATGTCGCCGGCGTCCGTGGCCTCGCCGGCAAGCTCCGGCAGCCGC
GGCGACCACAGTTGCTGACTCTGTTGTGGGCCCCTACTCGATGTGTGGGCCACGGACACCTGCAGCGTCGAGGATCGTCG
CCGGAGGTTCATGCGGTCCCTAGGCCTCCTGGATCCGGCCGTCCTGCTTTACCAGGAGCCGCGTGCGAGGCCCGTGCCAG
CGAGGAGATCAATAGTGAGCTCGGGAGGCAGGAGGAGCACTAGGGATGAGCTTGTAGAGGAGGAATACGAGCTGGTGAAG
AATGGGACGTCTAC------------------------------------------------------------------
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-GGCATCTGGAGCTCGTACACAACATGCACAGCTAGCTCGATTATGTATGTCCAAGCAAGATGTGCACGTACACAACGTA
AGCCGCCCGTGTCTTGATCGATTCCTTGC--------------------------
>chr1B_1711
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---------------------------------------------------AGCCATCAACTTGTGCCCGTCTGTTTCAG
GAGAAGCGATTTGTATACGCGCGTTAGTGAGAATCGATCAAGGCTGTGTACAAGTTGCGGG-TAG----GCATAGGCAGA
CGAGTTCTTCGACTCGACGGAGGTCCTTGGAGGTCATGTCGCCGGCGTCCGTGGCCTCGCCGGCAAGCTCTGGCAGCCGC
GGCGACCACAGTTGCTGACTCTGTTGTGGGCCCCTACTCGATGTGTGGGCCACGGACACCTGCAGCGTCGAGGATCGTCG
CCGGAGGTTCATGCGGTCCCTAGGCCTCCTGGATCTGGCCGTCCTGCTTTACCAGGAGCCGCGTGCGAGGCCCGTGCCAG
CGAGGAGATCAATAGTGAGCTCGGGAGGCAGGAGGAGCACTAGGGATGAGCTTGTAGAGGAGGAAGACGACCTGGTGAAG
AATGGGACGTCTACGGCATCTGCAAGGTTTTGGTTACCAGTCGAAATTTCAAGATTTCCCATGGTTACCACGTATTTCCG
TGCCCCTCGGTAAATCGTCATACCGAGCAAAAAATACCATTTTTTTGAAATTTTTGAATTTAAACACTCGATTTACAGTA
AGGTATGTAGGGTCTAATTAATGCAATGAAAGTTGGTTATGGCATGTTGGTAGCAACCTAGTTCCTGTTTTGAGAGGTCT
CTGGTTTGAATATTCGTTCATTTTCTTATTTGAATTCAAAATTCAACTACAAAATTCGCTCGAAATATTCTCGGTATTTG
TCGGTATTTCTCGGTAACCGTGGTAACCACATTTATCAGTCCCCCTCGGTAAAATTACCTCATTCGGTAACCAAAACCTT
GGGCATCTGGAGCTCGTACACAACATGCACAGCTAGCTCGATTATGTATGTCCAAGCAAGATGTGCACGTACACAACGTA
AGCCGCCCGTGTCTTGATCGATTCCTTGCTGGAAACAAACAACTAACGCATGCAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS---------SSSSS--------------S---------------------------------S----------
-----------------------S--------------------------------------------------------
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-----------------------S---------S----S-----S-------------------------------S--S
----------SS----------------S--SS----S---S------------S-------------------------
S--------------------------------S---S-----S----------------------S------S--S---
--SS-----------------S-S----S-----------S-SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
-----------------------------------S---------------S--S-----------S------------S
-------------------------------S--------S-------------------------S-------------
-S----S---------S-------------------S-------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------S-----------------------------------------------------
----SS--S-----------S-----S--------------S------------S-S-----------------------
--------------------S--------------------------SS----------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
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-S-----------------------------------------------------
>forward_1020
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----------------------------------------GAATACTCCTAGTGCCGCCC--------------------
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>reverse_2802
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-ACCGCCCGTGTCTTGATC------------------------------------
